CX296514

Overview
NameCX296514
Unique NameCX296514
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296514_ssr404 microsatellite CX296514_ssr404:404..424. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15080 contig Ccv1_Contig15080:21..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF97_ARATH (Ethylene-responsive transcription factor 14 OS=Arabidopsis thaliana GN=ERF14 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.984e-20
Identity = 44/64 (68.75%), Postives = 52/64 (81.25%), Query Frame = 1
Query:  433 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLE 624
            E+  YRGVRRRPWG+YAAEIRD  + G RVWLGTFDTA +AA+AYD +A+ +RG  AILNFP E
Sbjct:   16 EQGKYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAYDRAAYSMRGKAAILNFPHE 79          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF95_ARATH (Ethylene-responsive transcription factor ERF095 OS=Arabidopsis thaliana GN=ERF095 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.796e-20
Identity = 44/63 (69.84%), Postives = 53/63 (84.13%), Query Frame = 1
Query:  436 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLE 624
            E  YRGVR+RPWG+YAAEIRD  R G+RVWLGTF+TA +AA+AYD +AF +RG +AILNFP E
Sbjct:   11 EMKYRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRAILNFPHE 73          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF93_ARATH (Ethylene-responsive transcription factor 15 OS=Arabidopsis thaliana GN=ERF15 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.796e-20
Identity = 45/65 (69.23%), Postives = 52/65 (80.00%), Query Frame = 1
Query:  433 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLEV 627
            EE+ YRGVR+RPWG++AAEIRD  R G RVWLGTFD A EAA AYD +AF  +GS A LNFP+EV
Sbjct:   82 EERSYRGVRKRPWGKFAAEIRDSTRNGIRVWLGTFDKAEEAALAYDQAAFATKGSLATLNFPVEV 146          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 8.876e-20
Identity = 43/62 (69.35%), Postives = 53/62 (85.48%), Query Frame = 1
Query:  445 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLEVG 630
            YRGVRRRPWG++AAEIRDP + G+RVWLGT++T  +AA AYD +AF+LRGSKA LNFP  +G
Sbjct:   92 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPHLIG 153          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.876e-20
Identity = 46/63 (73.02%), Postives = 53/63 (84.13%), Query Frame = 1
Query:  433 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPL 621
            +E H+RGVR+RPWGRYAAEIRDP +K +RVWLGTFDTA EAA+AYD +A   RGSKA  NFPL
Sbjct:   29 KEVHFRGVRKRPWGRYAAEIRDPGKK-TRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFPL 90          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF92_ARATH (Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.159e-19
Identity = 45/63 (71.43%), Postives = 51/63 (80.95%), Query Frame = 1
Query:  436 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLE 624
            EK YRGVRRRPWG++AAEIRD  R G RVWLGTF++A EAA AYD +AF +RGS AILNF  E
Sbjct:   79 EKSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILNFSAE 141          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.405e-19
Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 1
Query:  430 IEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLE 624
            ++E  YRGVR+RPWGR+AAEIRDP +K SRVWLGTFD+AV+AA+AYD +A  LRG KA  NFP++
Sbjct:   22 VKEPRYRGVRKRPWGRFAAEIRDPLKK-SRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFPID 85          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF77_ARATH (Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.753e-19
Identity = 45/63 (71.43%), Postives = 52/63 (82.54%), Query Frame = 1
Query:  433 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPL 621
            +E  YRGVRRRPWGRYAAEIRDP +K  RVWLG+F+T  EAA+AYD++A R RGSKA  NFPL
Sbjct:   49 KEVRYRGVRRRPWGRYAAEIRDPVKK-KRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNFPL 110          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.753e-19
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 1
Query:  436 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            +++YRGVR+RPWG++AAEIRDPN K +RVWLGTFDTA EAA AYD +AF  RG KA LNFP
Sbjct:   67 QRNYRGVRQRPWGKWAAEIRDPN-KAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFP 126          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.514e-19
Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = 1
Query:  334 SNVNDDADNPVAVKNKDPXXXXXXXXXXXXXXIEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            S+ +++   PV    +DP              + ++HYRGVR+RPWG++AAEIRDP +K +RVWLGTF+TA  AA AYDN+A + +GSKA LNFP
Sbjct:   57 SSHDNNQHQPVVYNQQDPNPPAPPTQDQGL--LRKRHYRGVRQRPWGKWAAEIRDP-QKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFP 148          
The following BLAST results are available for this feature:
BLAST of CX296514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
ERF97_ARATH3.984e-2068.75Ethylene-responsive transcription factor 14 OS=Ara... [more]
ERF95_ARATH6.796e-2069.84Ethylene-responsive transcription factor ERF095 OS... [more]
ERF93_ARATH6.796e-2069.23Ethylene-responsive transcription factor 15 OS=Ara... [more]
ERF99_ARATH8.876e-2069.35Ethylene-responsive transcription factor 13 OS=Ara... [more]
ERF80_ARATH8.876e-2073.02Ethylene-responsive transcription factor 9 OS=Arab... [more]
ERF92_ARATH1.159e-1971.43Ethylene-responsive transcription factor 1B OS=Ara... [more]
ERF83_ARATH4.405e-1967.69Ethylene-responsive transcription factor 7 OS=Arab... [more]
ERF77_ARATH5.753e-1971.43Ethylene-responsive transcription factor 10 OS=Ara... [more]
EF112_ARATH5.753e-1972.13Ethylene-responsive transcription factor ERF112 OS... [more]
EF115_ARATH7.514e-1949.47Ethylene-responsive transcription factor ERF115 OS... [more]

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Properties
Property NameValue
Genbank descriptionC05142C04SK FerrChloL1 Citrus clementina cDNA clone C05142C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296514 ID=CX296514; Name=CX296514; organism=Citrus clementina; type=EST; length=661bp
GAGGCATTTACCTTTCATCTTACCTTCAATATGGCATCTCTGAATGAAGC
ATCAACTTTAGAACTCATCAGCCAGTATCTTCTCGCTGATCAGTACTTCA
CTTCTTCAATTGATCATACCCATAGCTTCAAAAATATCTCAAACCTTCCT
CAAAGCCCGAGCTTATTCAACAACCCAACAACAACTACAACAGCAACAAC
AGTTACTACTACAACTGATCGTGATAATATAAACAGCAGAAACAAGCCTT
CAAGCACTTTAAAACAACGGAAGCCGGCCTGTGTAAAAAACGTAACCATA
CCCCAAACTACAAGCTTCAATTTGATGAGCTGCTCCAATGTTAATGATGA
TGCTGATAACCCAGTTGCTGTGAAAAATAAAGATCCGGATGCTGCTGCTG
ATGATAATAATAATAATAATAATAACAATATTGAGGAAAAGCATTACAGA
GGAGTAAGGAGACGGCCGTGGGGCAGGTATGCAGCTGAAATCCGGGACCC
GAATAGAAAAGGGAGCCGGGTTTGGCTTGGAACTTTTGATACTGCCGTTG
AAGCCGCCAAAGCTTATGACAACTCTGCGTTTAGGCTGCGTGGAAGCAAA
GCGATATTGAATTTCCCTCTCGAAGTTGGCGGGACTTTGGATTCTAAAGT
GGAAGTTGACC
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