CX296726

Overview
NameCX296726
Unique NameCX296726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12872 contig Ccv1_Contig12872:500..1223. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ROCA_OCEIH (1-pyrroline-5-carboxylate dehydrogenase OS=Oceanobacillus iheyensis GN=rocA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.754e-28
Identity = 80/242 (33.06%), Postives = 124/242 (51.24%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIP--------LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVG-PPEESCDITPVVSESSANFIEGLVMDAKQKGATFC--QEYRREGNLIWPLLLDNVRPDMRI 723
            PLG  + IPP+N+   +        ++AGN ++LKP     V A  +V     AG PKG+++ V G  +EIGD+L  H   + I+FTG   TG+ I ++A  I         +  E+GGKD  IV E ADLDL A +I+   F +SGQ+C+A    ++ ESV D +          LTVG P E++  +  VV++   + I+  +   KQ+G      +    +G  + P +  ++ P  RI
Sbjct:  171 PLGPGVVIPPWNFAFAIVCGTTVAPIVAGNPVLLKPSENTPVIAYKLVEVLEEAGLPKGVLNFVPGDPAEIGDYLVDHKDTHFINFTGSRATGVRIFERATKIQDGQTHLKRIVAEMGGKDTIIVDESADLDLAAESIVHSAFGFSGQKCSACSRAVIHESVYDEVIEKSVELAKTLTVGNPTEDNVYMASVVNQKQFDKIKDYIEVGKQEGELVFGGETDDNKGFFVHPTIFKDLDPKARI 412          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ROCA2_BACHD (1-pyrroline-5-carboxylate dehydrogenase 2 OS=Bacillus halodurans GN=rocA2 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.754e-28
Identity = 79/253 (31.23%), Postives = 131/253 (51.78%), Query Frame = 1
Query:    1 ERTKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMI-PLQ-------MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVG-PPEESCDITPVVSESSANFIEGLVMDAKQKGATFC--QEYRREGNLIWPLLLDNVRPDMRI 723
            E  +Y  T   P+GV + I P+N+ + +        ++ GN+++LKP +   V A   V     AG PKG+++ V G G++IGD+L  HP  + I+FTG  D G+ + ++A ++ P Q       +E+GGKD  +V +DADLDL A +I+   F +SGQ+C+A    ++ + V D +          L+VG P      + PVV + + + I   +   K++G      +    +G  I P +  +V P  RI
Sbjct:  163 EHNRYFYT---PIGVCVTISPWNFALAIMAGTTVAPIVTGNTVLLKPASTTPVVAAKFVEVLEEAGLPKGVVNFVPGSGTDIGDYLIDHPKTSLITFTGSRDVGVRLYERAAVVHPGQQHLKRVIVEMGGKDTVVVDKDADLDLAAQSIVTSAFGFSGQKCSAGSRAVIHQDVYDVVLEKAVALTKQLSVGEPTAPDVYMGPVVDQGAFSKIMSYIEVGKEEGRLMVGGEGDDSKGFFIQPTIFADVDPHARI 412          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_YERP3 (Betaine aldehyde dehydrogenase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=betB PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.754e-28
Identity = 80/249 (32.13%), Postives = 124/249 (49.80%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVG-PPEESCDITPVVSESSANFIEGLVMDAKQKGAT-------FCQEYRREGNLIWPLLLDNVRPDMRI 723
            +  T   PLGVV  I  +NYP+ +A+ K APAL AGN+++ KP    ++ AL +   +  AG P G+ + +TG G ++G  LT HP +  +SFTGG  +G  +   A    L+   MELGGK   I+  DADLD  A   +   F  SGQ CT    V V +++  +           + +G P +E  +  P+VS    + +   +   K++GAT         ++    G  + P +  + R DM+I
Sbjct:  135 FVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTALKLAEIYTEAGLPAGVFNVLTGSGDQVGQMLTEHPGIAKVSFTGGIASGKKVMANAAGSTLKDVTMELGGKSPLIIFADADLDKAADIAMMANFYSSGQVCTNGTRVFVPQALQAAFEQKIVERVKRIHIGDPSDERTNFGPLVSFQHRDSVMRYIDSGKREGATLLIGGYSLTEDALAHGAYVAPTVFTHCRDDMQI 383          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_PSEA7 (Betaine aldehyde dehydrogenase OS=Pseudomonas aeruginosa (strain PA7) GN=betB PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.754e-28
Identity = 86/251 (34.26%), Postives = 118/251 (47.01%), Query Frame = 1
Query:    7 TKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVG-PPEESCDITPVVSESSANFIEGLVMDAK-QKGATFCQEYR------REGNLIWPLLLDNVRPDMRI 723
            T +  T   PLGVV  I  +NYPV +A+ K APAL AGN+++ KP     + AL +   +  AG P G+ + +TG G E+G +LT HP +  ISFTGG  TG  +   A    L+   MELGGK   I+  DADLD  A   +   F  SGQ CT    V +  S               + +G P +E+ +  P+VS      + G +   K QK    C   R        G  + P +  +   DM I
Sbjct:  133 TSFVYTRREPLGVVAGIGAWNYPVQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYTEAGVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMASASSSSLKEVTMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQARFEAKVLERVQRIRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTEGAFGNGAYVAPTVFTDCSDDMTI 383          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ALDH_ENCBU (Aldehyde dehydrogenase OS=Enchytraeus buchholzi GN=ALDH PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.754e-28
Identity = 87/245 (35.51%), Postives = 122/245 (49.80%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG----GDTGISISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATF-CQEYR--REGNLIWPLLLDNVRPDMRI 723
            +C T + P+GVV AI P+N+P++LA SKIAPA+ AG +LVLKP  Q  + AL++      AGFP G+I+ V G G   G  LT HP +N I+FTG    G   I  S K  +  + +ELGGK   I+  D+DLD       +   +  GQ C A     V E + +             TVG P +   +  P V E+    I  L+   K +GA   C   R   +G  + P +  +V   MR+
Sbjct:  149 FCYTRHEPVGVVGAITPWNFPLHLAASKIAPAIAAGCTLVLKPAEQTPLTALYLASLVKQAGFPAGVINIVPGLGHTAGAALTNHPDINKITFTGSTEVGQLIIQGSGKTNLKRVTLELGGKSPNIIFPDSDLDYAVEVSHQAIMANMGQVCCAGSRTFVHEDIYEEFVRRSVERAKKRTVGDPFDPKNENGPQVDETQLKKILELIESGKTEGAKLECGGKRLGDKGYFVEPTVFTDVTSSMRV 393          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ABDH_ERWCT (Gamma-aminobutyraldehyde dehydrogenase OS=Erwinia carotovora subsp. atroseptica GN=ECA1542 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.754e-28
Identity = 80/204 (39.22%), Postives = 113/204 (55.39%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAG-FPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISI--SKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAK 630
            P+GVV +I P+NYP+ +A  K+APAL AGN +VLKP  Q  +   ++ H   LA   P G+++ V G+G++IGD LT H  VN +S TG   TG  I     A +    MELGGK   IV +DAD+D V   I   GF  +GQ CTA   + V  +V D +          L +G P +E+ ++ P+++E     + G V  AK
Sbjct:  138 PVGVVASIAPWNYPLMMASWKLAPALAAGNCVVLKPAEQTPLTTFYLAHL--LADILPAGVVNIVFGRGADIGDALTGHEKVNMVSLTGSIATGAHILAHTAASVKRTHMELGGKAPVIVFDDADIDQVVDGIRSFGFYNAGQDCTAACRLYVQRAVYDEVVEALGKAVATLKIGDPRDETTELGPLITEPQLERVMGFVERAK 339          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_SERP5 (Betaine aldehyde dehydrogenase OS=Serratia proteamaculans (strain 568) GN=betB PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.597e-28
Identity = 83/251 (33.07%), Postives = 122/251 (48.61%), Query Frame = 1
Query:    7 TKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVG-PPEESCDITPVVSESSANFIEGLVMDAKQKGA-TFCQEYR------REGNLIWPLLLDNVRPDMRI 723
            T +  T   PLGVV  I  +NYP+ +A+ K APAL AGN+++ KP    ++ AL +   +  AG P G+ + VTG G+E+G +LT HP +  +SFTGG  TG  +   A    L+   MELGGK   I+ +DADLD  A   +   F  SGQ CT    V V  ++              + +G P +   +  P+VS +    +   +   K  GA   C   R       +G  + P +  + R +M I
Sbjct:  133 TSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTALKLAEIYTEAGLPDGVFNVVTGSGAEVGQYLTDHPGIAKVSFTGGVKTGKKVMANASGSTLKEVTMELGGKSPLIIFDDADLDRAADIAMMANFYSSGQVCTNGTRVFVPAALQAQFEAKILERVKRIRLGDPTDPQTNFGPLVSFAHMESVLRFIESGKNSGARLLCGGERVTEGEFAKGAYVAPTVFTDCRDEMEI 383          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_PSEPW (Betaine aldehyde dehydrogenase OS=Pseudomonas putida (strain W619) GN=betB PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.597e-28
Identity = 79/251 (31.47%), Postives = 122/251 (48.61%), Query Frame = 1
Query:    7 TKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGDTG----ISISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPE-ESCDITPVVSESSANFIEGLVMDAKQKGA-TFCQEYR------REGNLIWPLLLDNVRPDMRI 723
            + +  T   PLGV + I  +NYP+ +A+ K APAL AGN+++ KP    ++  L +   +  AG P G+ + +TG G E+G +LT HP +  +SFTGG T     ++ +  + +  + MELGGK   I+  DADLD  A   +   F  SGQ CT    V +   +  +           +  G PE E+ +  P+VS      + G +   KQ+GA   C   R       +G  + P +  +   DM I
Sbjct:  133 SSFVYTRREPLGVTVGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTTLKLAEIYTEAGLPDGVFNVLTGSGREVGTWLTEHPRIEKVSFTGGTTTGKKVMASASSSSLKEVTMELGGKSPLIICADADLDKAADIAMMANFYSSGQVCTNGTRVFIPAQMKAAFEAKIAERVARIRAGNPEDENTNFGPLVSFQHMESVLGYIAKGKQEGARVLCGGERLTEGDFAKGAFVAPTVFTDCTDDMTI 383          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_PSEE4 (Betaine aldehyde dehydrogenase OS=Pseudomonas entomophila (strain L48) GN=betB PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.597e-28
Identity = 79/251 (31.47%), Postives = 123/251 (49.00%), Query Frame = 1
Query:    7 TKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGDTG----ISISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPE-ESCDITPVVSESSANFIEGLVMDAKQKGA-TFCQEYR------REGNLIWPLLLDNVRPDMRI 723
            + +  T   PLGV + I  +NYP+ +A+ K APAL AGN+++ KP    ++  L +   F  AG P G+ + +TG G E+G +LT HP +  +SFTGG T     ++ +  + +  + MELGGK   I+ +DADLD  A   +   F  SGQ CT    V V  ++  +           +  G PE E+ +  P+VS      +   +   K++GA   C   R       +G  + P +  +   DM I
Sbjct:  133 SSFVYTRREPLGVTVGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTTLKLAEIFTEAGLPNGVFNVLTGSGREVGTWLTEHPRIEKVSFTGGTTTGKKVMASASSSSLKEVTMELGGKSPLIICDDADLDKAADIAMMANFYSSGQVCTNGTRVFVPAAMKAAFEAKIAERVARIRAGNPEDENTNFGPLVSFQHMESVLSYIAKGKEEGARVLCGGERLTAGDFAKGAFVAPTVFTDCTDDMTI 383          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_BURP8 (Betaine aldehyde dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=betB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.698e-28
Identity = 84/250 (33.60%), Postives = 123/250 (49.20%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEE-SCDITPVVSESSANFIEGLVMDAKQKGATFCQ--------EYRREGNLIWPLLLDNVRPDMRI 723
            +  T   PLGV   I  +NYP+ +A  K APAL AGN+++ KP     ++A  +   +  AG P G+ + V G G  +G  L+ HP +  ISFTGG +TG  +   AG   L+   MELGGK   +V EDADLD  A   +   F  +GQ CT    V V +SV  +           + VG P + S +  P+ S +  + + G +   K++GA            +Y R G  + P +  + R DM+I
Sbjct:  135 FVYTRREPLGVTAGIGAWNYPIQIACWKSAPALAAGNAMIFKPSEVTPLSASKLAEIYLEAGVPAGVFNVVQGDG-RVGAMLSAHPGIAKISFTGGVETGKKVMSMAGGSSLKEVTMELGGKSPLVVFEDADLDRAADIAVTANFFSAGQVCTNGTRVFVHQSVQPAFEARVIERVKRIRVGKPSDPSTNFGPLASAAQLDKVLGFIESGKREGARLVAGGARIVEGDYAR-GQYVQPTVFSDCRDDMKI 382          
The following BLAST results are available for this feature:
BLAST of CX296726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ROCA_OCEIH2.754e-2833.061-pyrroline-5-carboxylate dehydrogenase OS=Oceanob... [more]
ROCA2_BACHD2.754e-2831.231-pyrroline-5-carboxylate dehydrogenase 2 OS=Bacil... [more]
BETB_YERP32.754e-2832.13Betaine aldehyde dehydrogenase OS=Yersinia pseudot... [more]
BETB_PSEA72.754e-2834.26Betaine aldehyde dehydrogenase OS=Pseudomonas aeru... [more]
ALDH_ENCBU2.754e-2835.51Aldehyde dehydrogenase OS=Enchytraeus buchholzi GN... [more]
ABDH_ERWCT2.754e-2839.22Gamma-aminobutyraldehyde dehydrogenase OS=Erwinia ... [more]
BETB_SERP53.597e-2833.07Betaine aldehyde dehydrogenase OS=Serratia proteam... [more]
BETB_PSEPW3.597e-2831.47Betaine aldehyde dehydrogenase OS=Pseudomonas puti... [more]
BETB_PSEE43.597e-2831.47Betaine aldehyde dehydrogenase OS=Pseudomonas ento... [more]
BETB_BURP84.698e-2833.60Betaine aldehyde dehydrogenase OS=Burkholderia phy... [more]

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Properties
Property NameValue
Genbank descriptionC05802B04SK FerrChloL1 Citrus clementina cDNA clone C05802B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296726 ID=CX296726; Name=CX296726; organism=Citrus clementina; type=EST; length=724bp
GAGAGGACTAAATATTGTCTCACTTCAAACATTCCACTTGGTGTGGTTTT
GGCCATTCCACCATTCAACTATCCAGTCAATCTTGCCGTTTCCAAAATTG
CTCCTGCACTGATTGCTGGAAATTCCCTTGTGCTTAAGCCTCCTACTCAG
GGTGCTGTTGCTGCGCTTCACATGGTGCATTGCTTTCACTTGGCTGGTTT
TCCTAAAGGTCTTATAAGCTGTGTCACCGGGAAAGGTTCTGAGATTGGTG
ATTTCCTTACTATGCATCCTGCAGTGAACTGTATAAGCTTCACTGGTGGA
GACACTGGAATTTCAATCTCTAAGAAGGCTGGAATGATCCCTCTTCAGAT
GGAGTTGGGAGGCAAAGATGCTTGTATCGTGCTTGAGGATGCTGACCTTG
ATTTGGTTGCCGCAAACATAATAAAAGGAGGATTTTCTTACAGTGGTCAA
AGATGCACTGCAGTTAAGGTTGTCTTGGTGATGGAATCTGTAGCAGATTC
CCTGGTCGAGAAGGTTAAGGCTAAAGTGGTGAAACTGACAGTTGGCCCTC
CTGAAGAAAGCTGTGATATCACTCCAGTTGTGTCGGAATCATCTGCAAAT
TTCATTGAAGGGCTGGTTATGGATGCCAAACAGAAAGGAGCAACATTCTG
TCAAGAGTACAGGAGAGAAGGCAACCTCATCTGGCCCTTGTTGCTTGACA
ATGTTAGGCCCGATATGAGGATCG
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