CX296731

Overview
NameCX296731
Unique NameCX296731
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9765 contig Ccv1_Contig9765:296..984. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 1.176e-17
Identity = 76/226 (33.63%), Postives = 93/226 (41.15%), Query Frame = 1
Query:    7 LAGSLPGDYGFDPLGLGKDPAF---------------------------------------------LKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG-------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L GSLPGD GFDPLGL K   F                                             L  +RE ELIHGRWAM A +G  V +A +G+ W EAG       +  G   PFS   L+  +++L+G  E  R  +  NPE +                       YPGG  FDPL LA          D E+  RLK AEIKHARLAMV+   +  +A
Sbjct:   63 LDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVELDGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSE-TNPEKRC----------------------YPGG-VFDPLKLAS--------EDEERAFRLKTAEIKHARLAMVSFFGYGVQA 256          
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.620e-17
Identity = 64/192 (33.33%), Postives = 98/192 (51.04%), Query Frame = 1
Query:    7 LAGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGI----FVGQAW-----SGIPWFEAGADPGAIAPFSFG----SLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 525
            L GSLPGDYGFDPLGL  DP     F+  +W    E+I+GR+AM   VG     ++G+       + + WF+ G  P A   +++     +L   ++ LMG+ E +R+ D+  P S   ++        E     +G   YPGG FF+PL             D + L  LK+ E+K+ RLAM+A+L ++ +
Sbjct:   68 LDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPA-GTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFL----GLEKGFGGSGNPAYPGGPFFNPLGFG---------KDEKSLKELKLKEVKNGRLAMLAILGYFIQ 244          
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.620e-17
Identity = 69/196 (35.20%), Postives = 87/196 (44.39%), Query Frame = 1
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP      R  E+IHGRWAM   +G     V Q W G+      WF+AG+            +P  +   S  ++LG Q+LLMG VE  R                       N  +  GE    YPGG++FDPL LA          D      LKV EIK+ RLAM +M  F+ +A
Sbjct:   70 LNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFR----------------------INGLDGVGEGNDLYPGGQYFDPLGLA---------DDPVTFAELKVKEIKNGRLAMFSMFGFFVQA 234          
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.838e-17
Identity = 68/181 (37.57%), Postives = 91/181 (50.28%), Query Frame = 1
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEA---GADPGAIA-----PFSFGSL---LGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIF 516
            L GS PGD+GFD LGLG+ PA L+ Y+E+ELIH RWAM AV GI V +A     W +A    A PG  A     P  +G+L   L  + L + +VE +R                       +    + ++ YPGG  FDPL          Y  D  K + LKV EIK+ RLA++A++ F
Sbjct:   59 LDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR-----------------------SMEKDSEKKKYPGGA-FDPL---------GYSKDPAKFEELKVKEIKNGRLALLAIVGF 206          
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.897e-16
Identity = 63/193 (32.64%), Postives = 97/193 (50.26%), Query Frame = 1
Query:    7 LAGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGI----FVGQAW-----SGIPWFEAGADPGAIAPFSFG----SLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G LPGD+GFDPLGL  DP     F+  KW    E+I+GR+AM    G      +G+A      + + WF+ G  P A   +++     +L   ++ LMG+ E +R+ D+  P S   ++        E     +G+  YPGG  F+PL             D + +  LK+ EIK+ RLAM+A+L ++ +A
Sbjct:   66 LDGRLPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPA-GTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFL----GLEKGLGGSGDPAYPGGPLFNPLGFG---------KDEKSMKELKLKEIKNGRLAMLAILGYFIQA 243          
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.438e-15
Identity = 66/196 (33.67%), Postives = 85/196 (43.37%), Query Frame = 1
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP      R  E+IHGRWAM   +G     V + W  +      WF+AG+            +P  +   S  ++LG Q++LMG VE  R                       N     GE    YPGG++FDPL LA          D      LKV EIK+ RLAM +M  F+ +A
Sbjct:   67 LNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR----------------------INGLPGVGEGNDLYPGGQYFDPLGLA---------DDPTTFAELKVKEIKNGRLAMFSMFGFFVQA 231          
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.076e-14
Identity = 68/191 (35.60%), Postives = 82/191 (42.93%), Query Frame = 1
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGADPGAIAPFSFGSL--LGTQLLLMGWVESKRWVDFFNPESQSVEWATP--WSRTAENFANATGEQG------YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+       FS G L  LG Q L+             + +S    WAT        E +  A G  G      YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+ +A
Sbjct:   49 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQ-----IFSEGGLDYLGNQSLI-------------HAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGS-FDPLALA---------DDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 211          
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14
Identity = 65/194 (33.51%), Postives = 85/194 (43.81%), Query Frame = 1
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI--------FVGQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP     YRE ELIH RWA+   +GI        + G  +    WF+AGA            +   I   S  + L  Q++LMG  E+ R                  +  +E F +   +  YPGG  FDPL LA          D +    LKV EIK+ RLAM + L F+ +A
Sbjct:   54 LTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR-----------------ANGGSEGFLDDL-DTLYPGGP-FDPLGLA---------DDPDTFAELKVKEIKNGRLAMFSCLGFFVQA 219          
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14
Identity = 64/193 (33.16%), Postives = 83/193 (43.01%), Query Frame = 1
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  S+  TQ++LMG VE  R      P  + V                  +  YPGG  FDPL LA          D E+   LKV E+K+ RLAM +M  F+ +A
Sbjct:   68 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAG--GPLGEIV------------------DPLYPGGS-FDPLGLA---------EDPERSAELKVKELKNGRLAMFSMFGFFVQA 230          
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.542e-14
Identity = 61/194 (31.44%), Postives = 82/194 (42.27%), Query Frame = 1
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI--------FVGQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP   K YRE E+IH RWA+   +GI        + G  +    WF+AGA             P  I   +  + L  Q++LMG +E  R      P  + ++   P                   G+ FDPL LA          D +    LKV EIK+ RLAM +   F+ +A
Sbjct:   59 LTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNG--GPAGEGLDPLYP-------------------GESFDPLGLA---------DDPDTFAELKVKEIKNGRLAMFSCFGFFVQA 222          
The following BLAST results are available for this feature:
BLAST of CX296731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB29_CHLRE1.176e-1733.63Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB23_PEA2.620e-1733.33Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB23_HORVU2.620e-1735.20Chlorophyll a-b binding protein of LHCII type III,... [more]
CB11_SOLLC5.838e-1737.57Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB13_SOLLC2.897e-1632.64Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_SOLLC1.438e-1533.67Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_SOYBN2.076e-1435.60Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2_DUNTE2.712e-1433.51Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_APIGR2.712e-1433.16Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2_CHLMO3.542e-1431.44Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionC05802B09SK FerrChloL1 Citrus clementina cDNA clone C05802B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296731 ID=CX296731; Name=CX296731; organism=Citrus clementina; type=EST; length=689bp
CGAGGGCTCGCTGGCTCTCTCCCAGGTGACTACGGATTCGACCCACTTGG
GCTTGGAAAGGACCCAGCATTCCTGAAATGGTACAGAGAAGCAGAACTGA
TCCACGGACGATGGGCAATGGCTGCAGTTGTTGGGATATTCGTCGGACAG
GCGTGGAGTGGGATTCCATGGTTCGAGGCTGGAGCAGATCCTGGAGCCAT
AGCACCCTTCTCCTTCGGCTCACTCCTGGGAACCCAGCTTCTCCTTATGG
GTTGGGTTGAGAGCAAGCGGTGGGTTGATTTTTTCAATCCTGAATCTCAA
TCAGTTGAATGGGCAACACCTTGGTCAAGAACTGCTGAAAACTTTGCCAA
TGCGACTGGTGAACAAGGCTACCCTGGTGGAAAGTTTTTTGATCCCTTAT
GTTTGGCTGGAACAATTAAGGATGGTGTCTACATTCCTGACACTGAGAAG
CTTGACAGGCTCAAAGTTGCTGAGATTAAACATGCTAGGCTTGCTATGGT
GGCCATGTTGATTTTCTACTTTGAAGCTGGCCAAGGCAAGACGCCACTTG
GGGCTCTTGGTTTGTAAAACATGCTTATGTAGATAACTCACTGATTGGTG
TTAAAGCGTAATCAATCGGATGTATACCTCGTGCCGAATTCGGCACGAGG
CCTCGTGCCGAATTCGGCACGAAGGGGGGGCCCGGTACC
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