CX296514

Overview
NameCX296514
Unique NameCX296514
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296514_ssr404 microsatellite CX296514_ssr404:404..424. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15080 contig Ccv1_Contig15080:21..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF36_ARATH (Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana GN=ERF036 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.373e-12
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 1
Query:  445 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            YRGVR R WG++ +EIR P RK +R+WLGTF TA  AA+A+D +A  ++GS A+LNFP
Sbjct:   79 YRGVRMRSWGKWVSEIRQP-RKKTRIWLGTFVTADMAARAHDVAALTIKGSSAVLNFP 135          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF34_ARATH (Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.373e-12
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 1
Query:  436 EKH--YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLEVG 630
            +KH  YRGVR R WG++ +EIR+P RK SR+WLGT+ TA  AA+A+D +A  ++G+ A LNFP   G
Sbjct:   95 DKHPTYRGVRMRSWGKWVSEIREP-RKKSRIWLGTYPTAEMAARAHDVAALAIKGTTAYLNFPKLAG 160          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: TINY_ARATH (Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = 1
Query:  445 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            YRGVR+R WG++ +EIR+P RK SR+WLGTF +   AA+A+D +A  ++G+ AILNFP
Sbjct:   36 YRGVRKRNWGKWVSEIREP-RKKSRIWLGTFPSPEMAARAHDVAALSIKGASAILNFP 92          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF22_ARATH (Ethylene-responsive transcription factor ERF022 OS=Arabidopsis thaliana GN=ERF022 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 32/63 (50.79%), Postives = 46/63 (73.02%), Query Frame = 1
Query:  430 IEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            + +  YRG+RRR WG++ +EIR+P +K +R+WLG+++TA  AA AYD +A  LRG    LNFP
Sbjct:   15 VNQLSYRGIRRRKWGKWVSEIREPGKK-TRIWLGSYETAEMAAAAYDAAALHLRGRGTNLNFP 76          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: DREB3_ARATH (Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 1
Query:  445 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            YRGVR R WG++ +EIR+P RK SR+WLGTF T   AA+A+D +A  ++G+ AILNFP
Sbjct:   51 YRGVRMRNWGKWVSEIREP-RKKSRIWLGTFPTPEMAARAHDVAALSIKGTAAILNFP 107          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF21_ARATH (Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana GN=ERF021 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.341e-12
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 1
Query:  445 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            YRGVR+R WG++ +EIR+P  K +R+WLG+F+T   AA AYD +AF  RG +A LNFP
Sbjct:   24 YRGVRKRKWGKWVSEIREPGTK-NRIWLGSFETPEMAATAYDVAAFHFRGREARLNFP 80          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: DRE2F_ARATH (Dehydration-responsive element-binding protein 2F OS=Arabidopsis thaliana GN=DREB2F PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 1
Query:  445 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            YRGVR+R WG++ AEIR+P +K +R+WLG+F TA EAA AYD +A +L G  A LN P
Sbjct:   28 YRGVRQRTWGKWVAEIREP-KKRARLWLGSFATAEEAAMAYDEAALKLYGHDAYLNLP 84          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: DRE2A_ORYSJ (Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. japonica GN=DREB2A PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 1
Query:  445 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNF 615
            YRGVR+R WG++ AEIR+PNR G R+WLG+F TA+EAA AYD +A  + G  A +NF
Sbjct:   76 YRGVRQRTWGKWVAEIREPNR-GRRLWLGSFPTALEAAHAYDEAARAMYGPTARVNF 131          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: DRE2A_ORYSI (Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. indica GN=DREB2A PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 1
Query:  445 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNF 615
            YRGVR+R WG++ AEIR+PNR G R+WLG+F TA+EAA AYD +A  + G  A +NF
Sbjct:   76 YRGVRQRTWGKWVAEIREPNR-GRRLWLGSFPTALEAAHAYDEAARAMYGPTARVNF 131          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF15_ARATH (Ethylene-responsive transcription factor ERF015 OS=Arabidopsis thaliana GN=ERF015 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.993e-12
Identity = 31/62 (50.00%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  439 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLE 624
            K YRGVR+R WG++ +EIR P + G R+WLG++D   +AA+AYD + F +RG K + NFP +
Sbjct:   25 KCYRGVRKRSWGKWVSEIRVP-KTGRRIWLGSYDAPEKAARAYDAALFCIRGEKGVYNFPTD 85          
The following BLAST results are available for this feature:
BLAST of CX296514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
ERF36_ARATH1.373e-1258.62Ethylene-responsive transcription factor ERF036 OS... [more]
ERF34_ARATH1.373e-1253.73Ethylene-responsive transcription factor ERF034 OS... [more]
TINY_ARATH1.793e-1256.90Ethylene-responsive transcription factor TINY OS=A... [more]
ERF22_ARATH1.793e-1250.79Ethylene-responsive transcription factor ERF022 OS... [more]
DREB3_ARATH1.793e-1258.62Dehydration-responsive element-binding protein 3 O... [more]
ERF21_ARATH2.341e-1256.90Ethylene-responsive transcription factor ERF021 OS... [more]
DRE2F_ARATH3.058e-1258.62Dehydration-responsive element-binding protein 2F ... [more]
DRE2A_ORYSJ3.058e-1259.65Dehydration-responsive element-binding protein 2A ... [more]
DRE2A_ORYSI3.058e-1259.65Dehydration-responsive element-binding protein 2A ... [more]
ERF15_ARATH3.993e-1250.00Ethylene-responsive transcription factor ERF015 OS... [more]

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Properties
Property NameValue
Genbank descriptionC05142C04SK FerrChloL1 Citrus clementina cDNA clone C05142C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296514 ID=CX296514; Name=CX296514; organism=Citrus clementina; type=EST; length=661bp
GAGGCATTTACCTTTCATCTTACCTTCAATATGGCATCTCTGAATGAAGC
ATCAACTTTAGAACTCATCAGCCAGTATCTTCTCGCTGATCAGTACTTCA
CTTCTTCAATTGATCATACCCATAGCTTCAAAAATATCTCAAACCTTCCT
CAAAGCCCGAGCTTATTCAACAACCCAACAACAACTACAACAGCAACAAC
AGTTACTACTACAACTGATCGTGATAATATAAACAGCAGAAACAAGCCTT
CAAGCACTTTAAAACAACGGAAGCCGGCCTGTGTAAAAAACGTAACCATA
CCCCAAACTACAAGCTTCAATTTGATGAGCTGCTCCAATGTTAATGATGA
TGCTGATAACCCAGTTGCTGTGAAAAATAAAGATCCGGATGCTGCTGCTG
ATGATAATAATAATAATAATAATAACAATATTGAGGAAAAGCATTACAGA
GGAGTAAGGAGACGGCCGTGGGGCAGGTATGCAGCTGAAATCCGGGACCC
GAATAGAAAAGGGAGCCGGGTTTGGCTTGGAACTTTTGATACTGCCGTTG
AAGCCGCCAAAGCTTATGACAACTCTGCGTTTAGGCTGCGTGGAAGCAAA
GCGATATTGAATTTCCCTCTCGAAGTTGGCGGGACTTTGGATTCTAAAGT
GGAAGTTGACC
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