CX296726

Overview
NameCX296726
Unique NameCX296726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12872 contig Ccv1_Contig12872:500..1223. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_BURMS (Betaine aldehyde dehydrogenase OS=Burkholderia mallei (strain SAVP1) GN=betB PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.615e-28
Identity = 82/249 (32.93%), Postives = 122/249 (49.00%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEE-SCDITPVVSESSANFIEGLVMDAKQK-------GATFCQEYRREGNLIWPLLLDNVRPDMRI 723
            +  T   PLGV   I  +NYP+ +A  K APAL AGN+++ KP     ++AL +   +  AG P G+ + V G GS +G  L+ HP +  +SFTGG +TG  +   AG   L+   MELGGK   IV +DADLD  A   +   F  +GQ CT    V V ++V D+           +  G P +   +  P+ S +  + + G +   K +       GA    ++   G  + P +  + R DMRI
Sbjct:  135 FVYTRREPLGVCAGIGAWNYPIQIACWKSAPALAAGNAMIFKPSEVTPLSALKLAEIYTEAGVPAGVFNVVQGDGS-VGALLSAHPGIAKVSFTGGVETGKKVMSLAGASSLKEVTMELGGKSPLIVFDDADLDRAADIAVTANFFSAGQVCTNGTRVFVQQAVKDAFVERVLARVARIRAGKPSDPDTNFGPLASAAQLDKVLGYIDSGKAEGAKLLAGGARLVNDHFASGQYVAPTVFGDCRDDMRI 382          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_BURMA (Betaine aldehyde dehydrogenase OS=Burkholderia mallei GN=betB PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.615e-28
Identity = 82/249 (32.93%), Postives = 122/249 (49.00%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEE-SCDITPVVSESSANFIEGLVMDAKQK-------GATFCQEYRREGNLIWPLLLDNVRPDMRI 723
            +  T   PLGV   I  +NYP+ +A  K APAL AGN+++ KP     ++AL +   +  AG P G+ + V G GS +G  L+ HP +  +SFTGG +TG  +   AG   L+   MELGGK   IV +DADLD  A   +   F  +GQ CT    V V ++V D+           +  G P +   +  P+ S +  + + G +   K +       GA    ++   G  + P +  + R DMRI
Sbjct:  135 FVYTRREPLGVCAGIGAWNYPIQIACWKSAPALAAGNAMIFKPSEVTPLSALKLAEIYTEAGVPAGVFNVVQGDGS-VGALLSAHPGIAKVSFTGGVETGKKVMSLAGASSLKEVTMELGGKSPLIVFDDADLDRAADIAVTANFFSAGQVCTNGTRVFVQQAVKDAFVERVLARVARIRAGKPSDPDTNFGPLASAAQLDKVLGYIDSGKAEGAKLLAGGARLVNDHFASGQYVAPTVFGDCRDDMRI 382          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_BURM9 (Betaine aldehyde dehydrogenase OS=Burkholderia mallei (strain NCTC 10229) GN=betB PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.615e-28
Identity = 82/249 (32.93%), Postives = 122/249 (49.00%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEE-SCDITPVVSESSANFIEGLVMDAKQK-------GATFCQEYRREGNLIWPLLLDNVRPDMRI 723
            +  T   PLGV   I  +NYP+ +A  K APAL AGN+++ KP     ++AL +   +  AG P G+ + V G GS +G  L+ HP +  +SFTGG +TG  +   AG   L+   MELGGK   IV +DADLD  A   +   F  +GQ CT    V V ++V D+           +  G P +   +  P+ S +  + + G +   K +       GA    ++   G  + P +  + R DMRI
Sbjct:  135 FVYTRREPLGVCAGIGAWNYPIQIACWKSAPALAAGNAMIFKPSEVTPLSALKLAEIYTEAGVPAGVFNVVQGDGS-VGALLSAHPGIAKVSFTGGVETGKKVMSLAGASSLKEVTMELGGKSPLIVFDDADLDRAADIAVTANFFSAGQVCTNGTRVFVQQAVKDAFVERVLARVARIRAGKPSDPDTNFGPLASAAQLDKVLGYIDSGKAEGAKLLAGGARLVNDHFASGQYVAPTVFGDCRDDMRI 382          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_BURM7 (Betaine aldehyde dehydrogenase OS=Burkholderia mallei (strain NCTC 10247) GN=betB PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.615e-28
Identity = 82/249 (32.93%), Postives = 122/249 (49.00%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEE-SCDITPVVSESSANFIEGLVMDAKQK-------GATFCQEYRREGNLIWPLLLDNVRPDMRI 723
            +  T   PLGV   I  +NYP+ +A  K APAL AGN+++ KP     ++AL +   +  AG P G+ + V G GS +G  L+ HP +  +SFTGG +TG  +   AG   L+   MELGGK   IV +DADLD  A   +   F  +GQ CT    V V ++V D+           +  G P +   +  P+ S +  + + G +   K +       GA    ++   G  + P +  + R DMRI
Sbjct:  135 FVYTRREPLGVCAGIGAWNYPIQIACWKSAPALAAGNAMIFKPSEVTPLSALKLAEIYTEAGVPAGVFNVVQGDGS-VGALLSAHPGIAKVSFTGGVETGKKVMSLAGASSLKEVTMELGGKSPLIVFDDADLDRAADIAVTANFFSAGQVCTNGTRVFVQQAVKDAFVERVLARVARIRAGKPSDPDTNFGPLASAAQLDKVLGYIDSGKAEGAKLLAGGARLVNDHFASGQYVAPTVFGDCRDDMRI 382          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BADH_ATRHO (Betaine aldehyde dehydrogenase, chloroplastic OS=Atriplex hortensis PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.615e-28
Identity = 79/239 (33.05%), Postives = 123/239 (51.46%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAGMI--PLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATFC-----QEYRREGNLIWPLLLDNVRPDMRI 723
            P+GVV  I P+NYP+ +   KIAPAL AG + VLKP    +V  L      +  G P G+++ +TG G + G  +  HP ++ ++FTG   TG  I   A  +  P+ +ELGGK   I+ ED D++      + G F  +GQ C+A   +LV ES+A             + +  P EE C + PV+S+   + I   +  AK +GAT        E+ ++G  I P ++ ++   M+I
Sbjct:  153 PIGVVGLISPWNYPLLMDTWKIAPALAAGCTTVLKPSELASVTCLEFGEVCNEVGLPPGVLNILTGLGPDAGAPIVSHPDIDKVAFTGSSATGSKIMASAAQLVKPVTLELGGKSPVIMFEDIDIETAVEWTLFGVFWTNGQICSATSRLLVHESIAAEFVDRMVKWTKNIKISDPFEEGCRLGPVISKGQYDKIMKFISTAKSEGATILCGGSRPEHLKKGYYIEPTIITDITTSMQI 391          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ALDH4_YEAST (Potassium-activated aldehyde dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae GN=ALD4 PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.615e-28
Identity = 90/247 (36.44%), Postives = 126/247 (51.01%), Query Frame = 1
Query:    4 RTKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISI--SKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRR---EGNLIWPLLLDNVRPDMRI 723
            RT +  T   PLGV   I P+N+P+ +   KIAPAL+ GN++VLK      ++AL++      AG P G+I+ V+G G  +G+ +T HP +  ++FTG   TG  I  S  AG+  + +ELGGK   IV  DA+L     NII G +  SG+ C A   V V ES+ D            + VG P +ES       S+   N I   V   K +GAT      R   +G  I P +  +V+ DMRI
Sbjct:  171 RTHFSYTKRQPLGVCGQIIPWNFPLLMWAWKIAPALVTGNTVVLKTAESTPLSALYVSKYIPQAGIPPGVINIVSGFGKIVGEAITNHPKIKKVAFTGSTATGRHIYQSAAAGLKKVTLELGGKSPNIVFADAELKKAVQNIILGIYYNSGEVCCAGSRVYVEESIYDKFIEEFKAASESIKVGDPFDESTFQGAQTSQMQLNKILKYVDIGKNEGATLITGGERLGSKGYFIKPTVFGDVKEDMRI 417          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: AL1A3_RAT (Aldehyde dehydrogenase family 1 member A3 OS=Rattus norvegicus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.615e-28
Identity = 84/244 (34.43%), Postives = 123/244 (50.41%), Query Frame = 1
Query:   16 CLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATF-CQEYRRE--GNLIWPLLLDNVRPDMRI 723
            C T + P+GV  AI P+N+P+ +   K+APAL  GN++VLKP  Q  + AL++       GFP G+++ V G G  +G  ++ HP +N I+FTG  + G  + + A    L+   +ELGG++ CIV  DADLDL      +G F   GQ CTA   V V E V                VG P +   +  P + +   + I  L+   K++GA   C     E  G  I P +  +V  +MRI
Sbjct:  164 CFTRHEPIGVCGAITPWNFPLLMLAWKLAPALCCGNTVVLKPAEQTPLTALYLASLIKEVGFPPGVVNIVPGFGPTVGAAISSHPQINKIAFTGSTEVGKLVKEAASRSNLKRVTLELGGRNPCIVCADADLDLAVECAHQGVFFNQGQCCTAASRVFVEEQVYGEFVRRSVEFAKKRPVGDPFDAKTEQGPQIDQKQFDKILELIESGKKEGAKLECGGSAMEDRGLFIKPTVFSDVTDNMRI 407          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_PSEPK (Betaine aldehyde dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=betB PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.109e-28
Identity = 79/251 (31.47%), Postives = 123/251 (49.00%), Query Frame = 1
Query:    7 TKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGDTG----ISISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPE-ESCDITPVVSESSANFIEGLVMDAKQKGA-TFCQEYR------REGNLIWPLLLDNVRPDMRI 723
            + +  T   PLGV + I  +NYP+ +A+ K APAL AGN+++ KP    ++  L +   +  AG P G+ + +TG G E+G +LT HP +  +SFTGG T     ++ +  + +  + MELGGK   I+  DADLD  A   +   F  SGQ CT    V +   +  +           + VG PE E+ +  P+VS      + G +   K++GA   C   R       +G  + P +  +   DM I
Sbjct:  133 SSFVYTRREPLGVTVGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTTLKLAEIYTEAGLPNGVFNVLTGSGREVGTWLTEHPRIEKVSFTGGTTTGKKVMASASSSSLKEVTMELGGKSPLIICADADLDKAADIAMMANFYSSGQVCTNGTRVFIPAEMKAAFEAKIAERVARIRVGNPEDENTNFGPLVSFQHMESVLGYIAKGKEEGARVLCGGERLTAGDFAKGAFVAPTVFTDCTDDMTI 383          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_PSEP1 (Betaine aldehyde dehydrogenase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=betB PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.109e-28
Identity = 79/251 (31.47%), Postives = 123/251 (49.00%), Query Frame = 1
Query:    7 TKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGDTG----ISISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPE-ESCDITPVVSESSANFIEGLVMDAKQKGA-TFCQEYR------REGNLIWPLLLDNVRPDMRI 723
            + +  T   PLGV + I  +NYP+ +A+ K APAL AGN+++ KP    ++  L +   +  AG P G+ + +TG G E+G +LT HP +  +SFTGG T     ++ +  + +  + MELGGK   I+  DADLD  A   +   F  SGQ CT    V +   +  +           + VG PE E+ +  P+VS      + G +   K++GA   C   R       +G  + P +  +   DM I
Sbjct:  133 SSFVYTRREPLGVTVGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTTLKLAEIYTEAGLPNGVFNVLTGSGREVGTWLTEHPRIEKVSFTGGTTTGKKVMASASSSSLKEVTMELGGKSPLIICADADLDKAADIAMMANFYSSGQVCTNGTRVFIPAEMKAAFEAKIAERVARIRVGNPEDENTNFGPLVSFQHMESVLGYIAKGKEEGARVLCGGERLTAGDFAKGAFVAPTVFTDCTDDMTI 383          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BADH_ORYSJ (Betaine aldehyde dehydrogenase OS=Oryza sativa subsp. japonica GN=Os04g0464200 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.109e-28
Identity = 82/239 (34.31%), Postives = 124/239 (51.88%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTG--ISISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATFC-----QEYRREGNLIWPLLLDNVRPDMRI 723
            P+GVV  I P+NYP+ +A  K+APAL AG + VLKP    ++  L +       G P G+++ +TG G+E G  L  HP V+ I+FTG  +TG  I I+    + P+ +ELGGK   IV +D D+D      + G F+ +GQ C+A   +L+ E +A             + +  P EE C +  VVSE     I   +  A+ +GAT        ++ + G  I P ++ NV   M+I
Sbjct:  153 PIGVVGLITPWNYPLLMATWKVAPALAAGCTAVLKPSELASLTCLELGGICAEIGLPPGVLNIITGLGTEAGAPLASHPHVDKIAFTGSTETGKRIMITASQMVKPVSLELGGKSPLIVFDDVDIDKAVEWAMFGCFANAGQVCSATSRLLLHEKIAKRFLDRLVAWAKSIKISDPLEEGCRLGSVVSEGQYQKIMKFISTARCEGATILYGGARPQHLKRGFFIEPTIITNVSTSMQI 391          
The following BLAST results are available for this feature:
BLAST of CX296726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
BETB_BURMS1.615e-2832.93Betaine aldehyde dehydrogenase OS=Burkholderia mal... [more]
BETB_BURMA1.615e-2832.93Betaine aldehyde dehydrogenase OS=Burkholderia mal... [more]
BETB_BURM91.615e-2832.93Betaine aldehyde dehydrogenase OS=Burkholderia mal... [more]
BETB_BURM71.615e-2832.93Betaine aldehyde dehydrogenase OS=Burkholderia mal... [more]
BADH_ATRHO1.615e-2833.05Betaine aldehyde dehydrogenase, chloroplastic OS=A... [more]
ALDH4_YEAST1.615e-2836.44Potassium-activated aldehyde dehydrogenase, mitoch... [more]
AL1A3_RAT1.615e-2834.43Aldehyde dehydrogenase family 1 member A3 OS=Rattu... [more]
BETB_PSEPK2.109e-2831.47Betaine aldehyde dehydrogenase OS=Pseudomonas puti... [more]
BETB_PSEP12.109e-2831.47Betaine aldehyde dehydrogenase OS=Pseudomonas puti... [more]
BADH_ORYSJ2.109e-2834.31Betaine aldehyde dehydrogenase OS=Oryza sativa sub... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05802B04SK FerrChloL1 Citrus clementina cDNA clone C05802B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296726 ID=CX296726; Name=CX296726; organism=Citrus clementina; type=EST; length=724bp
GAGAGGACTAAATATTGTCTCACTTCAAACATTCCACTTGGTGTGGTTTT
GGCCATTCCACCATTCAACTATCCAGTCAATCTTGCCGTTTCCAAAATTG
CTCCTGCACTGATTGCTGGAAATTCCCTTGTGCTTAAGCCTCCTACTCAG
GGTGCTGTTGCTGCGCTTCACATGGTGCATTGCTTTCACTTGGCTGGTTT
TCCTAAAGGTCTTATAAGCTGTGTCACCGGGAAAGGTTCTGAGATTGGTG
ATTTCCTTACTATGCATCCTGCAGTGAACTGTATAAGCTTCACTGGTGGA
GACACTGGAATTTCAATCTCTAAGAAGGCTGGAATGATCCCTCTTCAGAT
GGAGTTGGGAGGCAAAGATGCTTGTATCGTGCTTGAGGATGCTGACCTTG
ATTTGGTTGCCGCAAACATAATAAAAGGAGGATTTTCTTACAGTGGTCAA
AGATGCACTGCAGTTAAGGTTGTCTTGGTGATGGAATCTGTAGCAGATTC
CCTGGTCGAGAAGGTTAAGGCTAAAGTGGTGAAACTGACAGTTGGCCCTC
CTGAAGAAAGCTGTGATATCACTCCAGTTGTGTCGGAATCATCTGCAAAT
TTCATTGAAGGGCTGGTTATGGATGCCAAACAGAAAGGAGCAACATTCTG
TCAAGAGTACAGGAGAGAAGGCAACCTCATCTGGCCCTTGTTGCTTGACA
ATGTTAGGCCCGATATGAGGATCG
back to top