CX296727

Overview
NameCX296727
Unique NameCX296727
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length383
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig588 contig Ccv1_Contig588:918..1300. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296727 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 4.226e-54
Identity = 100/127 (78.74%), Postives = 107/127 (84.25%), Query Frame = 2
Query:    2 LPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 382
            LPGMYNKE+N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V + DIV+LVD  PGQSIDFFGALRARVYDDEVRKW          K LVNSKE  PTF+QP+MT++K
Sbjct:  270 LPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDK 396          
BLAST of CX296727 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 5.519e-54
Identity = 98/127 (77.17%), Postives = 108/127 (85.04%), Query Frame = 2
Query:    2 LPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 382
            LPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++ ++K+VDTFPGQSIDFFGALRARVYDDEVRKW            L+NS +  PTFEQP+MT+EK
Sbjct:  270 LPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEK 396          
BLAST of CX296727 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 2.739e-53
Identity = 98/127 (77.17%), Postives = 106/127 (83.46%), Query Frame = 2
Query:    2 LPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 382
            LPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DNV  +D+VK+VD FPGQSIDFFGALRARVYDDEVRKW            L+NS +  PTFEQP+MT+EK
Sbjct:  270 LPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEK 396          
BLAST of CX296727 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 4.672e-53
Identity = 100/127 (78.74%), Postives = 104/127 (81.89%), Query Frame = 2
Query:    2 LPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 382
            LPGMYNKEEN RVPII TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D + D+DIV LVD FPGQSIDFFGALRARVYDDEVRK+          K LVNS+E  P FEQP MT EK
Sbjct:  266 LPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEK 392          
BLAST of CX296727 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 1.963e-51
Identity = 95/127 (74.80%), Postives = 103/127 (81.10%), Query Frame = 2
Query:    2 LPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 382
            LPGMYNK++N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIF+ D V  + +VKLVD FPGQSIDFFGALRARVY DEVRKW          K LVNSK+  P FEQP MT++K
Sbjct:  264 LPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQK 390          
BLAST of CX296727 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.405e-41
Identity = 80/126 (63.49%), Postives = 95/126 (75.40%), Query Frame = 2
Query:    2 LPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTME 379
            LPG+Y  EE PRVPI+ TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV   ++  LVDTFPGQSIDFFGALRARVYDD VR+W          + LVN+++       P+++M+
Sbjct:  239 LPGVYKNEEIPRVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQKV---AMPKVSMD 361          
BLAST of CX296727 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.393e-35
Identity = 68/125 (54.40%), Postives = 88/125 (70.40%), Query Frame = 2
Query:    2 LPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTM 376
            LPG Y+     RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R++++G+  GIF  D ++  D+ KLVD+FP QSIDFF ALR+R+YD+++R +            +VNS E  P F++P  T+
Sbjct:  139 LPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRDEKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTL 263          
BLAST of CX296727 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.278e-34
Identity = 69/125 (55.20%), Postives = 88/125 (70.40%), Query Frame = 2
Query:    2 LPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTM 376
            LPG Y+     RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+D++G+  GIF  D ++  +I +LVDTFP QSIDFF ALR+R+YD ++R +            +VNS EA P F++P  ++
Sbjct:  139 LPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERISLRVVNSLEAPPEFKKPDFSL 263          
BLAST of CX296727 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.244e-13
Identity = 45/73 (61.64%), Postives = 45/73 (61.64%), Query Frame = 2
Query:   35 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALR 253
            RVPIIVTGNDFSTLYAPLI                RIGVC GIFR           LVDTFPGQSIDFFGALR
Sbjct:   95 RVPIIVTGNDFSTLYAPLI----------------RIGVCTGIFR-----------LVDTFPGQSIDFFGALR 140          
The following BLAST results are available for this feature:
BLAST of CX296727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA_PHAVU4.226e-5478.74Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC5.519e-5477.17Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC2.739e-5377.17Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH4.672e-5378.74Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL1.963e-5174.80Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE2.405e-4163.49Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC4.393e-3554.40Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP1.278e-3455.20Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY1.244e-1361.64Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionC05802B05SK FerrChloL1 Citrus clementina cDNA clone C05802B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296727 ID=CX296727; Name=CX296727; organism=Citrus clementina; type=EST; length=383bp
ACTCCCTGGTATGTACAACAAGGAGGAGAACCCCCGTGTCCCAATCATAG
TCACCGGTAATGACTTCTCAACATTGTATGCTCCTCTCATCCGTGATGGT
CGTATGGAGAAATTCTACTGGGCACCTACAAGGGAGGACCGTATTGGTGT
GTGCAAGGGTATCTTCAGGAATGACAATGTGGCTGATGACGACATTGTCA
AGCTTGTCGACACCTTCCCCGGCCAATCCATTGATTTCTTTGGAGCCCTG
AGGGCCAGAGTCTATGATGATGAGGTGAGGAAGTGGATCTCTGGTGTTGG
TGTTGGAAGCATTGGCAAGAGCCTTGTGAACTCAAAGGAAGCAGCCCCAA
CATTCGAGCAACCAAGGATGACAATGGAGAAGC
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