CX296731
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3) HSP 1 Score: 90.1225 bits (222), Expect = 1.176e-17 Identity = 76/226 (33.63%), Postives = 93/226 (41.15%), Query Frame = 1 Query: 7 LAGSLPGDYGFDPLGLGKDPAF---------------------------------------------LKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG-------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528 L GSLPGD GFDPLGL K F L +RE ELIHGRWAM A +G V +A +G+ W EAG + G PFS L+ +++L+G E R + NPE + YPGG FDPL LA D E+ RLK AEIKHARLAMV+ + +A Sbjct: 63 LDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVELDGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSE-TNPEKRC----------------------YPGG-VFDPLKLAS--------EDEERAFRLKTAEIKHARLAMVSFFGYGVQA 256
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.620e-17 Identity = 64/192 (33.33%), Postives = 98/192 (51.04%), Query Frame = 1 Query: 7 LAGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGI----FVGQAW-----SGIPWFEAGADPGAIAPFSFG----SLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 525 L GSLPGDYGFDPLGL DP F+ +W E+I+GR+AM VG ++G+ + + WF+ G P A +++ +L ++ LMG+ E +R+ D+ P S ++ E +G YPGG FF+PL D + L LK+ E+K+ RLAM+A+L ++ + Sbjct: 68 LDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPA-GTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFL----GLEKGFGGSGNPAYPGGPFFNPLGFG---------KDEKSLKELKLKEVKNGRLAMLAILGYFIQ 244
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.620e-17 Identity = 69/196 (35.20%), Postives = 87/196 (44.39%), Query Frame = 1 Query: 7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528 L G PGDYG+D GL DP R E+IHGRWAM +G V Q W G+ WF+AG+ +P + S ++LG Q+LLMG VE R N + GE YPGG++FDPL LA D LKV EIK+ RLAM +M F+ +A Sbjct: 70 LNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFR----------------------INGLDGVGEGNDLYPGGQYFDPLGLA---------DDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 5.838e-17 Identity = 68/181 (37.57%), Postives = 91/181 (50.28%), Query Frame = 1 Query: 7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEA---GADPGAIA-----PFSFGSL---LGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIF 516 L GS PGD+GFD LGLG+ PA L+ Y+E+ELIH RWAM AV GI V +A W +A A PG A P +G+L L + L + +VE +R + + ++ YPGG FDPL Y D K + LKV EIK+ RLA++A++ F Sbjct: 59 LDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR-----------------------SMEKDSEKKKYPGGA-FDPL---------GYSKDPAKFEELKVKEIKNGRLALLAIVGF 206
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.897e-16 Identity = 63/193 (32.64%), Postives = 97/193 (50.26%), Query Frame = 1 Query: 7 LAGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGI----FVGQAW-----SGIPWFEAGADPGAIAPFSFG----SLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528 L G LPGD+GFDPLGL DP F+ KW E+I+GR+AM G +G+A + + WF+ G P A +++ +L ++ LMG+ E +R+ D+ P S ++ E +G+ YPGG F+PL D + + LK+ EIK+ RLAM+A+L ++ +A Sbjct: 66 LDGRLPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPA-GTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFL----GLEKGLGGSGDPAYPGGPLFNPLGFG---------KDEKSMKELKLKEIKNGRLAMLAILGYFIQA 243
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.438e-15 Identity = 66/196 (33.67%), Postives = 85/196 (43.37%), Query Frame = 1 Query: 7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528 L G PGDYG+D GL DP R E+IHGRWAM +G V + W + WF+AG+ +P + S ++LG Q++LMG VE R N GE YPGG++FDPL LA D LKV EIK+ RLAM +M F+ +A Sbjct: 67 LNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR----------------------INGLPGVGEGNDLYPGGQYFDPLGLA---------DDPTTFAELKVKEIKNGRLAMFSMFGFFVQA 231
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.076e-14 Identity = 68/191 (35.60%), Postives = 82/191 (42.93%), Query Frame = 1 Query: 7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGADPGAIAPFSFGSL--LGTQLLLMGWVESKRWVDFFNPESQSVEWATP--WSRTAENFANATGEQG------YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528 L G PGDYG+D GL DP RE E+IH RWAM +G G + WF+AG+ FS G L LG Q L+ + +S WAT E + A G G YPGG FDPL LA D E LKV EIK+ RLAM +M F+ +A Sbjct: 49 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQ-----IFSEGGLDYLGNQSLI-------------HAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGS-FDPLALA---------DDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 211
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14 Identity = 65/194 (33.51%), Postives = 85/194 (43.81%), Query Frame = 1 Query: 7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI--------FVGQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528 L G PGDYG+D GL DP YRE ELIH RWA+ +GI + G + WF+AGA + I S + L Q++LMG E+ R + +E F + + YPGG FDPL LA D + LKV EIK+ RLAM + L F+ +A Sbjct: 54 LTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR-----------------ANGGSEGFLDDL-DTLYPGGP-FDPLGLA---------DDPDTFAELKVKEIKNGRLAMFSCLGFFVQA 219
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14 Identity = 64/193 (33.16%), Postives = 83/193 (43.01%), Query Frame = 1 Query: 7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528 L G PGDYG+D GL DP RE E+IH RWAM +G G + WF+AG+ +P + S S+ TQ++LMG VE R P + V + YPGG FDPL LA D E+ LKV E+K+ RLAM +M F+ +A Sbjct: 68 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAG--GPLGEIV------------------DPLYPGGS-FDPLGLA---------EDPERSAELKVKELKNGRLAMFSMFGFFVQA 230
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.542e-14 Identity = 61/194 (31.44%), Postives = 82/194 (42.27%), Query Frame = 1 Query: 7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI--------FVGQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528 L G PGDYG+D GL DP K YRE E+IH RWA+ +GI + G + WF+AGA P I + + L Q++LMG +E R P + ++ P G+ FDPL LA D + LKV EIK+ RLAM + F+ +A Sbjct: 59 LTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNG--GPAGEGLDPLYP-------------------GESFDPLGLA---------DDPDTFAELKVKEIKNGRLAMFSCFGFFVQA 222 The following BLAST results are available for this feature:
BLAST of CX296731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296731 ID=CX296731; Name=CX296731; organism=Citrus clementina; type=EST; length=689bpback to top |