CX296514

Overview
NameCX296514
Unique NameCX296514
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296514_ssr404 microsatellite CX296514_ssr404:404..424. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15080 contig Ccv1_Contig15080:21..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ESR2_ARATH (Ethylene-responsive transcription factor ESR2 OS=Arabidopsis thaliana GN=ESR2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.597e-15
Identity = 42/57 (73.68%), Postives = 44/57 (77.19%), Query Frame = 1
Query:  445 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNF 615
            YRGVRRRPWGRYAAEIRDP  K  R WLGTFDTA EAA AYD +A  +RG KA  NF
Sbjct:   58 YRGVRRRPWGRYAAEIRDPLSK-ERRWLGTFDTAEEAACAYDCAARAMRGLKARTNF 113          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF87_ARATH (Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana GN=ERF087 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.597e-15
Identity = 42/62 (67.74%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  430 IEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNF 615
            IEE  Y GVRRRPWGRYAAEIR+P  K  R WLGTFDTA EAA AYD +A  +RG  A  NF
Sbjct:   34 IEEIKYVGVRRRPWGRYAAEIRNPTTK-ERYWLGTFDTAEEAALAYDRAARSIRGLTARTNF 94          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF86_ARATH (Ethylene-responsive transcription factor ERF086 OS=Arabidopsis thaliana GN=ERF086 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.123e-14
Identity = 40/61 (65.57%), Postives = 45/61 (73.77%), Query Frame = 1
Query:  433 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNF 615
            E   + GVRRRPWGRYAAEIRDP  K  R WLGTFDTA EAA AYD +A  +RG++A  NF
Sbjct:   32 EPGRFLGVRRRPWGRYAAEIRDPTTK-ERHWLGTFDTAHEAALAYDRAALSMRGTQARTNF 91          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: LEP_ARATH (Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.501e-14
Identity = 39/57 (68.42%), Postives = 44/57 (77.19%), Query Frame = 1
Query:  445 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNF 615
            + GVRRRPWGRYAAEIRDP  K  R WLGTFDTA EAA AYD +A  +RG++A  NF
Sbjct:   20 FLGVRRRPWGRYAAEIRDPTTK-ERHWLGTFDTAEEAALAYDRAARSMRGTRARTNF 75          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: RAP24_ARATH (Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.267e-14
Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = 1
Query:  439 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            K YRGVR+R WG++ AEIR P R  +R+WLGTFDTA EAA AYD +A++LRG  A LNFP
Sbjct:  150 KLYRGVRQRHWGKWVAEIRLP-RNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFP 208          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF58_ARATH (Ethylene-responsive transcription factor ERF058 OS=Arabidopsis thaliana GN=ERF058 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.267e-14
Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = 1
Query:  439 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            K YRGVR+R WG++ AEIR P R  +R+WLGTFDTA EAA AYD +A++LRG  A LNFP
Sbjct:   81 KLYRGVRQRHWGKWVAEIRLP-RNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFP 139          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF60_ARATH (Ethylene-responsive transcription factor ERF060 OS=Arabidopsis thaliana GN=ERF060 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.267e-14
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 1
Query:  436 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            +K YRGVR+R WG++ AEIR P  + +R+WLGTFDTA EAA AYD +A++LRG  A LNFP
Sbjct:   90 QKLYRGVRQRHWGKWVAEIRLPKNR-TRLWLGTFDTAEEAAMAYDLAAYKLRGEFARLNFP 149          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: RAP21_ARATH (Ethylene-responsive transcription factor RAP2-1 OS=Arabidopsis thaliana GN=RAP2-1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.572e-14
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 1
Query:  439 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            K YRG+RRR WG++ AEIR+PN++ SR+WLG++ T + AA+AYD + F LRG  A LNFP
Sbjct:   29 KPYRGIRRRKWGKWVAEIREPNKR-SRLWLGSYTTDIAAARAYDVAVFYLRGPSARLNFP 87          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: DRE2D_ARATH (Dehydration-responsive element-binding protein 2D OS=Arabidopsis thaliana GN=DREB2D PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14
Identity = 36/58 (62.07%), Postives = 48/58 (82.76%), Query Frame = 1
Query:  445 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            Y+GVR+R WG++ AEIR+PNR G+R+WLGTFDT+ EAA AYD++A +L G +A LN P
Sbjct:   42 YKGVRQRTWGKWVAEIREPNR-GARLWLGTFDTSREAALAYDSAARKLYGPEAHLNLP 98          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: RA210_ARATH (Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana GN=RAP2-10 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.621e-13
Identity = 34/66 (51.52%), Postives = 48/66 (72.73%), Query Frame = 1
Query:  436 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLEVGG 633
            +K Y+G+R R WG++ AEIR+PN++ SR+WLG++ T   AA+AYD + F LRG  A LNFP  + G
Sbjct:   27 DKPYKGIRMRKWGKWVAEIREPNKR-SRIWLGSYSTPEAAARAYDTAVFYLRGPSARLNFPELLAG 91          
The following BLAST results are available for this feature:
BLAST of CX296514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
ESR2_ARATH8.597e-1573.68Ethylene-responsive transcription factor ESR2 OS=A... [more]
ERF87_ARATH8.597e-1567.74Ethylene-responsive transcription factor ERF087 OS... [more]
ERF86_ARATH1.123e-1465.57Ethylene-responsive transcription factor ERF086 OS... [more]
LEP_ARATH2.501e-1468.42Ethylene-responsive transcription factor LEP OS=Ar... [more]
RAP24_ARATH3.267e-1465.00Ethylene-responsive transcription factor RAP2-4 OS... [more]
ERF58_ARATH3.267e-1465.00Ethylene-responsive transcription factor ERF058 OS... [more]
ERF60_ARATH4.267e-1462.30Ethylene-responsive transcription factor ERF060 OS... [more]
RAP21_ARATH5.572e-1458.33Ethylene-responsive transcription factor RAP2-1 OS... [more]
DRE2D_ARATH7.278e-1462.07Dehydration-responsive element-binding protein 2D ... [more]
RA210_ARATH1.621e-1351.52Ethylene-responsive transcription factor RAP2-10 O... [more]

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Properties
Property NameValue
Genbank descriptionC05142C04SK FerrChloL1 Citrus clementina cDNA clone C05142C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296514 ID=CX296514; Name=CX296514; organism=Citrus clementina; type=EST; length=661bp
GAGGCATTTACCTTTCATCTTACCTTCAATATGGCATCTCTGAATGAAGC
ATCAACTTTAGAACTCATCAGCCAGTATCTTCTCGCTGATCAGTACTTCA
CTTCTTCAATTGATCATACCCATAGCTTCAAAAATATCTCAAACCTTCCT
CAAAGCCCGAGCTTATTCAACAACCCAACAACAACTACAACAGCAACAAC
AGTTACTACTACAACTGATCGTGATAATATAAACAGCAGAAACAAGCCTT
CAAGCACTTTAAAACAACGGAAGCCGGCCTGTGTAAAAAACGTAACCATA
CCCCAAACTACAAGCTTCAATTTGATGAGCTGCTCCAATGTTAATGATGA
TGCTGATAACCCAGTTGCTGTGAAAAATAAAGATCCGGATGCTGCTGCTG
ATGATAATAATAATAATAATAATAACAATATTGAGGAAAAGCATTACAGA
GGAGTAAGGAGACGGCCGTGGGGCAGGTATGCAGCTGAAATCCGGGACCC
GAATAGAAAAGGGAGCCGGGTTTGGCTTGGAACTTTTGATACTGCCGTTG
AAGCCGCCAAAGCTTATGACAACTCTGCGTTTAGGCTGCGTGGAAGCAAA
GCGATATTGAATTTCCCTCTCGAAGTTGGCGGGACTTTGGATTCTAAAGT
GGAAGTTGACC
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