CX296514

Overview
NameCX296514
Unique NameCX296514
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296514_ssr404 microsatellite CX296514_ssr404:404..424. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15080 contig Ccv1_Contig15080:21..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF08_ARATH (Ethylene-responsive transcription factor ERF008 OS=Arabidopsis thaliana GN=ERF008 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.717e-13
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 1
Query:  439 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLEVGG 633
            K Y+G+R R WG++ AEIR+PN++ SR+WLG++ T   AA+AYD + F LRG  A LNFP  + G
Sbjct:   26 KPYKGIRMRKWGKWVAEIREPNKR-SRIWLGSYATPEAAARAYDTAVFYLRGPSARLNFPELLAG 89          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: DRE2B_ARATH (Dehydration-responsive element-binding protein 2B OS=Arabidopsis thaliana GN=DREB2B PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.717e-13
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 1
Query:  445 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLEVGGTLDS 645
            +RGVR+R WG++ AEIR+P + G+R+WLGTF TA +AA AYD +A  + GS A LNFP  VG    S
Sbjct:   78 FRGVRQRIWGKWVAEIREP-KIGTRLWLGTFPTAEKAASAYDEAATAMYGSLARLNFPQSVGSEFTS 143          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: WIN1_ARATH (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.161e-13
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 1
Query:  430 IEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPL---EVGGTLDSKVEV 657
            ++ K +RGVR+R WG + AEIR P  K  R+WLGTF+TA EAA+AYD +A  + G  A  NFPL     G T + K ++
Sbjct:    2 VQTKKFRGVRQRHWGSWVAEIRHPLLK-RRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPLNNNNTGETSEGKTDI 79          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF69_ARATH (Ethylene-responsive transcription factor ERF069 OS=Arabidopsis thaliana GN=ERF069 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.161e-13
Identity = 42/94 (44.68%), Postives = 53/94 (56.38%), Query Frame = 1
Query:  340 VNDDADNPVAVKNKDPXXXXXXXXXXXXXXIEEKHYRGVRRRPWGRYAAEIRDPNRKG--SRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNF 615
            V D +D P   K +                  +K +RGVR+RPWG++AAEIR    KG   R+WLGTF+TA EAA AYDN+A +L G  A  NF
Sbjct:   40 VIDHSDPPEVGKTRFKIRIPASLLAARNTTANKKKFRGVRQRPWGKWAAEIRCGRVKGRPERIWLGTFETAEEAALAYDNAAIQLIGPDAPTNF 133          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF37_ARATH (Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana GN=ERF037 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.047e-13
Identity = 33/58 (56.90%), Postives = 45/58 (77.59%), Query Frame = 1
Query:  445 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            YRGVR R WG++ +EIR+P RK SR+WLGTF T   AA+A+D +A  ++G+ A+LNFP
Sbjct:   43 YRGVRMRTWGKWVSEIREP-RKKSRIWLGTFSTPEMAARAHDAAALTIKGTSAVLNFP 99          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF11_ARATH (Ethylene-responsive transcription factor ERF011 OS=Arabidopsis thaliana GN=ERF011 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.047e-13
Identity = 32/61 (52.46%), Postives = 46/61 (75.41%), Query Frame = 1
Query:  436 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            E+ ++G+R R WG++ AEIR+PN++ SR+WLG++ T   AA+AYD + F LRG  A LNFP
Sbjct:   18 ERPFKGIRMRKWGKWVAEIREPNKR-SRLWLGSYSTPEAAARAYDTAVFYLRGPTATLNFP 77          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF84_ARATH (Ethylene-responsive transcription factor ERF084 OS=Arabidopsis thaliana GN=ERF084 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.051e-12
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 1
Query:  445 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNF 615
            + GVR+RPWGR++AEIRD   +  R WLGTFDTA EAA+AYD +A RLRG+KA  NF
Sbjct:  116 FMGVRKRPWGRWSAEIRDRIGR-CRHWLGTFDTAEEAARAYDAAARRLRGTKAKTNF 171          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF43_ARATH (Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana GN=ERF043 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.051e-12
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 1
Query:  445 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            YRGVR R WG++ +EIR+P RK SR+WLGTF TA  A +A+D +A  ++G+ AILNFP
Sbjct:   19 YRGVRMRSWGKWVSEIREP-RKKSRIWLGTFPTAEMAMRAHDVAAMSIKGTSAILNFP 75          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF35_ARATH (Ethylene-responsive transcription factor ERF035 OS=Arabidopsis thaliana GN=ERF035 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.051e-12
Identity = 43/106 (40.57%), Postives = 58/106 (54.72%), Query Frame = 1
Query:  334 SNVNDDADNPVAVKNKDPXXXXXXXXXXXXXXIEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLEVGGTLDSKV 651
            SNV+DD  NP +                         YRGVR R WG++ +EIR+P RK SR+WLGT+ TA  AA+A+D +A  ++G+   LNFP E+ G L   V
Sbjct:   59 SNVSDDNKNPTS-------------------------YRGVRMRSWGKWVSEIREP-RKKSRIWLGTYPTAEMAARAHDVAALAIKGNSGFLNFP-ELSGLLPRPV 137          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF10_ARATH (Ethylene-responsive transcription factor ERF010 OS=Arabidopsis thaliana GN=ERF010 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.051e-12
Identity = 32/61 (52.46%), Postives = 46/61 (75.41%), Query Frame = 1
Query:  436 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            ++ Y+G+R R WG++ AEIR+PN++ SR+WLG++ T   AA+AYD + F LRG  A LNFP
Sbjct:   18 DRPYKGIRMRKWGKWVAEIREPNKR-SRLWLGSYSTPEAAARAYDTAVFYLRGPTARLNFP 77          
The following BLAST results are available for this feature:
BLAST of CX296514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
ERF08_ARATH4.717e-1352.31Ethylene-responsive transcription factor ERF008 OS... [more]
DRE2B_ARATH4.717e-1355.22Dehydration-responsive element-binding protein 2B ... [more]
WIN1_ARATH6.161e-1348.10Ethylene-responsive transcription factor WIN1 OS=A... [more]
ERF69_ARATH6.161e-1344.68Ethylene-responsive transcription factor ERF069 OS... [more]
ERF37_ARATH8.047e-1356.90Ethylene-responsive transcription factor ERF037 OS... [more]
ERF11_ARATH8.047e-1352.46Ethylene-responsive transcription factor ERF011 OS... [more]
ERF84_ARATH1.051e-1264.91Ethylene-responsive transcription factor ERF084 OS... [more]
ERF43_ARATH1.051e-1258.62Ethylene-responsive transcription factor ERF043 OS... [more]
ERF35_ARATH1.051e-1240.57Ethylene-responsive transcription factor ERF035 OS... [more]
ERF10_ARATH1.051e-1252.46Ethylene-responsive transcription factor ERF010 OS... [more]

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Properties
Property NameValue
Genbank descriptionC05142C04SK FerrChloL1 Citrus clementina cDNA clone C05142C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296514 ID=CX296514; Name=CX296514; organism=Citrus clementina; type=EST; length=661bp
GAGGCATTTACCTTTCATCTTACCTTCAATATGGCATCTCTGAATGAAGC
ATCAACTTTAGAACTCATCAGCCAGTATCTTCTCGCTGATCAGTACTTCA
CTTCTTCAATTGATCATACCCATAGCTTCAAAAATATCTCAAACCTTCCT
CAAAGCCCGAGCTTATTCAACAACCCAACAACAACTACAACAGCAACAAC
AGTTACTACTACAACTGATCGTGATAATATAAACAGCAGAAACAAGCCTT
CAAGCACTTTAAAACAACGGAAGCCGGCCTGTGTAAAAAACGTAACCATA
CCCCAAACTACAAGCTTCAATTTGATGAGCTGCTCCAATGTTAATGATGA
TGCTGATAACCCAGTTGCTGTGAAAAATAAAGATCCGGATGCTGCTGCTG
ATGATAATAATAATAATAATAATAACAATATTGAGGAAAAGCATTACAGA
GGAGTAAGGAGACGGCCGTGGGGCAGGTATGCAGCTGAAATCCGGGACCC
GAATAGAAAAGGGAGCCGGGTTTGGCTTGGAACTTTTGATACTGCCGTTG
AAGCCGCCAAAGCTTATGACAACTCTGCGTTTAGGCTGCGTGGAAGCAAA
GCGATATTGAATTTCCCTCTCGAAGTTGGCGGGACTTTGGATTCTAAAGT
GGAAGTTGACC
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