CX296728

Overview
NameCX296728
Unique NameCX296728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9343 contig Ccv1_Contig9343:36..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.244e-25
Identity = 60/125 (48.00%), Postives = 76/125 (60.80%), Query Frame = 3
Query:  336 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            +S WYG +R  +LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H+RWAMLGALG + PE+L   G     E VW++ G        LDYLG P   L  +Q ++ I  CQ +L
Sbjct:   59 DSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--QLIHAQSILAIWACQVIL 180          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.244e-25
Identity = 67/178 (37.64%), Postives = 91/178 (51.12%), Query Frame = 3
Query:  177 AGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            A  +  S+  F       +S   E+  N  +  +K   +        A+ A + S WYG +R ++LGP   + PSYLTGE P DYG+D AGLS DP  F K    E++H RWAMLGALG + PE+    G     E VW++ G        LDYLG P   L  +Q ++ I  CQ +L
Sbjct:    3 ATTMALSSSSFAGKAVKLSSSSSEITGNGKVTMRKTVTK--------AKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNG-IKFGEAVWFKAGAQIFSEGGLDYLGNPS--LVHAQSILAIWACQVVL 169          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.244e-25
Identity = 68/178 (38.20%), Postives = 94/178 (52.81%), Query Frame = 3
Query:  177 AGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            A  +  S+  F A KA+      E+ +N  +  +K   +        A+   + S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H RW MLGALG + PE+    G     E VW++ G    +   LDYLG P   L  +Q ++ I  CQ +L
Sbjct:    3 AATMALSSSSF-AGKAVNVPSSSEITRNGKVTMRKTVTK--------AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGV-KFGEAVWFKAGSQIFKEGGLDYLGNPS--LVHAQSILAIWACQVVL 168          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.625e-25
Identity = 60/125 (48.00%), Postives = 76/125 (60.80%), Query Frame = 3
Query:  336 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            +S WYG +R  +LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H+RWAMLGALG + PE+L   G     E VW++ G        LDYLG P   L  +Q ++ I  CQ +L
Sbjct:   59 DSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--QLIHAQSILAIWACQVIL 180          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.625e-25
Identity = 61/128 (47.66%), Postives = 78/128 (60.94%), Query Frame = 3
Query:  327 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            A + S WYG +R  +LGP+  + PSYLTGE PGDYG+D AGLS DP  F K    E++H+RWAMLGALG + PE+L   G     E VW++ G        LDYLG P   L  +Q ++ I  CQ +L
Sbjct:   43 ASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LIHAQSILAIWACQVVL 167          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.625e-25
Identity = 60/131 (45.80%), Postives = 77/131 (58.78%), Query Frame = 3
Query:  318 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            A+   + S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H RWAMLGALG + PE+    G     E VW++ G        LDYLG P   L  +Q ++ I  CQ +L
Sbjct:   41 AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWACQVVL 168          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.625e-25
Identity = 61/131 (46.56%), Postives = 76/131 (58.02%), Query Frame = 3
Query:  318 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            A+   + S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H RWAMLGALG + PE+    G     E VW + G        LDYLG P   L  +Q ++ I  CQ LL
Sbjct:   42 AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGV-KFGEAVWLKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWACQVLL 169          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.123e-25
Identity = 70/172 (40.70%), Postives = 91/172 (52.91%), Query Frame = 3
Query:  228 ANSPLGELLQNRMLETKKAALQDSSKFKALAR-----------QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            A+S     L +  L  K+  L  SS+    AR            A + S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H+RWAMLGALG + PE+L   G     E VW++ G        LDYLG P   L  +Q ++ I   Q +L
Sbjct:    3 ASSSSSMALSSPTLAGKQLKLNPSSQELGAARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWATQVIL 171          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.123e-25
Identity = 61/128 (47.66%), Postives = 77/128 (60.16%), Query Frame = 3
Query:  327 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            A + S WYG +R  +LGP+  + PSYLTGE PGDYG+D AGLS DP  F K    E++H RWAMLGALG + PE+L   G     E VW++ G        LDYLG P   L  +Q ++ I  CQ +L
Sbjct:   43 AASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LIHAQSILAIWACQVVL 167          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.772e-25
Identity = 60/128 (46.88%), Postives = 77/128 (60.16%), Query Frame = 3
Query:  327 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            A + S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H+RWAMLGALG + PE+L   G     E VW++ G        LDYLG P   L  +Q ++ I   Q +L
Sbjct:   46 ASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWATQVIL 170          
The following BLAST results are available for this feature:
BLAST of CX296728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB2A_PYRPY1.244e-2548.00Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB23_PETSP1.244e-2537.64Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_PETSP1.244e-2538.20Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2A_PINSY1.625e-2548.00Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB29_MAIZE1.625e-2547.66Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB24_PETSP1.625e-2545.80Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB22_PETSP1.625e-2546.56Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB22_PEA2.123e-2540.70Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB22_MAIZE2.123e-2547.66Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB28_PEA2.772e-2546.88Chlorophyll a-b binding protein 8, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC05802B06SK FerrChloL1 Citrus clementina cDNA clone C05802B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296728 ID=CX296728; Name=CX296728; organism=Citrus clementina; type=EST; length=710bp
CCGAATTCGGCACGAGGCAGGCGCATGCCACGGAGGATTGGCTTTCATGG
AGTTGTTGTTCGAGCTGGAGTGGAGGATGCTCGCTCAGGAAGATTTTAGC
CCTGAAACCTTCACGAAAGAATCTTCTCCTTAAACCCAAGTCTTCTTTAG
TCTGCAAAGCATCGTGGCAAGAGCTTGCGGGAGTGTTAGTATTCTCGGCA
ATACCCTTCACGGCTGTGAAAGCCATCGCAAATAGCCCTCTCGGAGAATT
GCTCCAAAACAGAATGTTGGAGACCAAGAAAGCTGCTCTCCAAGACTCTT
CCAAGTTCAAAGCCTTGGCTCGTCAAGCACGAAATGAAAGCTTGTGGTAT
GGAGAAGAGAGGCCTCGATGGCTTGGTCCCATTCCGTATGACTATCCTTC
ATATCTTACCGGAGAGCTACCTGGGGATTATGGCTTTGATGTTGCTGGTC
TGAGCAAGGATCCTATGGCTTTCCAGAAATACTTCAACTTTGAAATACTT
CATGCTCGTTGGGCCATGCTTGGAGCCCTTGGTGCCCTAGTTCCAGAAGT
TTTAGATATGGTAGGAGCCTTCCACTTGGTTGAGCCTGTCTGGTGGCGTG
TTGGATACTCAAAGCTCCAGGGAGAGACCCTGGACTACCTTGGTATCCCA
GGTCTCCATTTAGCTGGAAGCCAAGGAGTAATTGTCATTGCTATTTGCCA
AGCCCTCCTG
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