CX296731

Overview
NameCX296731
Unique NameCX296731
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9765 contig Ccv1_Contig9765:296..984. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.041e-14
Identity = 63/193 (32.64%), Postives = 82/193 (42.49%), Query Frame = 1 
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++  TQ++LMG VE  R      P  + V                  +  YPGG  FDPL LA          D E    LKV E+K+ RLAM +M  F+ +A
Sbjct:   72 LTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLGEVV------------------DPLYPGGS-FDPLGLA---------DDPEAFAELKVKELKNGRLAMFSMFGFFVQA 234
[Close]
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.041e-14
Identity = 63/193 (32.64%), Postives = 80/193 (41.45%), Query Frame = 1 
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  I   S  ++  TQ++LMG VE  R                     A        +  YPGG F DPL LA          D E    LKV E+K+ RLAM +M  F+ +A
Sbjct:   67 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYR--------------------IAGGPLGEVTDPIYPGGSF-DPLGLAD---------DPEAFAELKVKELKNGRLAMFSMFGFFVQA 229
[Close]
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.041e-14
Identity = 63/193 (32.64%), Postives = 82/193 (42.49%), Query Frame = 1 
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++  TQ++LMG VE  R      P  + V                  +  YPGG  FDPL LA          D E    LKV E+K+ RLAM +M  F+ +A
Sbjct:   73 LTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLGEVV------------------DPLYPGGS-FDPLGLA---------DDPEAFAELKVKELKNGRLAMFSMFGFFVQA 235
[Close]
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.890e-14
Identity = 63/193 (32.64%), Postives = 83/193 (43.01%), Query Frame = 1 
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++  TQ++LMG VE  R V    P  ++ +                    YPGG  FDPL LA          D E    LKV E+K+ RLAM +M  F+ +A
Sbjct:   70 LTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR-VAGNGPLGEAEDLL------------------YPGGS-FDPLGLA---------TDPEAFAELKVKELKNGRLAMFSMFGFFVQA 233
[Close]
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.890e-14
Identity = 63/193 (32.64%), Postives = 80/193 (41.45%), Query Frame = 1 
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++  TQ++LMG VE  R                      E       +  YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+ +A
Sbjct:   69 LTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR-------------------VAGEGPLGEAEDLLYPGGS-FDPLGLA---------TDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 232
[Close]
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.890e-14
Identity = 63/193 (32.64%), Postives = 82/193 (42.49%), Query Frame = 1 
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AGA            +P  +   S  ++  TQ++LMG +E  R      P  + ++                    YPGG F DPL LA          D E    LKV EIK+ RLAM +M  F+ +A
Sbjct:   68 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGG--GPLGEGLDPL------------------YPGGAF-DPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFVQA 230
[Close]
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.890e-14
Identity = 63/193 (32.64%), Postives = 83/193 (43.01%), Query Frame = 1 
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++  TQ++LMG VE  R V    P  ++ +                    YPGG  FDPL LA          D E    LKV E+K+ RLAM +M  F+ +A
Sbjct:   70 LTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR-VAGNGPLGEAEDLL------------------YPGGS-FDPLGLA---------TDPEAFAELKVKELKNGRLAMFSMFGFFVQA 233
[Close]
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 60/193 (31.09%), Postives = 80/193 (41.45%), Query Frame = 1 
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP   K YRE ELIH RWAM   +G          G  +    WF+AGA            +P  +   +  +    Q++LMG +E  R      P  + ++   P                   G+ FDPL LA          D +    LKV EIK+ RLA  +M  F+ +A
Sbjct:   57 LTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNG--GPAGEGLDPLYP-------------------GESFDPLGLA---------DDPDTFAELKVKEIKNGRLASFSMFGFFVQA 219
[Close]
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 63/193 (32.64%), Postives = 84/193 (43.52%), Query Frame = 1 
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  I   S  ++  +Q++LMG+VE  R      P  + ++                  + YPGG F DPL LA          D E    LKV EIK+ RLAM +M  F+ +A
Sbjct:   41 LTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGG--GPLGEGLD------------------KIYPGGAF-DPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFVQA 203
[Close]
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 62/193 (32.12%), Postives = 83/193 (43.01%), Query Frame = 1 
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L+G  PGDYG+D  GL  DP      RE E+IH RWAM   +G    +  A +G+      WF+AG+            +P  +   S  ++   Q++LMG VE  R                     A        +  YPGG F DPL LA          D E    LKV E+K+ RLAM +M  F+ +A
Sbjct:   69 LSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYR--------------------VAGGPLGEVEDPIYPGGSF-DPLGLAD---------DPEAFAELKVKELKNGRLAMFSMFGFFVQA 231
The following BLAST results are available for this feature:
BLAST of CX296731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB28_PEA6.041e-1432.64Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_SOYBN6.041e-1432.64Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB22_PEA6.041e-1432.64Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB22_ARATH7.890e-1432.64Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SINAL7.890e-1432.64Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_LEMGI7.890e-1432.64Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_ARATH7.890e-1432.64Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB2_CHLRE1.758e-1331.09Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB25_SOLLC1.758e-1332.64Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB23_POLMU1.758e-1332.12Chlorophyll a-b binding protein type 1 member F3, ... [more]

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Properties
Property NameValue
Genbank descriptionC05802B09SK FerrChloL1 Citrus clementina cDNA clone C05802B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296731 ID=CX296731; Name=CX296731; organism=Citrus clementina; type=EST; length=689bp
CGAGGGCTCGCTGGCTCTCTCCCAGGTGACTACGGATTCGACCCACTTGG
GCTTGGAAAGGACCCAGCATTCCTGAAATGGTACAGAGAAGCAGAACTGA
TCCACGGACGATGGGCAATGGCTGCAGTTGTTGGGATATTCGTCGGACAG
GCGTGGAGTGGGATTCCATGGTTCGAGGCTGGAGCAGATCCTGGAGCCAT
AGCACCCTTCTCCTTCGGCTCACTCCTGGGAACCCAGCTTCTCCTTATGG
GTTGGGTTGAGAGCAAGCGGTGGGTTGATTTTTTCAATCCTGAATCTCAA
TCAGTTGAATGGGCAACACCTTGGTCAAGAACTGCTGAAAACTTTGCCAA
TGCGACTGGTGAACAAGGCTACCCTGGTGGAAAGTTTTTTGATCCCTTAT
GTTTGGCTGGAACAATTAAGGATGGTGTCTACATTCCTGACACTGAGAAG
CTTGACAGGCTCAAAGTTGCTGAGATTAAACATGCTAGGCTTGCTATGGT
GGCCATGTTGATTTTCTACTTTGAAGCTGGCCAAGGCAAGACGCCACTTG
GGGCTCTTGGTTTGTAAAACATGCTTATGTAGATAACTCACTGATTGGTG
TTAAAGCGTAATCAATCGGATGTATACCTCGTGCCGAATTCGGCACGAGG
CCTCGTGCCGAATTCGGCACGAAGGGGGGGCCCGGTACC
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