CX296726

Overview
NameCX296726
Unique NameCX296726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12872 contig Ccv1_Contig12872:500..1223. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ROCA_BACAC (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rocA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.491e-29
Identity = 82/250 (32.80%), Postives = 131/250 (52.40%), Query Frame = 1
Query:   10 KYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMI-PLQM-------ELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEE-SCDITPVVSESSANFIEGLVMDAKQKGATFC--QEYRREGNLIWPLLLDNVRPDMRI 723
            +Y   S IPLGV + I P+N+P  +       AL++GN+++LKP +   V A   +     AG P G+++ V G GSE+GD+L  HP    ISFTG  D GI I ++A  + P Q+       E+GGKD  +V ++ADL+L A +I+   F +SGQ+C+A    ++ E V D +          LTV  P     ++ PV  +++ + +   V   K++G      +    +G  I P ++ +V  D R+
Sbjct:  163 EYNRFSYIPLGVGVIISPWNFPFAIMAGMTTAALVSGNTVLLKPASTTPVVAAKFMEVLEEAGLPAGVVNFVPGNGSEVGDYLVDHPRTRFISFTGSRDVGIRIYERAAKVNPGQIWLKRVIAEMGGKDTIVVDKEADLELAAKSIVASAFGFSGQKCSACSRAVIHEDVYDHVLNRAVELTKELTVANPAVLGTNMGPVNDQAAFDKVMSYVAIGKEEGRILAGGEGDDSKGWFIQPTIVADVAEDARL 412          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ROCA_BACAA (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus anthracis (strain A0248) GN=rocA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.491e-29
Identity = 82/250 (32.80%), Postives = 131/250 (52.40%), Query Frame = 1
Query:   10 KYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMI-PLQM-------ELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEE-SCDITPVVSESSANFIEGLVMDAKQKGATFC--QEYRREGNLIWPLLLDNVRPDMRI 723
            +Y   S IPLGV + I P+N+P  +       AL++GN+++LKP +   V A   +     AG P G+++ V G GSE+GD+L  HP    ISFTG  D GI I ++A  + P Q+       E+GGKD  +V ++ADL+L A +I+   F +SGQ+C+A    ++ E V D +          LTV  P     ++ PV  +++ + +   V   K++G      +    +G  I P ++ +V  D R+
Sbjct:  163 EYNRFSYIPLGVGVIISPWNFPFAIMAGMTTAALVSGNTVLLKPASTTPVVAAKFMEVLEEAGLPAGVVNFVPGNGSEVGDYLVDHPRTRFISFTGSRDVGIRIYERAAKVNPGQIWLKRVIAEMGGKDTIVVDKEADLELAAKSIVASAFGFSGQKCSACSRAVIHEDVYDHVLNRAVELTKELTVANPAVLGTNMGPVNDQAAFDKVMSYVAIGKEEGRILAGGEGDDSKGWFIQPTIVADVAEDARL 412          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_PSEU2 (Betaine aldehyde dehydrogenase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=betB PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.491e-29
Identity = 77/217 (35.48%), Postives = 112/217 (51.61%), Query Frame = 1
Query:    7 TKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPE-ESCDITPVVSESSANFIEGLVMDAKQKGA 642
            + +  T   PLGVV  I  +NYP+ +A+ K APAL AGN+++ KP    ++  L +   +  AG P G+ + +TG G E+G ++T HP +  +SFTGG DTG  +   A    L+   MELGGK   IV +DADLD  A   +   F  SGQ CT    V V  ++              +  G PE E+ +  P+VS      + G +   K++GA
Sbjct:  133 SSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTTLKLAEIYTEAGVPNGVFNVLTGSGREVGTWITEHPRIEKVSFTGGTDTGKKVMASASSSSLKEVTMELGGKSPLIVFDDADLDRAADIAMMANFYSSGQVCTNGTRVFVPNALKAEFEAKILERVKRIRAGNPEDENINFGPLVSFEHMESVLGYIAKGKEQGA 349          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_PSE14 (Betaine aldehyde dehydrogenase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=betB PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.491e-29
Identity = 77/217 (35.48%), Postives = 112/217 (51.61%), Query Frame = 1
Query:    7 TKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPE-ESCDITPVVSESSANFIEGLVMDAKQKGA 642
            + +  T   PLGVV  I  +NYP+ +A+ K APAL AGN+++ KP    ++  L +   +  AG P G+ + +TG G E+G ++T HP +  +SFTGG DTG  +   A    L+   MELGGK   IV +DADLD  A   +   F  SGQ CT    V V  ++              +  G PE E+ +  P+VS      + G +   K++GA
Sbjct:  133 SSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTTLKLAEIYTEAGVPNGVFNVLTGSGREVGTWITEHPRIEKVSFTGGTDTGKKVMASASSSSLKEVTMELGGKSPLIVFDDADLDRAADIAMMANFYSSGQVCTNGTRVFVPNALKAEFEAKILERVKRIRAGNPEDENINFGPLVSFEHMESVLGYIAKGKEQGA 349          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_BURS3 (Betaine aldehyde dehydrogenase OS=Burkholderia sp. (strain 383) GN=betB PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.491e-29
Identity = 87/249 (34.94%), Postives = 122/249 (49.00%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEES-CDITPVVSESSANFIEGLVMDAKQKGATFCQEYRR-------EGNLIWPLLLDNVRPDMRI 723
            +  T   PLGV   I  +NYP+ +A  K APAL AGN++V KP     + AL +   +  AG P G+ + V G GS +G  LT HP +  +SFTGG +TG  +   AG   L+   MELGGK   IV +DADLD  A   +   F  SGQ CT    V V  S+ D+           + VG P ++  +  P+VS +  + + G +   K +GA       R        G  + P +  + R DM+I
Sbjct:  135 FVYTRREPLGVCAGIGAWNYPIQIACWKTAPALAAGNAMVFKPSEVTPLTALKLAEIYTEAGVPAGVFNVVQGDGS-VGALLTGHPDIAKVSFTGGVETGKKVMSLAGASSLKEVTMELGGKSPLIVFDDADLDRAADIAVTANFFSSGQVCTNGTRVFVHRSIKDAFTQRVLERVKRIRVGKPTDADTNFGPLVSAAQLDKVLGFIESGKAEGAKLLAGGTRLTDGHFGSGQYVAPTVFGDCRDDMKI 382          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_BURCH (Betaine aldehyde dehydrogenase OS=Burkholderia cenocepacia (strain HI2424) GN=betB PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.491e-29
Identity = 87/249 (34.94%), Postives = 122/249 (49.00%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEES-CDITPVVSESSANFIEGLVMDAKQKGATFCQEYRR-------EGNLIWPLLLDNVRPDMRI 723
            +  T   PLGV   I  +NYP+ +A  K APAL AGN++V KP     + AL +   +  AG P G+ + V G GS +G  LT HP +  +SFTGG +TG  +   AG   L+   MELGGK   IV +DADLD  A   +   F  SGQ CT    V V  S+ D+           + VG P ++  +  P+VS +  + + G +   K +GA       R        G  + P +  + R DM+I
Sbjct:  135 FVYTRREPLGVCAGIGAWNYPIQIACWKTAPALAAGNAMVFKPSEVTPLTALKLAEIYTEAGVPAGVFNVVQGDGS-VGALLTGHPDIAKVSFTGGVETGKKVMSLAGASSLKEVTMELGGKSPLIVFDDADLDRAADIAVTANFFSSGQVCTNGTRVFVHRSIKDAFTQKVLERVKRIRVGKPTDADTNFGPLVSAAQLDKVLGFIESGKAEGAKLLAGGTRLTDGHFGSGQYVAPTVFGDCRDDMKI 382          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_BURCC (Betaine aldehyde dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3) GN=betB PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.491e-29
Identity = 87/249 (34.94%), Postives = 122/249 (49.00%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEES-CDITPVVSESSANFIEGLVMDAKQKGATFCQEYRR-------EGNLIWPLLLDNVRPDMRI 723
            +  T   PLGV   I  +NYP+ +A  K APAL AGN++V KP     + AL +   +  AG P G+ + V G GS +G  LT HP +  +SFTGG +TG  +   AG   L+   MELGGK   IV +DADLD  A   +   F  SGQ CT    V V  S+ D+           + VG P ++  +  P+VS +  + + G +   K +GA       R        G  + P +  + R DM+I
Sbjct:  135 FVYTRREPLGVCAGIGAWNYPIQIACWKTAPALAAGNAMVFKPSEVTPLTALKLAEIYTEAGVPAGVFNVVQGDGS-VGALLTGHPDIAKVSFTGGVETGKKVMSLAGASSLKEVTMELGGKSPLIVFDDADLDRAADIAVTANFFSSGQVCTNGTRVFVHRSIKDAFTQKVLERVKRIRVGKPTDADTNFGPLVSAAQLDKVLGFIESGKAEGAKLLAGGTRLTDGHFGSGQYVAPTVFGDCRDDMKI 382          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_BURCA (Betaine aldehyde dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054) GN=betB PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.491e-29
Identity = 87/249 (34.94%), Postives = 122/249 (49.00%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEES-CDITPVVSESSANFIEGLVMDAKQKGATFCQEYRR-------EGNLIWPLLLDNVRPDMRI 723
            +  T   PLGV   I  +NYP+ +A  K APAL AGN++V KP     + AL +   +  AG P G+ + V G GS +G  LT HP +  +SFTGG +TG  +   AG   L+   MELGGK   IV +DADLD  A   +   F  SGQ CT    V V  S+ D+           + VG P ++  +  P+VS +  + + G +   K +GA       R        G  + P +  + R DM+I
Sbjct:  135 FVYTRREPLGVCAGIGAWNYPIQIACWKTAPALAAGNAMVFKPSEVTPLTALKLAEIYTEAGVPAGVFNVVQGDGS-VGALLTGHPDIAKVSFTGGVETGKKVMSLAGASSLKEVTMELGGKSPLIVFDDADLDRAADIAVTANFFSSGQVCTNGTRVFVHRSIKDAFTQKVLERVKRIRVGKPTDADTNFGPLVSAAQLDKVLGFIESGKAEGAKLLAGGTRLTDGHFGSGQYVAPTVFGDCRDDMKI 382          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ROCA_BACCR (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rocA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.254e-29
Identity = 81/250 (32.40%), Postives = 131/250 (52.40%), Query Frame = 1
Query:   10 KYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMI-PLQM-------ELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEE-SCDITPVVSESSANFIEGLVMDAKQKGATFC--QEYRREGNLIWPLLLDNVRPDMRI 723
            +Y   S IPLGV + I P+N+P  +       AL++GN+++LKP +   V A   +     AG P G+++ V G GSE+GD+L  HP    +SFTG  D GI I ++A  + P Q+       E+GGKD  +V ++ADL+L A +I+   F +SGQ+C+A    ++ E V D +          LTV  P     ++ PV  +++ + +   V   K++G      +    +G  I P ++ +V  D R+
Sbjct:  163 EYNRFSYIPLGVGVIISPWNFPFAIMAGMTTAALVSGNTVLLKPASTTPVVAAKFMEVLEEAGLPAGVVNFVPGNGSEVGDYLVDHPRTRFVSFTGSRDVGIRIYERAAKVNPGQIWLKRVIAEMGGKDTIVVDKEADLELAAKSIVASAFGFSGQKCSACSRAVIHEDVYDHVLNRAVELTKELTVANPAVLGTNMGPVNDQAAFDKVMSYVAIGKEEGRILAGGEGDDSKGWFIQPTIVADVAEDARL 412          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ROCA_BACC4 (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus cereus (strain B4264) GN=rocA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.254e-29
Identity = 81/250 (32.40%), Postives = 131/250 (52.40%), Query Frame = 1
Query:   10 KYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMI-PLQM-------ELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEE-SCDITPVVSESSANFIEGLVMDAKQKGATFC--QEYRREGNLIWPLLLDNVRPDMRI 723
            +Y   S IPLGV + I P+N+P  +       AL++GN+++LKP +   V A   +     AG P G+++ V G GSE+GD+L  HP    +SFTG  D GI I ++A  + P Q+       E+GGKD  +V ++ADL+L A +I+   F +SGQ+C+A    ++ E V D +          LTV  P     ++ PV  +++ + +   V   K++G      +    +G  I P ++ +V  D R+
Sbjct:  163 EYNRFSYIPLGVGVIISPWNFPFAIMAGMTTAALVSGNTVLLKPASTTPVVAAKFMEVLEEAGLPAGVVNFVPGNGSEVGDYLVDHPRTRFVSFTGSRDVGIRIYERAAKVNPGQIWLKRVIAEMGGKDTIVVDKEADLELAAKSIVASAFGFSGQKCSACSRAVIHEDVYDHVLNRAVELTKELTVANPAVLGTNMGPVNDQAAFDKVMSYVAIGKEEGRILAGGEGDDSKGWFIQPTIVADVAEDARL 412          
The following BLAST results are available for this feature:
BLAST of CX296726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ROCA_BACAC2.491e-2932.801-pyrroline-5-carboxylate dehydrogenase OS=Bacillu... [more]
ROCA_BACAA2.491e-2932.801-pyrroline-5-carboxylate dehydrogenase OS=Bacillu... [more]
BETB_PSEU22.491e-2935.48Betaine aldehyde dehydrogenase OS=Pseudomonas syri... [more]
BETB_PSE142.491e-2935.48Betaine aldehyde dehydrogenase OS=Pseudomonas syri... [more]
BETB_BURS32.491e-2934.94Betaine aldehyde dehydrogenase OS=Burkholderia sp.... [more]
BETB_BURCH2.491e-2934.94Betaine aldehyde dehydrogenase OS=Burkholderia cen... [more]
BETB_BURCC2.491e-2934.94Betaine aldehyde dehydrogenase OS=Burkholderia cen... [more]
BETB_BURCA2.491e-2934.94Betaine aldehyde dehydrogenase OS=Burkholderia cen... [more]
ROCA_BACCR3.254e-2932.401-pyrroline-5-carboxylate dehydrogenase OS=Bacillu... [more]
ROCA_BACC43.254e-2932.401-pyrroline-5-carboxylate dehydrogenase OS=Bacillu... [more]

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Properties
Property NameValue
Genbank descriptionC05802B04SK FerrChloL1 Citrus clementina cDNA clone C05802B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296726 ID=CX296726; Name=CX296726; organism=Citrus clementina; type=EST; length=724bp
GAGAGGACTAAATATTGTCTCACTTCAAACATTCCACTTGGTGTGGTTTT
GGCCATTCCACCATTCAACTATCCAGTCAATCTTGCCGTTTCCAAAATTG
CTCCTGCACTGATTGCTGGAAATTCCCTTGTGCTTAAGCCTCCTACTCAG
GGTGCTGTTGCTGCGCTTCACATGGTGCATTGCTTTCACTTGGCTGGTTT
TCCTAAAGGTCTTATAAGCTGTGTCACCGGGAAAGGTTCTGAGATTGGTG
ATTTCCTTACTATGCATCCTGCAGTGAACTGTATAAGCTTCACTGGTGGA
GACACTGGAATTTCAATCTCTAAGAAGGCTGGAATGATCCCTCTTCAGAT
GGAGTTGGGAGGCAAAGATGCTTGTATCGTGCTTGAGGATGCTGACCTTG
ATTTGGTTGCCGCAAACATAATAAAAGGAGGATTTTCTTACAGTGGTCAA
AGATGCACTGCAGTTAAGGTTGTCTTGGTGATGGAATCTGTAGCAGATTC
CCTGGTCGAGAAGGTTAAGGCTAAAGTGGTGAAACTGACAGTTGGCCCTC
CTGAAGAAAGCTGTGATATCACTCCAGTTGTGTCGGAATCATCTGCAAAT
TTCATTGAAGGGCTGGTTATGGATGCCAAACAGAAAGGAGCAACATTCTG
TCAAGAGTACAGGAGAGAAGGCAACCTCATCTGGCCCTTGTTGCTTGACA
ATGTTAGGCCCGATATGAGGATCG
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