CX296568

Overview
NameCX296568
Unique NameCX296568
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296568 vs. ExPASy Swiss-Prot
Match: ACCO2_MALDO (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Malus domestica GN=ACO2 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.196e-50
Identity = 99/135 (73.33%), Postives = 113/135 (83.70%), Query Frame = 2
Query:    5 LALQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDYMKLYVPLKFQAKEPRFEAMKAVETNVNLGPIATA 409
            L  QDDKVSGLQLLKDG+W+DVPP+ HSIV+NLGDQIEVITNGKYKS+ HRVI+Q+DG  RMS+ASFYNPG DA I PAPALLE+++E    YPKF+F+DYMKLY  LKFQAKEPRFEAMKA ET     P+ TA
Sbjct:  185 LLFQDDKVSGLQLLKDGEWMDVPPVHHSIVINLGDQIEVITNGKYKSIMHRVIAQSDGT-RMSIASFYNPGDDAFISPAPALLEEKSEVSPTYPKFLFDDYMKLYSGLKFQAKEPRFEAMKARETT----PVETA 314          
BLAST of CX296568 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSJ (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. japonica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 4.616e-49
Identity = 96/128 (75.00%), Postives = 110/128 (85.94%), Query Frame = 2
Query:    5 LALQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDYMKLYVPLKFQAKEPRFEAMKAVETNVN 388
            L  QDD+V GLQLLKDG+W+DVPP+RHSIVVNLGDQ+EVITNG+YKSV HRV++QTDG  RMS+ASFYNPGSDAVI PAPAL+ KE E    YPKFVFEDYMKLYV  KF+AKEPRFEA K++ET  +
Sbjct:  191 LLFQDDRVGGLQLLKDGEWVDVPPMRHSIVVNLGDQLEVITNGRYKSVIHRVVAQTDG-NRMSIASFYNPGSDAVISPAPALV-KEEEAVVAYPKFVFEDYMKLYVRHKFEAKEPRFEAFKSMETETS 316          
BLAST of CX296568 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSI (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. indica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 6.028e-49
Identity = 96/128 (75.00%), Postives = 109/128 (85.16%), Query Frame = 2
Query:    5 LALQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDYMKLYVPLKFQAKEPRFEAMKAVETNVN 388
            L  QDD V GLQLLKDG+W+DVPP+RHSIVVNLGDQ+EVITNG+YKSV HRV++QTDG  RMS+ASFYNPGSDAVI PAPAL+ KE E    YPKFVFEDYMKLYV  KF+AKEPRFEA K++ET  +
Sbjct:  191 LLFQDDSVGGLQLLKDGEWVDVPPMRHSIVVNLGDQLEVITNGRYKSVMHRVVAQTDG-NRMSIASFYNPGSDAVISPAPALV-KEEEAVVAYPKFVFEDYMKLYVRHKFEAKEPRFEAFKSMETETS 316          
BLAST of CX296568 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.621e-44
Identity = 91/137 (66.42%), Postives = 103/137 (75.18%), Query Frame = 2
Query:    5 LALQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDYMKLYVPLKFQAKEPRFEAMKAVETNVNLGPIATA*T 415
            L  QDDKV+GLQLLKDG WIDVPPL HSIV+NLGDQ+EVITNG+YKS+ HRV++Q +G  RMS+ASFYNPGSDA I PA +L  KE E    YP FVF+DYMKLY  +KFQ KEPRFEAMK       L P A   T
Sbjct:  188 LLFQDDKVTGLQLLKDGDWIDVPPLNHSIVINLGDQLEVITNGRYKSMMHRVVTQKEG-NRMSIASFYNPGSDAEISPASSLACKETE----YPSFVFDDYMKLYAGVKFQPKEPRFEAMKNANAVTELNPTAAVET 319          
BLAST of CX296568 vs. ExPASy Swiss-Prot
Match: ACCO_MUSAC (1-aminocyclopropane-1-carboxylate oxidase OS=Musa acuminata GN=MAO1B PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.082e-33
Identity = 68/123 (55.28%), Postives = 89/123 (72.36%), Query Frame = 2
Query:    5 LALQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDYMKLYVPLKFQAKEPRFEAMKAV 373
            L  QDD+V GLQ+LKDG+WIDV PL  +IV+N GDQIEV++NG+YKS  HRV++ + G  R S+ASFYNP   A I PA     +EA    +YPKF+F DYM +Y   K++ KEPRFEA++A+
Sbjct:  185 LLFQDDQVGGLQMLKDGRWIDVQPLADAIVINTGDQIEVLSNGRYKSAWHRVLATSHG-NRRSIASFYNPSLKATIAPAAGAATEEAAPPALYPKFLFGDYMDVYAKQKYEPKEPRFEAVRAI 306          
BLAST of CX296568 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.727e-16
Identity = 43/113 (38.05%), Postives = 70/113 (61.95%), Query Frame = 2
Query:    5 LALQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDYMKLYVPLKFQAK 343
            L +Q ++V+GL + KD +W+ + P+  + VVN+GD IE+++NG YKS+EHR +  TD E R+S+A+F++P     I P P L+++   K   Y    +EDY+     +K   K
Sbjct:  236 LLIQVNEVNGLHIKKDEKWVPIKPILGAFVVNIGDVIEIMSNGIYKSIEHRAVINTDKE-RLSIAAFHDPEYGTKIGPLPDLVKENGVK---YKTIDYEDYLIRSSNIKLDGK 344          
BLAST of CX296568 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.147e-15
Identity = 37/84 (44.05%), Postives = 62/84 (73.81%), Query Frame = 2
Query:   11 LQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPALLEKE 262
            +Q + V GLQ+ KDG+W+ V PL ++ +VN+GD +E+ITNG Y+S+EHR +  ++ E R+S+A+F+N G    + PA +L+E++
Sbjct:  243 MQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKE-RLSIATFHNVGMYKEVGPAKSLVERQ 325          
BLAST of CX296568 vs. ExPASy Swiss-Prot
Match: FLS_CITUN (Flavonol synthase/flavanone 3-hydroxylase OS=Citrus unshiu GN=FLS PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.438e-15
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = 2
Query:   11 LQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDYMKL 316
            L  ++V GLQ+ KD +WID   + +++V+++GDQIE+++NGKYK+V HR     D + RMS   F  P +D V+ P P L++ E   K    KF    Y KL
Sbjct:  230 LVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVNKD-KTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSYCKL 330          
BLAST of CX296568 vs. ExPASy Swiss-Prot
Match: FLS_PETHY (Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 41/102 (40.20%), Postives = 60/102 (58.82%), Query Frame = 2
Query:   11 LQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDYMKL 316
            L  ++V GLQ+ KDG W DV  + ++++V++GDQ+E+++NGKYKSV HR     D + RMS   F  P S+  + P P LL +    K    K+    Y KL
Sbjct:  243 LVPNEVQGLQVFKDGHWYDVKYIPNALIVHIGDQVEILSNGKYKSVYHRTTVNKD-KTRMSWPVFLEPPSEHEVGPIPKLLSEANPPKFKTKKYKDYVYCKL 343          
BLAST of CX296568 vs. ExPASy Swiss-Prot
Match: G2OX_PHACN (Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.393e-13
Identity = 40/102 (39.22%), Postives = 65/102 (63.73%), Query Frame = 2
Query:   11 LQDDKVSGLQL-LKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDYMK 313
            L+ +  SGLQ+ L DG W+ VPP + S  +N+GD ++V+TNG++KSV+HRV++ T  + R+S+  F  P     I P P+++ K  E   +Y +F + +Y K
Sbjct:  213 LRSNSTSGLQICLTDGTWVSVPPDQTSFFINVGDALQVMTNGRFKSVKHRVLADTT-KSRLSMIYFGGPALSENIAPLPSVMLKGEE--CLYKEFTWCEYKK 311          
The following BLAST results are available for this feature:
BLAST of CX296568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
ACCO2_MALDO3.196e-5073.331-aminocyclopropane-1-carboxylate oxidase 2 OS=Mal... [more]
ACCO1_ORYSJ4.616e-4975.001-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO1_ORYSI6.028e-4975.001-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO1_BRAJU2.621e-4466.421-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]
ACCO_MUSAC2.082e-3355.281-aminocyclopropane-1-carboxylate oxidase OS=Musa ... [more]
NCS1_COPJA6.727e-1638.05S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
SRG1_ARATH1.147e-1544.05Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
FLS_CITUN7.438e-1541.18Flavonol synthase/flavanone 3-hydroxylase OS=Citru... [more]
FLS_PETHY1.403e-1340.20Flavonol synthase/flavanone 3-hydroxylase OS=Petun... [more]
G2OX_PHACN2.393e-1339.22Gibberellin 2-beta-dioxygenase OS=Phaseolus coccin... [more]

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Properties
Property NameValue
Genbank descriptionC05146B12SK FerrChloL1 Citrus clementina cDNA clone C05146B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296568 ID=CX296568; Name=CX296568; organism=Citrus clementina; type=EST; length=542bp
GAGGCTTGCTCTTCAGGATGACAAAGTCAGTGGCCTTCAGCTTCTTAAAG
ATGGCCAGTGGATTGATGTGCCCCCATTGCGCCACTCCATTGTTGTCAAC
CTCGGTGACCAAATTGAGGTGATCACCAATGGAAAGTACAAGAGTGTGGA
GCACAGAGTGATTTCTCAAACCGACGGCGAGGGCCGGATGTCCCTAGCTT
CATTCTACAATCCTGGAAGTGATGCTGTGATCTATCCAGCACCAGCATTG
CTTGAAAAAGAAGCTGAGAAGAAACAAGTGTACCCAAAATTTGTTTTTGA
GGACTACATGAAGCTCTATGTTCCCCTCAAGTTCCAGGCCAAGGAACCAA
GATTTGAAGCCATGAAAGCTGTGGAAACTAATGTTAACTTGGGTCCAATT
GCCACCGCTTAAACTATTATTTTATAGCCAAATTATTTTTATCTGCTGGA
GTGGTGTGACATCCATTTATATTATTTGTAGACAGTAACAAATGTAACTA
CTCTGTGATAGTAGTCTCTTCCAAATAAAGGGGGGGCCCGGT
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