CX296726

Overview
NameCX296726
Unique NameCX296726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12872 contig Ccv1_Contig12872:500..1223. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ROCA_BACCN (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=rocA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.540e-31
Identity = 83/250 (33.20%), Postives = 134/250 (53.60%), Query Frame = 1
Query:   10 KYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMI-PLQM-------ELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVG-PPEESCDITPVVSESSANFIEGLVMDAKQKGATFC--QEYRREGNLIWPLLLDNVRPDMRI 723
            +Y   S IPLGV + I P+N+P  +       AL++GN+++LKP +   V A   +     AG P G+++ + G GSE+GD+L  HP    ISFTG  D GI I ++A  + P Q+       E+GGKD  +V ++ADL+L A +I+   F +SGQ+C+A    ++ E V D +          LTVG P E+  ++ PV  +++ + +   V   K++G      +    +G  I P ++ +V  D R+
Sbjct:  163 EYNRFSYIPLGVGVIISPWNFPFAIMAGMTTAALVSGNTVLLKPASTTPVVAAKFMEVLEEAGLPAGVVNFIPGSGSEVGDYLVDHPRTRFISFTGSRDVGIRIYERAAKVHPGQIWLKRVIAEMGGKDTIVVDKEADLELAAKSIVASAFGFSGQKCSACSRAVIHEEVYDQVLNRAVELTKELTVGNPAEKGTNMGPVNDQAAFDKVMSYVAIGKEEGKIVAGGEGDDSKGWFIQPTIVADVAEDARL 412          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: LADH_METVS (Lactaldehyde dehydrogenase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=Mevan_0796 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.540e-31
Identity = 78/232 (33.62%), Postives = 127/232 (54.74%), Query Frame = 1
Query:   22 TSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMV----HCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRREGNLIWPLLLD 699
            T   P+GVV AI PFN+P+NL   KI PA+  GN++VL P ++  + A+++     H        +G+ +  TG G  +GD +  +  +N +SFTG  + G  ISK + M  + +ELGG +  IVL+D+D++L A + +K  F  SGQ C +V  V+V E V ++           L +G P +E  D+ P+++  SA  +E L+ ++  +G        R  +LI P +L+
Sbjct:  125 TKKEPVGVVGAITPFNFPLNLITHKIGPAIATGNAVVLHPSSKAPITAIYLTKVIEHVLKKMNIERGVFNLTTGNGEIVGDEIAKNEKINFLSFTGSVEVGELISKSSYMKKVALELGGNNPLIVLKDSDIELAAKSAVKSKFLNSGQVCISVGKVIVEEEVLETFTKKVIEETKKLVLGNPLDEKTDLGPLITPESALRVEILIKESISEGGELLIGGNRSNSLISPAVLN 356          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BADH_SPIOL (Betaine aldehyde dehydrogenase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.540e-31
Identity = 86/239 (35.98%), Postives = 125/239 (52.30%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAGMI--PLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATFC-----QEYRREGNLIWPLLLDNVRPDMRI 723
            PLGVV  I P+NYP+ +A  KIAPAL AG + VLKP    +V  L      +  G P G+++ +TG G + G  L  HP V+ I+FTG   TG  +   A  +  P+ +ELGGK   +V ED D+D V    I G F  +GQ C+A   +LV ES+A             + +  P EE C + PV+S+   + I   +  AK +GAT        E+ ++G  I P ++ ++   M+I
Sbjct:  148 PLGVVGLISPWNYPLLMATWKIAPALAAGCTAVLKPSELASVTCLEFGEVCNEVGLPPGVLNILTGLGPDAGAPLVSHPDVDKIAFTGSSATGSKVMASAAQLVKPVTLELGGKSPIVVFEDVDIDKVVEWTIFGCFWTNGQICSATSRLLVHESIAAEFVDKLVKWTKNIKISDPFEEGCRLGPVISKGQYDKIMKFISTAKSEGATILYGGSRPEHLKKGYYIEPTIVTDISTSMQI 386          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BADH_BETVU (Betaine aldehyde dehydrogenase, chloroplastic OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.540e-31
Identity = 84/239 (35.15%), Postives = 125/239 (52.30%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAGMI--PLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATFC-----QEYRREGNLIWPLLLDNVRPDMRI 723
            P+GVV  I P+NYP+ +A  KIAPAL AG + VLKP    ++  L      +  G P G+++ VTG G + G  L  HP V+ ++FTG   TG  +   A  +  P+ +ELGGK   IV ED D+D V    + G F  +GQ C+A   +LV ES+A             + +  P EE C + PV+S+   + I   +  AK +GAT        E+ ++G  I P ++ ++   M+I
Sbjct:  151 PIGVVGLITPWNYPLLMATWKIAPALAAGCTAVLKPSELASITCLEFGEVCNEVGLPPGVLNIVTGLGPDAGAPLAAHPDVDKVAFTGSSATGSKVMASAAQLVKPVTLELGGKSPIIVFEDVDIDQVVEWTMFGCFWTNGQICSATSRLLVHESIAAEFIDRLVKWTKNIKISDPFEEGCRLGPVISKGQYDKIMKFISTAKSEGATILCGGSRPEHLKKGYFIEPTIISDISTSMQI 389          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BADH2_ARATH (Betaine aldehyde dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=ALDH10A9 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.540e-31
Identity = 84/239 (35.15%), Postives = 125/239 (52.30%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMI--PLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATFC-----QEYRREGNLIWPLLLDNVRPDMRI 723
            P+GVV  I P+NYP+ +AV K+AP+L AG + +LKP    ++  L +       G P G+++ +TG G+E G  L  HP V+ I FTG   TG SI   A  +  P+ +ELGGK   IV +D D+D      + G F  +GQ C+A   +LV E +AD            + +  P EE C + PVVS+     +   V +A+ +GAT        E+ ++G  + P ++ NV   M I
Sbjct:  151 PIGVVGMITPWNYPLLMAVWKVAPSLAAGCTAILKPSELASLTCLELADICREVGLPPGVLNILTGLGTEAGAPLASHPHVDKIVFTGSTTTGSSIMTSAAKLVKPVSLELGGKSPIIVFDDVDIDKAVEWTMFGCFWTNGQICSATSRLLVHERIADEFLDKLVKWTKNIKISDPFEEGCRLGPVVSKGQYERVLKFVSNARNEGATVLCGGVRPEHLKKGYFVEPAIVSNVTTSMEI 389          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ROCA_GEOSW (1-pyrroline-5-carboxylate dehydrogenase OS=Geobacillus sp. (strain WCH70) GN=rocA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.930e-31
Identity = 82/243 (33.74%), Postives = 131/243 (53.91%), Query Frame = 1
Query:   31 IPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMI-PLQM-------ELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVG-PPEESCDITPVVSESSANFIEGLVMDAKQKG--ATFCQEYRREGNLIWPLLLDNVRPDMRI 723
            IPLGV + I P+N+P  +       +L+ GN+++LKP +   V A         AG P G+++ + G G+E+GD+L  HP    ISFTG  D GI I ++A  + P Q+       E+GGKD  +V ++ADL+L A +I+   F +SGQ+C+A    +++E V D +          L VG P ++S  + PV+ +S+ N I   +   K++G   T  +    +G  I P +  +V P+ RI
Sbjct:  170 IPLGVGVVISPWNFPFAIMAGTTVASLVTGNTVLLKPASATPVVAYKFAEVLEEAGLPAGVLNYIPGSGAEVGDYLVDHPRTRFISFTGSRDVGIRIYERAAKVHPGQIWLKRVIAEMGGKDGIVVDKEADLELAAQSIVASAFGFSGQKCSACSRAIIVEDVYDQVLNRVVELTKQLKVGDPADQSTFMGPVIDQSAYNKIMEYIEIGKKEGRLMTGGEGDDSKGFFIQPTVFADVDPNARI 412          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: LADH_META3 (Lactaldehyde dehydrogenase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_1030 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.011e-30
Identity = 80/245 (32.65%), Postives = 134/245 (54.69%), Query Frame = 1
Query:   19 LTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLA----GFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRREGNLIWPLLL----DNVRPDMRI 723
            +T   P+G+V AI PFN+P+NL   KIAPA+  GNS+V  P ++  +  + +             P G+ + +TG+G  +GD +  +  +N +SFTG  + G SI+KKAG   + +ELGG +  I+L+DA+++    + + G F  SGQ C +V  VL+ + VAD            L +G P +E  +I+ ++S  SA  +E L+  +  +G       +RE ++I+P +L    DN+  ++ I
Sbjct:  124 ITKREPVGLVGAITPFNFPLNLFAHKIAPAIAMGNSIVAHPSSKAPMITIELTKIIEKVLKSKKIPLGVFNLLTGEGHIVGDEIVKNNKINKLSFTGSVEVGESITKKAGFKKITLELGGNNPMIILKDANINKAVESCMSGKFLNSGQVCISVGRVLIEQEVADEFINKIVEKVKKLKIGNPLDEDTNISSLISLDSAERVEKLINKSIGQGGKLICGGKRENSIIYPTILEITADNILANIEI 368          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_PSEPF (Betaine aldehyde dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1) GN=betB PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.321e-30
Identity = 87/251 (34.66%), Postives = 124/251 (49.40%), Query Frame = 1
Query:    7 TKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPE-ESCDITPVVSESSANFIEGLVMDAKQKGA-TFCQEYR------REGNLIWPLLLDNVRPDMRI 723
            T +  T   PLGVV  I  +NYP+ +A+ K APAL AGN+++ KP    ++  L +   +  AG P G+ + +TG G E+G +LT HP +  ISFTGG DTG  +   A    L+   MELGGK   I+ +DADLD  A   +   F  SGQ CT    V V   +  +           + VG PE E+ +  P+VS      + G +   K++GA   C   R       +G  + P +  +   DM I
Sbjct:  133 TSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTTLKLAEIYTEAGVPNGVFNVLTGSGREVGTWLTEHPRIEKISFTGGTDTGKKVMASASASSLKDVTMELGGKSPLIICDDADLDRAADTAMMANFYSSGQVCTNGTRVFVPSHLKAAFEAKIVERVARIRVGNPEDENTNFGPLVSFPHMESVLGYIAKGKEEGARVLCGGERLTDGEFAKGAFVAPTVFTDCTDDMTI 383          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_PSEFS (Betaine aldehyde dehydrogenase OS=Pseudomonas fluorescens (strain SBW25) GN=betB PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.321e-30
Identity = 80/217 (36.87%), Postives = 115/217 (53.00%), Query Frame = 1
Query:    7 TKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVG-PPEESCDITPVVSESSANFIEGLVMDAKQKGA 642
            T +  T   PLGVV  I  +NYP+ +A+ K APAL AGN+++ KP    ++  L +   +  AG P G+ + +TG G E+G +LT HP +  +SFTGG DTG  +   A    L+   MELGGK   IV EDADLD  A   +   F  SGQ CT    V V + +  +           + VG P +E+ +  P+VS +    + G +   K++GA
Sbjct:  133 TSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTTLKLAEIYTEAGVPAGVFNVLTGSGREVGTWLTEHPRIEKVSFTGGTDTGKKVMASASSSSLKEVTMELGGKSPLIVFEDADLDRAADIAMMANFYSSGQVCTNGTRVFVPKHLQAAFEAKIVERVARIRVGDPQDENTNFGPLVSFAHMESVLGYIAKGKEQGA 349          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_PSEF5 (Betaine aldehyde dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=betB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.725e-30
Identity = 85/251 (33.86%), Postives = 124/251 (49.40%), Query Frame = 1
Query:    7 TKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPE-ESCDITPVVSESSANFIEGLVMDAKQKGA-TFCQEYR------REGNLIWPLLLDNVRPDMRI 723
            T +  T   PLGVV  I  +NYP+ +A+ K APAL AGN+++ KP    ++  L +   +  AG P G+ + +TG G E+G +LT HP +  +SFTGG DTG  +   A    L+   MELGGK   I+ +DADLD  A   +   F  SGQ CT    V V   +  +           + +G PE E+ +  P+VS      + G +   K++GA   C   R       +G  + P +  +   DM I
Sbjct:  133 TSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTTLKLAEIYTEAGLPDGVFNVLTGSGREVGTWLTEHPRIEKVSFTGGTDTGKKVMASASSSSLKDVTMELGGKSPLIIFDDADLDRAADTAMMANFYSSGQVCTNGTRVFVPSHLKAAFEAKIAERVARIRIGNPEDENTNFGPLVSFPHMESVLGYIAKGKEEGARVLCGGERLTDGEFAKGAFVAPTVFTDCTDDMTI 383          
The following BLAST results are available for this feature:
BLAST of CX296726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ROCA_BACCN4.540e-3133.201-pyrroline-5-carboxylate dehydrogenase OS=Bacillu... [more]
LADH_METVS4.540e-3133.62Lactaldehyde dehydrogenase OS=Methanococcus vannie... [more]
BADH_SPIOL4.540e-3135.98Betaine aldehyde dehydrogenase, chloroplastic OS=S... [more]
BADH_BETVU4.540e-3135.15Betaine aldehyde dehydrogenase, chloroplastic OS=B... [more]
BADH2_ARATH4.540e-3135.15Betaine aldehyde dehydrogenase 2, mitochondrial OS... [more]
ROCA_GEOSW5.930e-3133.741-pyrroline-5-carboxylate dehydrogenase OS=Geobaci... [more]
LADH_META31.011e-3032.65Lactaldehyde dehydrogenase OS=Methanococcus aeolic... [more]
BETB_PSEPF1.321e-3034.66Betaine aldehyde dehydrogenase OS=Pseudomonas fluo... [more]
BETB_PSEFS1.321e-3036.87Betaine aldehyde dehydrogenase OS=Pseudomonas fluo... [more]
BETB_PSEF51.725e-3033.86Betaine aldehyde dehydrogenase OS=Pseudomonas fluo... [more]

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Properties
Property NameValue
Genbank descriptionC05802B04SK FerrChloL1 Citrus clementina cDNA clone C05802B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296726 ID=CX296726; Name=CX296726; organism=Citrus clementina; type=EST; length=724bp
GAGAGGACTAAATATTGTCTCACTTCAAACATTCCACTTGGTGTGGTTTT
GGCCATTCCACCATTCAACTATCCAGTCAATCTTGCCGTTTCCAAAATTG
CTCCTGCACTGATTGCTGGAAATTCCCTTGTGCTTAAGCCTCCTACTCAG
GGTGCTGTTGCTGCGCTTCACATGGTGCATTGCTTTCACTTGGCTGGTTT
TCCTAAAGGTCTTATAAGCTGTGTCACCGGGAAAGGTTCTGAGATTGGTG
ATTTCCTTACTATGCATCCTGCAGTGAACTGTATAAGCTTCACTGGTGGA
GACACTGGAATTTCAATCTCTAAGAAGGCTGGAATGATCCCTCTTCAGAT
GGAGTTGGGAGGCAAAGATGCTTGTATCGTGCTTGAGGATGCTGACCTTG
ATTTGGTTGCCGCAAACATAATAAAAGGAGGATTTTCTTACAGTGGTCAA
AGATGCACTGCAGTTAAGGTTGTCTTGGTGATGGAATCTGTAGCAGATTC
CCTGGTCGAGAAGGTTAAGGCTAAAGTGGTGAAACTGACAGTTGGCCCTC
CTGAAGAAAGCTGTGATATCACTCCAGTTGTGTCGGAATCATCTGCAAAT
TTCATTGAAGGGCTGGTTATGGATGCCAAACAGAAAGGAGCAACATTCTG
TCAAGAGTACAGGAGAGAAGGCAACCTCATCTGGCCCTTGTTGCTTGACA
ATGTTAGGCCCGATATGAGGATCG
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