CX296726

Overview
NameCX296726
Unique NameCX296726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12872 contig Ccv1_Contig12872:500..1223. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: AL1A1_RABIT (Retinal dehydrogenase 1 OS=Oryctolagus cuniculus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.698e-28
Identity = 81/245 (33.06%), Postives = 123/245 (50.20%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATF-C--QEYRREGNLIWPLLLDNVRPDMRI 723
            +C T + P+GV   I P+N+P+ + + KI PAL  GN++++KP  Q  + ALH+      AGFP G+++ V G G   G  ++ H  ++ ++FTG  + G  I + AG   L+   +ELGGK  CIV  DADLD       +G F + GQ C A   + V ES+ D              +G P     +  P + +   N I  L+   K++GA   C    +  +G  I P +  NV  +MRI
Sbjct:  147 FCYTRHEPVGVCGQIIPWNFPLVMLIWKIGPALSCGNTVIVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIYDEFVRRSVERAKKYVLGNPLAPEVNQGPQIDKEQYNKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSNVTDEMRI 391          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ABDH_PECCP (Gamma-aminobutyraldehyde dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=PC1_1415 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.698e-28
Identity = 79/203 (38.92%), Postives = 112/203 (55.17%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISI-SKKAGMIP-LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAK 630
            P+GVV +I P+NYP+ +A  K+APAL AGN +VLKP  Q  +   ++ H       P G+++ V G+G++IGD LT H  VN +S TG   TG  I S  A  +    MELGGK   IV +DAD+D V   I   GF  +GQ CTA   + V  +V D +          L +G P +E+ ++ P+++E     + G V  AK
Sbjct:  138 PVGVVASIAPWNYPLMMASWKLAPALAAGNCVVLKPAEQTPLTTFYLAHLL-AEILPAGVVNIVFGRGADIGDALTGHEKVNMVSLTGSIATGAHILSHTASSVKRTHMELGGKAPVIVFDDADIDQVVDGIRSFGFYNAGQDCTAACRLYVQRAVYDKVVEALGNAVATLKMGDPHDETTELGPLITEQQLERVVGFVERAK 339          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_PSEU5 (Betaine aldehyde dehydrogenase OS=Pseudomonas stutzeri (strain A1501) GN=betB PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.136e-28
Identity = 84/252 (33.33%), Postives = 122/252 (48.41%), Query Frame = 1
Query:    7 TKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVG-PPEESCDITPVVSESSANFIEGLVMDAKQKGATFC--------QEYRREGNLIWPLLLDNVRPDMRI 723
            + +  T   PLGVV  I  +NYP+ +A+ K APAL AGN+++ KP     ++AL +   F  AG P G+ + +TG G+ +G  +T HP +  +SFTGG  TG  +   A    L+   MELGGK   IV EDADLD  A   +   F  SGQ CT    V +   +  S           + +G P +E+ +  P+VS +  + +   +   K  GA            EY R G  + P +  +   DM I
Sbjct:  133 SSFVYTRREPLGVVAGIGAWNYPIQIALWKAAPALAAGNAMIFKPSEVTPLSALRLAEIFSEAGLPDGVFNVLTGSGAGVGALITEHPRIAKVSFTGGVATGKKVMASAAGSSLKDVTMELGGKSPLIVCEDADLDRAADIAVMANFFSSGQVCTNGTRVFIPAGLKASFEAKLLERVQRVRLGDPQQEATNFGPLVSFAHMDKVLDYIAQGKAAGARILCGGERVTEGEYAR-GAFVAPTIFSDCSDDMSI 383          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_ACIBT (Betaine aldehyde dehydrogenase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=betB PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 6.136e-28
Identity = 78/217 (35.94%), Postives = 109/217 (50.23%), Query Frame = 1
Query:    7 TKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGA 642
            + +  T   PLGVV  I  +NYP+ +A+ K APAL AGN+++ KP     + AL +   +  AG P G+ + V G G EIG +LT HP +  ISFTGG +TG  +   A    L+   MELGGK   I+ EDADL+  A   +   F  SGQ CT    V V +S+              + +G P  E  +  P+ S      +   +   KQ+GA
Sbjct:  133 SSFFYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSETTPLTALKLAEIYTEAGLPDGVFNVVQGAGREIGQWLTEHPVIEKISFTGGVETGKKVMASAAGSTLKEVTMELGGKSPLIICEDADLNRAADIAVMANFFSSGQVCTNGTRVFVPKSLLVDFEKAVVERVKRIRIGDPMAEDTNFGPLTSFPHMEKVLSFIESGKQQGA 349          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_PSEAB (Betaine aldehyde dehydrogenase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=betB PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.014e-28
Identity = 85/251 (33.86%), Postives = 117/251 (46.61%), Query Frame = 1
Query:    7 TKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVG-PPEESCDITPVVSESSANFIEGLVMDAK-QKGATFCQEYR------REGNLIWPLLLDNVRPDMRI 723
            T +  T   PLGVV  I  +NYPV +A+ K APAL AGN+++ KP     +  L +   +  AG P G+ + +TG G E+G +LT HP +  ISFTGG  TG  +   A    L+   MELGGK   I+  DADLD  A   +   F  SGQ CT    V +  S               + +G P +E+ +  P+VS      + G +   K QK    C   R        G  + P +  +   DM I
Sbjct:  133 TSFVYTRREPLGVVAGIGAWNYPVQIALWKSAPALAAGNAMIFKPSEVTPLTTLKLAEIYTEAGVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMASASSSSLKEVTMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQARFEAKVLERVQRIRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGNGAYVAPTVFTDCSDDMTI 383          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: AL1A1_RAT (Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Aldh1a1 PE=1 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 8.014e-28
Identity = 82/245 (33.47%), Postives = 121/245 (49.39%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATF-C--QEYRREGNLIWPLLLDNVRPDMRI 723
            +  T   P+GV   I P+N+P+ + + KI PAL  GN++V+KP  Q  + ALHM      AGFP G+++ V G G   G  ++ H  V+ ++FTG    G  I + AG   L+   +ELGGK  CIV  DADLD+       G F + GQ C A   + V ESV D              +G P  +  +  P + +   + I  L+   K++GA   C    +  +G  + P +  NV  +MRI
Sbjct:  152 FTFTRREPIGVCGQIIPWNFPLLMFIWKIGPALSCGNTVVVKPAEQTPLTALHMASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTQVGKLIKEAAGKSNLKRVTLELGGKSPCIVFADADLDIAVEFAHHGVFYHQGQCCVAASRIFVEESVYDEFVRKSVERAKKYVLGNPLTQGINQGPQIDKEQHDKILDLIESGKKEGAKLECGGGRWGNKGFFVQPTVFSNVTDEMRI 396          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_PSEPG (Betaine aldehyde dehydrogenase OS=Pseudomonas putida (strain GB-1) GN=betB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.047e-27
Identity = 78/251 (31.08%), Postives = 123/251 (49.00%), Query Frame = 1
Query:    7 TKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGDTG----ISISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPE-ESCDITPVVSESSANFIEGLVMDAKQKGA-TFCQEYR------REGNLIWPLLLDNVRPDMRI 723
            + +  T   PLGV + I  +NYP+ +A+ K APAL AGN+++ KP    ++  L +   +  AG P G+ + +TG G E+G +LT HP +  +SFTGG T     ++ +  + +  + MELGGK   I+  DADLD  A   +   F  SGQ CT    V +   +  +           + VG PE E+ +  P+VS +    +   +   K++GA   C   R       +G  + P +  +   DM I
Sbjct:  133 SSFVYTRREPLGVTVGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTTLKLAEIYTEAGLPNGVFNVLTGSGREVGTWLTEHPRIEKVSFTGGTTTGKKVMASASSSSLKEVTMELGGKSPLIICADADLDKAADIAMMANFYSSGQVCTNGTRVFIPAEMKAAFEAKIAERVARIRVGNPEDENTNFGPLVSFAHMENVLSYIAKGKEEGARVLCGGERLTEGEFAKGAFVAPTVFTDCSDDMTI 383          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_ACIBY (Betaine aldehyde dehydrogenase OS=Acinetobacter baumannii (strain AYE) GN=betB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.047e-27
Identity = 79/217 (36.41%), Postives = 108/217 (49.77%), Query Frame = 1
Query:    7 TKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGA 642
            + +  T   PLGVV  I  +NYP+ +A+ K APAL AGN+++ KP     + AL +   +  AG P G+ + V G G EIG +LT HP +  ISFTGG +TG  +   A    L+   MELGGK   I+ EDADL+  A   +   F  SGQ CT    V V +S               + VG P  E  +  P+ S      +   +   KQ+GA
Sbjct:  133 SSFFYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSETTPLTALKLAEIYTEAGLPDGVFNVVQGAGREIGQWLTEHPVIEKISFTGGVETGKKVMASAAGSTLKEVTMELGGKSPLIICEDADLNRAADIAVMANFFSSGQVCTNGTRVFVPKSRLADFEKAVVERVKRIRVGDPMAEDTNFGPLTSFPHMEKVLSFIESGKQQGA 349          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_ACIB5 (Betaine aldehyde dehydrogenase OS=Acinetobacter baumannii (strain AB0057) GN=betB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.047e-27
Identity = 79/217 (36.41%), Postives = 108/217 (49.77%), Query Frame = 1
Query:    7 TKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGA 642
            + +  T   PLGVV  I  +NYP+ +A+ K APAL AGN+++ KP     + AL +   +  AG P G+ + V G G EIG +LT HP +  ISFTGG +TG  +   A    L+   MELGGK   I+ EDADL+  A   +   F  SGQ CT    V V +S               + VG P  E  +  P+ S      +   +   KQ+GA
Sbjct:  133 SSFFYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSETTPLTALKLAEIYTEAGLPDGVFNVVQGAGREIGQWLTEHPVIEKISFTGGVETGKKVMASAAGSTLKEVTMELGGKSPLIICEDADLNRAADIAVMANFFSSGQVCTNGTRVFVPKSRLADFEKAVVERVKRIRVGDPMAEDTNFGPLTSFPHMEKVLSFIESGKQQGA 349          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_ACIB3 (Betaine aldehyde dehydrogenase OS=Acinetobacter baumannii (strain AB307-0294) GN=betB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.047e-27
Identity = 79/217 (36.41%), Postives = 108/217 (49.77%), Query Frame = 1
Query:    7 TKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGA 642
            + +  T   PLGVV  I  +NYP+ +A+ K APAL AGN+++ KP     + AL +   +  AG P G+ + V G G EIG +LT HP +  ISFTGG +TG  +   A    L+   MELGGK   I+ EDADL+  A   +   F  SGQ CT    V V +S               + VG P  E  +  P+ S      +   +   KQ+GA
Sbjct:  133 SSFFYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSETTPLTALKLAEIYTEAGLPDGVFNVVQGAGREIGQWLTEHPVIEKISFTGGVETGKKVMASAAGSTLKEVTMELGGKSPLIICEDADLNRAADIAVMANFFSSGQVCTNGTRVFVPKSRLADFEKAVVERVKRIRVGDPMAEDTNFGPLTSFPHMEKVLSFIESGKQQGA 349          
The following BLAST results are available for this feature:
BLAST of CX296726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AL1A1_RABIT4.698e-2833.06Retinal dehydrogenase 1 OS=Oryctolagus cuniculus G... [more]
ABDH_PECCP4.698e-2838.92Gamma-aminobutyraldehyde dehydrogenase OS=Pectobac... [more]
BETB_PSEU56.136e-2833.33Betaine aldehyde dehydrogenase OS=Pseudomonas stut... [more]
BETB_ACIBT6.136e-2835.94Betaine aldehyde dehydrogenase OS=Acinetobacter ba... [more]
BETB_PSEAB8.014e-2833.86Betaine aldehyde dehydrogenase OS=Pseudomonas aeru... [more]
AL1A1_RAT8.014e-2833.47Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Al... [more]
BETB_PSEPG1.047e-2731.08Betaine aldehyde dehydrogenase OS=Pseudomonas puti... [more]
BETB_ACIBY1.047e-2736.41Betaine aldehyde dehydrogenase OS=Acinetobacter ba... [more]
BETB_ACIB51.047e-2736.41Betaine aldehyde dehydrogenase OS=Acinetobacter ba... [more]
BETB_ACIB31.047e-2736.41Betaine aldehyde dehydrogenase OS=Acinetobacter ba... [more]

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Properties
Property NameValue
Genbank descriptionC05802B04SK FerrChloL1 Citrus clementina cDNA clone C05802B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296726 ID=CX296726; Name=CX296726; organism=Citrus clementina; type=EST; length=724bp
GAGAGGACTAAATATTGTCTCACTTCAAACATTCCACTTGGTGTGGTTTT
GGCCATTCCACCATTCAACTATCCAGTCAATCTTGCCGTTTCCAAAATTG
CTCCTGCACTGATTGCTGGAAATTCCCTTGTGCTTAAGCCTCCTACTCAG
GGTGCTGTTGCTGCGCTTCACATGGTGCATTGCTTTCACTTGGCTGGTTT
TCCTAAAGGTCTTATAAGCTGTGTCACCGGGAAAGGTTCTGAGATTGGTG
ATTTCCTTACTATGCATCCTGCAGTGAACTGTATAAGCTTCACTGGTGGA
GACACTGGAATTTCAATCTCTAAGAAGGCTGGAATGATCCCTCTTCAGAT
GGAGTTGGGAGGCAAAGATGCTTGTATCGTGCTTGAGGATGCTGACCTTG
ATTTGGTTGCCGCAAACATAATAAAAGGAGGATTTTCTTACAGTGGTCAA
AGATGCACTGCAGTTAAGGTTGTCTTGGTGATGGAATCTGTAGCAGATTC
CCTGGTCGAGAAGGTTAAGGCTAAAGTGGTGAAACTGACAGTTGGCCCTC
CTGAAGAAAGCTGTGATATCACTCCAGTTGTGTCGGAATCATCTGCAAAT
TTCATTGAAGGGCTGGTTATGGATGCCAAACAGAAAGGAGCAACATTCTG
TCAAGAGTACAGGAGAGAAGGCAACCTCATCTGGCCCTTGTTGCTTGACA
ATGTTAGGCCCGATATGAGGATCG
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