CX296726

Overview
NameCX296726
Unique NameCX296726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12872 contig Ccv1_Contig12872:500..1223. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ROCA_BACWK (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus weihenstephanensis (strain KBAB4) GN=rocA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.020e-30
Identity = 81/250 (32.40%), Postives = 134/250 (53.60%), Query Frame = 1
Query:   10 KYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMI-PLQM-------ELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPE-ESCDITPVVSESSANFIEGLVMDAKQKGATFC--QEYRREGNLIWPLLLDNVRPDMRI 723
            +Y   S IPLGV + I P+N+P  +       A+++GN+++LKP +   V A   +     AG P G+++ V G GSE+GD+L  HP    +SFTG  D GI I ++A  + P Q+       E+GGKD  +V ++ADL+L A +I+   F +SGQ+C+A    ++ E V D +          LTVG P+ +  ++ PV  +++ + +   V   K++G      +    +G  I P ++ +V  D R+
Sbjct:  163 EYNRFSYIPLGVGVIISPWNFPFAIMAGMTTAAVVSGNTVLLKPASTTPVVAAKFMEVLEEAGLPAGVVNFVPGNGSEVGDYLVDHPRTRFVSFTGSRDVGIRIYERAAKVNPGQIWLKRVIAEMGGKDTIVVDKEADLELAAKSIVASAFGFSGQKCSACSRAVIHEDVYDHVLNRAVELTKELTVGNPDAKDINMGPVNDQAAFDKVMSYVAIGKEEGKIVSGGEGDDSKGWFIQPTIVADVAEDARL 412          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ROCA_BACSU (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus subtilis GN=rocA PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.556e-30
Identity = 79/241 (32.78%), Postives = 123/241 (51.04%), Query Frame = 1
Query:   37 LGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIP--------LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEE-SCDITPVVSESSANFIEGLVMDAKQKGATFC--QEYRREGNLIWPLLLDNVRPDMRI 723
            LGV + I PFN+P+ +       A++ GN+++LKP     V A   V     AG P G+++ + G G+EIGDFL  HP    +SFTG    G  I ++A  +         +  E+GGKD  +V +DADLDL A++I+   F YSGQ+C+A    ++ + V D +          LTVG PE+    + PV+ E+S N +   +   K +G      +    +G  I P +  +V  + R+
Sbjct:  172 LGVGIVISPFNFPLAIMAGTAVAAIVTGNTILLKPADAAPVVAAKFVEVMEEAGLPNGVLNYIPGDGAEIGDFLVEHPKTRFVSFTGSRAVGCRIYERAAKVQPGQKWLKRVIAEMGGKDTVLVDKDADLDLAASSIVYSAFGYSGQKCSAGSRAVIHQDVYDEVVEKAVALTKTLTVGNPEDPDTYMGPVIHEASYNKVMKYIEIGKSEGKLLAGGEGDDSKGYFIQPTIFADVDENARL 412          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_BURCM (Betaine aldehyde dehydrogenase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=betB PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.562e-30
Identity = 89/249 (35.74%), Postives = 122/249 (49.00%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEESC-DITPVVSESSANFIEGLVMDAKQKGATFCQEYRR-------EGNLIWPLLLDNVRPDMRI 723
            +  T   PLGV   I  +NYP+ +A  K APAL AGN++V KP     + AL +   +  AG P G+ + V G GS +G  LT HP +  +SFTGG +TG  +   AG   L+   MELGGK   IV EDADLD  A   +   F  SGQ CT    V V  SV D+           + VG P ++  +  P+VS +  + + G +   K +GA       R        G  + P +  + R DM+I
Sbjct:  135 FVYTRREPLGVCAGIGAWNYPIQIACWKTAPALAAGNAMVFKPSEVTPLTALKLAEIYTEAGVPAGVFNVVQGDGS-VGALLTGHPDIAKVSFTGGVETGKKVMSLAGASSLKEVTMELGGKSPLIVFEDADLDRAADIAVTANFFSSGQVCTNGTRVFVHRSVKDAFTQRVLERVKRIRVGKPTDAATNFGPLVSAAQLDKVLGFIDSGKAEGAKLLAGGTRLTDGHFASGQYVAPTVFGDCRDDMKI 382          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_BURVG (Betaine aldehyde dehydrogenase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=betB PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.118e-29
Identity = 87/249 (34.94%), Postives = 123/249 (49.40%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEES-CDITPVVSESSANFIEGLVMDAKQKGATFCQEYRR-------EGNLIWPLLLDNVRPDMRI 723
            +  T   PLGV   I  +NYP+ +A  K APAL AGN++V KP     + AL +   +  AG P G+ + V G GS +G  LT HP +  +SFTGG +TG  +   AG   L+   MELGGK   IV +DADLD  A   +   F  SGQ CT    V V  S+ D+           + VG P ++  +  P+VS +  + + G +   K +GA       R       +G  + P +  + R DM+I
Sbjct:  135 FVYTRREPLGVCAGIGAWNYPIQIACWKTAPALAAGNAMVFKPSEVTPLTALKLAEIYTEAGVPAGVFNVVQGDGS-VGALLTGHPDIAKVSFTGGVETGKKVMSLAGASSLKEVTMELGGKSPLIVFDDADLDRAADIAVIANFFSSGQVCTNGTRVFVQRSIKDAFTAKVLERVKRIRVGKPTDADTNFGPLVSAAQLDKVLGFIASGKAEGAKLLAGGTRLTDGHFADGQYVAPTVFGDCRDDMKI 382          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_BURA4 (Betaine aldehyde dehydrogenase OS=Burkholderia ambifaria (strain MC40-6) GN=betB PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.118e-29
Identity = 89/249 (35.74%), Postives = 122/249 (49.00%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEES-CDITPVVSESSANFIEGLVMDAKQKGATFCQEYRR-------EGNLIWPLLLDNVRPDMRI 723
            +  T   PLGV   I  +NYP+ +A  K APAL AGN++V KP     + AL +   +  AG P G+ + V G GS +G  LT HP +  +SFTGG +TG  +   AG   L+   MELGGK   IV EDADLD  A   +   F  SGQ CT    V V  SV D+           + VG P ++  +  P+VS +  + + G +   K +GA       R        G  + P +  + R DM+I
Sbjct:  135 FVYTRREPLGVCAGIGAWNYPIQIACWKTAPALAAGNAMVFKPSEVTPLTALKLAEIYTEAGVPAGVFNVVQGDGS-VGALLTGHPDIAKVSFTGGVETGKKVMSLAGASSLKEVTMELGGKSPLIVFEDADLDRAADIAVTANFFSSGQVCTNGTRVFVHRSVKDAFTQRVLERVKRIRVGKPTDADTNFGPLVSAAQLDKVLGFIDSGKAEGAKLLAGGTRLTDGHFGSGQYVAPTVFGDCRDDMKI 382          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ROCA1_BACHD (1-pyrroline-5-carboxylate dehydrogenase 1 OS=Bacillus halodurans GN=rocA1 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.907e-29
Identity = 81/250 (32.40%), Postives = 132/250 (52.80%), Query Frame = 1
Query:    1 ERTKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMI-PLQ-------MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEESCD-ITPVVSESSANFIEGLVMDAKQKG--ATFCQEYRREGNLIWPLLLDNVRPD 714
            E+ +Y  T   P+GV + I P+N+ + + V      ++ GN++VLKP +   V A   V     AG PKG+I+ V G G+E+GD+L  HP  + I+FTG  D G+ + ++A ++ P Q       +E+GGKD  +V  DADLDL A +I+   F +SGQ+C+A    ++ + V D +          LTVG P    + + PV+ E +   I   +   K++G   T  +     G  I P ++ ++ P+
Sbjct:  163 EQNRYFYT---PMGVTVTISPWNFALAIMVGTAVAPIVTGNTVVLKPASTTPVVAAKFVEVLEDAGLPKGVINYVPGSGAEVGDYLVDHPKTSLITFTGSKDVGVRLYERAAVVRPGQNHLKRVIVEMGGKDTVVVDRDADLDLAAESILVSAFGFSGQKCSAGSRAVIHKDVYDEVLEKTVALAKNLTVGDPTNRDNYMGPVIDEKAFEKIMSYIEIGKKEGRLMTGGEGDSSTGFFIQPTIIADLDPE 409          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_PECCP (Betaine aldehyde dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=betB PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.907e-29
Identity = 83/251 (33.07%), Postives = 124/251 (49.40%), Query Frame = 1
Query:    7 TKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVG-PPEESCDITPVVSESSANFIEGLVMDAKQKGA-------TFCQEYRREGNLIWPLLLDNVRPDMRI 723
            T +  T   PLGVV  I  +NYP+ +A+ K APAL AGN+++ KP    ++ AL +   +  AG P G+ + +TG G  +G  LT HP +  +SFTGG  +G ++   A    L+   MELGGK   IV EDADLD  A   +   F  SGQ CT    V V +++              + +G P +E+ +  P+VS      +   +   K++GA           E   +G  + P +  + R DM+I
Sbjct:  133 TSFAYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTALKLAEVYTEAGLPAGVFNVLTGTGQSVGQALTTHPGIAKVSFTGGIASGKTVMANAAGSTLKDVTMELGGKSPLIVFEDADLDKAADIAMMANFFSSGQVCTNGTRVFVPQALQTQFEEKILARVQRIRIGNPTDEAVNFGPLVSFPHRESVLRYIESGKREGARVLVGGEPMTDEKYAQGAFVAPTVFTDCRDDMKI 383          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_BURP1 (Betaine aldehyde dehydrogenase OS=Burkholderia pseudomallei (strain 1710b) GN=betB PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.907e-29
Identity = 84/249 (33.73%), Postives = 124/249 (49.80%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEES-CDITPVVSESSANFIEGLVMDAKQK-------GATFCQEYRREGNLIWPLLLDNVRPDMRI 723
            +  T   PLGV   I  +NYP+ +A  K APAL AGN+++ KP     ++AL +   +  AG P G+ + V G GS +G  L+ HP +  +SFTGG +TG  +   AG   L+   MELGGK   IV +DADLD  A   +   F  +GQ CT    V V ++V D+           + VG P +S  +  P+ S +  + + G +   K +       GA    ++   G  + P +  + R DMRI
Sbjct:  135 FVYTRREPLGVCAGIGAWNYPIQIACWKSAPALAAGNAMIFKPSEVTPLSALKLAEIYTEAGVPAGVFNVVQGDGS-VGALLSAHPGIAKVSFTGGVETGKKVMSLAGASSLKEVTMELGGKSPLIVFDDADLDRAADIAVTANFFSAGQVCTNGTRVFVQQAVKDAFVERVLARVARIRVGKPSDSDTNFGPLASAAQLDKVLGYIDSGKAEGAKLLAGGARLVNDHFASGQYVAPTVFGDCRDDMRI 382          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_BURP0 (Betaine aldehyde dehydrogenase OS=Burkholderia pseudomallei (strain 1106a) GN=betB PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.907e-29
Identity = 84/249 (33.73%), Postives = 124/249 (49.80%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEES-CDITPVVSESSANFIEGLVMDAKQK-------GATFCQEYRREGNLIWPLLLDNVRPDMRI 723
            +  T   PLGV   I  +NYP+ +A  K APAL AGN+++ KP     ++AL +   +  AG P G+ + V G GS +G  L+ HP +  +SFTGG +TG  +   AG   L+   MELGGK   IV +DADLD  A   +   F  +GQ CT    V V ++V D+           + VG P +S  +  P+ S +  + + G +   K +       GA    ++   G  + P +  + R DMRI
Sbjct:  135 FVYTRREPLGVCAGIGAWNYPIQIACWKSAPALAAGNAMIFKPSEVTPLSALKLAEIYTEAGVPAGVFNVVQGDGS-VGALLSAHPGIAKVSFTGGVETGKKVMSLAGASSLKEVTMELGGKSPLIVFDDADLDRAADIAVTANFFSAGQVCTNGTRVFVQQAVKDAFVERVLARVARIRVGKPSDSDTNFGPLASAAQLDKVLGYIDSGKAEGAKLLAGGARLVNDHFASGQYVAPTVFGDCRDDMRI 382          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_BURM1 (Betaine aldehyde dehydrogenase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=betB PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.907e-29
Identity = 86/249 (34.54%), Postives = 124/249 (49.80%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEES-CDITPVVSESSANFIEGLVMDAKQKGA-------TFCQEYRREGNLIWPLLLDNVRPDMRI 723
            +  T   PLGV   I  +NYP+ +A  K APAL AGN++V KP     ++AL +   +  AG P G+ + V G GS +G  LT HP +  +SFTGG +TG  +   AG   L+   MELGGK   IV +DADLD  A   +   F  SGQ CT    V V  S+ D+           + VG P ++  +  P+VS +  + + G +   K +GA          + +   G  + P +  + R DM+I
Sbjct:  135 FVYTRREPLGVCAGIGAWNYPIQIACWKTAPALAAGNAMVFKPSEVTPLSALKLAEIYTEAGVPAGVFNVVQGDGS-VGALLTGHPDIAKVSFTGGVETGKKVMSLAGASSLKEVTMELGGKSPLIVFDDADLDRAADIAVTANFFSSGQVCTNGTRVFVHRSIKDAFTQKVLERVKRIRVGKPTDADTNFGPLVSAAQLDKVLGFIESGKAEGAKLLAGGTRLTEGHFANGQYVAPTVFGDCRDDMKI 382          
The following BLAST results are available for this feature:
BLAST of CX296726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ROCA_BACWK5.020e-3032.401-pyrroline-5-carboxylate dehydrogenase OS=Bacillu... [more]
ROCA_BACSU6.556e-3032.781-pyrroline-5-carboxylate dehydrogenase OS=Bacillu... [more]
BETB_BURCM8.562e-3035.74Betaine aldehyde dehydrogenase OS=Burkholderia amb... [more]
BETB_BURVG1.118e-2934.94Betaine aldehyde dehydrogenase OS=Burkholderia vie... [more]
BETB_BURA41.118e-2935.74Betaine aldehyde dehydrogenase OS=Burkholderia amb... [more]
ROCA1_BACHD1.907e-2932.401-pyrroline-5-carboxylate dehydrogenase 1 OS=Bacil... [more]
BETB_PECCP1.907e-2933.07Betaine aldehyde dehydrogenase OS=Pectobacterium c... [more]
BETB_BURP11.907e-2933.73Betaine aldehyde dehydrogenase OS=Burkholderia pse... [more]
BETB_BURP01.907e-2933.73Betaine aldehyde dehydrogenase OS=Burkholderia pse... [more]
BETB_BURM11.907e-2934.54Betaine aldehyde dehydrogenase OS=Burkholderia mul... [more]

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Properties
Property NameValue
Genbank descriptionC05802B04SK FerrChloL1 Citrus clementina cDNA clone C05802B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296726 ID=CX296726; Name=CX296726; organism=Citrus clementina; type=EST; length=724bp
GAGAGGACTAAATATTGTCTCACTTCAAACATTCCACTTGGTGTGGTTTT
GGCCATTCCACCATTCAACTATCCAGTCAATCTTGCCGTTTCCAAAATTG
CTCCTGCACTGATTGCTGGAAATTCCCTTGTGCTTAAGCCTCCTACTCAG
GGTGCTGTTGCTGCGCTTCACATGGTGCATTGCTTTCACTTGGCTGGTTT
TCCTAAAGGTCTTATAAGCTGTGTCACCGGGAAAGGTTCTGAGATTGGTG
ATTTCCTTACTATGCATCCTGCAGTGAACTGTATAAGCTTCACTGGTGGA
GACACTGGAATTTCAATCTCTAAGAAGGCTGGAATGATCCCTCTTCAGAT
GGAGTTGGGAGGCAAAGATGCTTGTATCGTGCTTGAGGATGCTGACCTTG
ATTTGGTTGCCGCAAACATAATAAAAGGAGGATTTTCTTACAGTGGTCAA
AGATGCACTGCAGTTAAGGTTGTCTTGGTGATGGAATCTGTAGCAGATTC
CCTGGTCGAGAAGGTTAAGGCTAAAGTGGTGAAACTGACAGTTGGCCCTC
CTGAAGAAAGCTGTGATATCACTCCAGTTGTGTCGGAATCATCTGCAAAT
TTCATTGAAGGGCTGGTTATGGATGCCAAACAGAAAGGAGCAACATTCTG
TCAAGAGTACAGGAGAGAAGGCAACCTCATCTGGCCCTTGTTGCTTGACA
ATGTTAGGCCCGATATGAGGATCG
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