CX296514

Overview
NameCX296514
Unique NameCX296514
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296514_ssr404 microsatellite CX296514_ssr404:404..424. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15080 contig Ccv1_Contig15080:21..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF88_ARATH (Ethylene-responsive transcription factor ERF088 OS=Arabidopsis thaliana GN=ERF088 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.621e-13
Identity = 40/62 (64.52%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  430 IEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNF 615
            ++E  Y GVRRRPWGRYAAEIR+P  K  R WLGTFDTA EAA AYD +A  + GS A  NF
Sbjct:   16 LQEGKYLGVRRRPWGRYAAEIRNPFTK-ERHWLGTFDTAEEAAFAYDVAARSISGSLATTNF 76          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF61_ARATH (Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana GN=ERF061 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.621e-13
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 1
Query:  433 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            ++K YRGVR+R WG++ AEIR P  +  RVWLGT+DTA  AA AYD +A++LRG  A LNFP
Sbjct:  132 KKKLYRGVRQRHWGKWVAEIRLPQNR-MRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFP 192          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF57_ARATH (Ethylene-responsive transcription factor ERF057 OS=Arabidopsis thaliana GN=ERF057 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.118e-13
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 1
Query:  439 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            K YRGVR+R WG++ AEIR P  + +R+WLGTF+TA EAA AYD +A ++RG  A LNFP
Sbjct:  109 KLYRGVRQRQWGKWVAEIRLPKNR-TRLWLGTFETAQEAALAYDQAAHKIRGDNARLNFP 167          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: DRE2A_ARATH (Dehydration-responsive element-binding protein 2A OS=Arabidopsis thaliana GN=DREB2A PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.118e-13
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 1
Query:  445 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            +RGVR+R WG++ AEIR+PNR GSR+WLGTF TA EAA AYD +A  + G  A LNFP
Sbjct:   79 FRGVRQRIWGKWVAEIREPNR-GSRLWLGTFPTAQEAASAYDEAAKAMYGPLARLNFP 135          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: CRF5_ARATH (Ethylene-responsive transcription factor CRF5 OS=Arabidopsis thaliana GN=CRF5 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.118e-13
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 1
Query:  445 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNF 615
            YRGVR+RPWG++AAEIRDP+ + +R+WLGTF TA EAA  YD +A R++G  A  NF
Sbjct:   99 YRGVRQRPWGKFAAEIRDPSSR-TRLWLGTFATAEEAAIGYDRAAIRIKGHNAQTNF 154          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF62_ARATH (Ethylene-responsive transcription factor ERF062 OS=Arabidopsis thaliana GN=ERF062 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.766e-13
Identity = 38/60 (63.33%), Postives = 46/60 (76.67%), Query Frame = 1
Query:  439 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            K YRGVR+R WG++ AEIR P R  +RVWLGTF+TA +AA AYD +A+ LRG  A LNFP
Sbjct:  230 KLYRGVRQRHWGKWVAEIRLP-RNRTRVWLGTFETAEQAAMAYDTAAYILRGEFAHLNFP 288          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF42_ARATH (Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.766e-13
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 1
Query:  433 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            E+  YRG R R WG++ +EIR+P RK SR+WLGTF TA  AA+A+D +A  ++GS AILNFP
Sbjct:   22 EKGVYRGARMRSWGKWVSEIREP-RKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFP 82          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF56_ARATH (Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.612e-13
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 1
Query:  445 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            YRGVR+R WG++ AEIR P  + +R+WLGTF+TA +AA AYD +AF+LRG  A LNFP
Sbjct:   71 YRGVRQRHWGKWVAEIRLPKNR-TRLWLGTFETAEKAALAYDQAAFQLRGDIAKLNFP 127          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: DRE2G_ARATH (Dehydration-responsive element-binding protein 2G OS=Arabidopsis thaliana GN=DREB2G PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.612e-13
Identity = 35/56 (62.50%), Postives = 47/56 (83.93%), Query Frame = 1
Query:  445 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILN 612
            +RGVR+R WG++ AEIR+PNR G+R+WLGTF+T+VEAA AYD +A +L G +A LN
Sbjct:   34 FRGVRQRTWGKWVAEIREPNR-GTRLWLGTFNTSVEAAMAYDEAAKKLYGHEAKLN 88          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF23_ARATH (Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana GN=ERF023 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.717e-13
Identity = 36/61 (59.02%), Postives = 46/61 (75.41%), Query Frame = 1
Query:  445 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLEV 627
            Y GVR+R WG++ +EIR+P RK SR+WLG+F     AAKAYD +AF L+G KA LNFP E+
Sbjct:   45 YHGVRKRRWGKWVSEIREP-RKKSRIWLGSFPVPEMAAKAYDVAAFCLKGRKAQLNFPEEI 104          
The following BLAST results are available for this feature:
BLAST of CX296514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
ERF88_ARATH1.621e-1364.52Ethylene-responsive transcription factor ERF088 OS... [more]
ERF61_ARATH1.621e-1359.68Ethylene-responsive transcription factor ERF061 OS... [more]
ERF57_ARATH2.118e-1360.00Ethylene-responsive transcription factor ERF057 OS... [more]
DRE2A_ARATH2.118e-1363.79Dehydration-responsive element-binding protein 2A ... [more]
CRF5_ARATH2.118e-1361.40Ethylene-responsive transcription factor CRF5 OS=A... [more]
ERF62_ARATH2.766e-1363.33Ethylene-responsive transcription factor ERF062 OS... [more]
ERF42_ARATH2.766e-1358.06Ethylene-responsive transcription factor ERF042 OS... [more]
ERF56_ARATH3.612e-1362.07Ethylene-responsive transcription factor ERF056 OS... [more]
DRE2G_ARATH3.612e-1362.50Dehydration-responsive element-binding protein 2G ... [more]
ERF23_ARATH4.717e-1359.02Ethylene-responsive transcription factor ERF023 OS... [more]

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Properties
Property NameValue
Genbank descriptionC05142C04SK FerrChloL1 Citrus clementina cDNA clone C05142C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296514 ID=CX296514; Name=CX296514; organism=Citrus clementina; type=EST; length=661bp
GAGGCATTTACCTTTCATCTTACCTTCAATATGGCATCTCTGAATGAAGC
ATCAACTTTAGAACTCATCAGCCAGTATCTTCTCGCTGATCAGTACTTCA
CTTCTTCAATTGATCATACCCATAGCTTCAAAAATATCTCAAACCTTCCT
CAAAGCCCGAGCTTATTCAACAACCCAACAACAACTACAACAGCAACAAC
AGTTACTACTACAACTGATCGTGATAATATAAACAGCAGAAACAAGCCTT
CAAGCACTTTAAAACAACGGAAGCCGGCCTGTGTAAAAAACGTAACCATA
CCCCAAACTACAAGCTTCAATTTGATGAGCTGCTCCAATGTTAATGATGA
TGCTGATAACCCAGTTGCTGTGAAAAATAAAGATCCGGATGCTGCTGCTG
ATGATAATAATAATAATAATAATAACAATATTGAGGAAAAGCATTACAGA
GGAGTAAGGAGACGGCCGTGGGGCAGGTATGCAGCTGAAATCCGGGACCC
GAATAGAAAAGGGAGCCGGGTTTGGCTTGGAACTTTTGATACTGCCGTTG
AAGCCGCCAAAGCTTATGACAACTCTGCGTTTAGGCTGCGTGGAAGCAAA
GCGATATTGAATTTCCCTCTCGAAGTTGGCGGGACTTTGGATTCTAAAGT
GGAAGTTGACC
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