CX296731

Overview
NameCX296731
Unique NameCX296731
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9765 contig Ccv1_Contig9765:296..984. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 64/193 (33.16%), Postives = 81/193 (41.97%), Query Frame = 1
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  I   S  ++   Q++LMG VE  R      P  + V                  +  YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+ +A
Sbjct:   65 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG--GPLGEVV------------------DPLYPGGS-FDPLGLA---------DDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 227          
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 62/193 (32.12%), Postives = 79/193 (40.93%), Query Frame = 1
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP      RE E+IHGRWAM   +G          G  +    WF+ G+            +P  +   S  ++   Q++LMG VE                      R A        +  YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+ +A
Sbjct:   68 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEG--------------------YRVAGGPLGEVVDPLYPGGS-FDPLGLA---------DDAEAFAELKVKEIKNGRLAMFSMFGFFVQA 230          
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 63/193 (32.64%), Postives = 83/193 (43.01%), Query Frame = 1
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  I   S  ++   Q++LMG+VE  R      P  + ++                  + YPGG F DPL LA          D E    LKV EIK+ RLAM +M  F+ +A
Sbjct:   69 LTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGG--GPLGEGLD------------------KIYPGGAF-DPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFVQA 231          
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 61/193 (31.61%), Postives = 83/193 (43.01%), Query Frame = 1
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AGA            +P  +   S  ++   Q++LMG+VE  R      P  + +                  ++ YPGG  FDPL LA          D +    LKV E+K+ RLAM +M  F+ +A
Sbjct:   67 LTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGG--GPLGEGL------------------DKVYPGGA-FDPLGLA---------DDPDTFAELKVKELKNGRLAMFSMFGFFVQA 229          
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 61/193 (31.61%), Postives = 83/193 (43.01%), Query Frame = 1
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AGA            +P  +   S  ++   Q++LMG+VE  R      P  + +                  ++ YPGG  FDPL LA          D +    LKV E+K+ RLAM +M  F+ +A
Sbjct:   67 LTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGG--GPLGEGL------------------DKVYPGGA-FDPLGLA---------DDPDTFAELKVKELKNGRLAMFSMFGFFVQA 229          
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 64/193 (33.16%), Postives = 81/193 (41.97%), Query Frame = 1
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  I   S  ++   Q++LMG VE  R      P  + V                  +  YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+ +A
Sbjct:   69 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG--GPLGEVV------------------DPLYPGGA-FDPLGLA---------DDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 231          
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 62/193 (32.12%), Postives = 83/193 (43.01%), Query Frame = 1
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  I   S  ++  TQ++LMG+VE  R      P  + ++                    YPGG F DPL LA          D +    LKV E+K+ RLAM +M  F+ +A
Sbjct:   69 LTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGG--GPLGEGLDPL------------------YPGGAF-DPLGLAD---------DPDSFAELKVKELKNGRLAMFSMFGFFVQA 231          
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.998e-13
Identity = 64/193 (33.16%), Postives = 82/193 (42.49%), Query Frame = 1
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G    +  A +G+      WF+AGA            +P  +   S  ++   Q++LMG VE  R                     A        +  YPGG F DPL LA          D E    LKV EIK+ RLAM +M  F+ +A
Sbjct:   78 LTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYR--------------------IAGGPLGEVTDPIYPGGSF-DPLGLA---------EDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 240          
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.916e-13
Identity = 63/193 (32.64%), Postives = 81/193 (41.97%), Query Frame = 1
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGAD------------PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G    +  A +G+      WF+AGA             P  I   S  ++   Q++LMG +E  R                     A        +  YPGG F DPL LA          D +    LKV EIK+ RLAM +M  F+ +A
Sbjct:   82 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYR--------------------VAGGPLGEVTDPIYPGGNF-DPLGLAD---------DPDAFAELKVKEIKNGRLAMFSMFGFFVQA 244          
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.916e-13
Identity = 63/193 (32.64%), Postives = 81/193 (41.97%), Query Frame = 1
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  I   S  ++   Q++LMG VE  R      P  + V                  +  YPGG  FDPL LA          D E    LKV E+K+ RLAM +M  F+ +A
Sbjct:   66 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVV------------------DPLYPGGS-FDPLGLA---------DDPEAFAELKVKELKNGRLAMFSMFGFFVQA 228          
The following BLAST results are available for this feature:
BLAST of CX296731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB22_ORYSJ1.758e-1333.16Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_HORVU1.758e-1332.12Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB26_PETSP2.296e-1332.64Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB23_ORYSJ2.296e-1331.61Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI2.296e-1331.61Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_ORYSJ2.296e-1333.16Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB215_PEA2.296e-1332.12Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB2B_PINSY2.998e-1333.16Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2A_PINSY3.916e-1332.64Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB21_MAIZE3.916e-1332.64Chlorophyll a-b binding protein 1, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC05802B09SK FerrChloL1 Citrus clementina cDNA clone C05802B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296731 ID=CX296731; Name=CX296731; organism=Citrus clementina; type=EST; length=689bp
CGAGGGCTCGCTGGCTCTCTCCCAGGTGACTACGGATTCGACCCACTTGG
GCTTGGAAAGGACCCAGCATTCCTGAAATGGTACAGAGAAGCAGAACTGA
TCCACGGACGATGGGCAATGGCTGCAGTTGTTGGGATATTCGTCGGACAG
GCGTGGAGTGGGATTCCATGGTTCGAGGCTGGAGCAGATCCTGGAGCCAT
AGCACCCTTCTCCTTCGGCTCACTCCTGGGAACCCAGCTTCTCCTTATGG
GTTGGGTTGAGAGCAAGCGGTGGGTTGATTTTTTCAATCCTGAATCTCAA
TCAGTTGAATGGGCAACACCTTGGTCAAGAACTGCTGAAAACTTTGCCAA
TGCGACTGGTGAACAAGGCTACCCTGGTGGAAAGTTTTTTGATCCCTTAT
GTTTGGCTGGAACAATTAAGGATGGTGTCTACATTCCTGACACTGAGAAG
CTTGACAGGCTCAAAGTTGCTGAGATTAAACATGCTAGGCTTGCTATGGT
GGCCATGTTGATTTTCTACTTTGAAGCTGGCCAAGGCAAGACGCCACTTG
GGGCTCTTGGTTTGTAAAACATGCTTATGTAGATAACTCACTGATTGGTG
TTAAAGCGTAATCAATCGGATGTATACCTCGTGCCGAATTCGGCACGAGG
CCTCGTGCCGAATTCGGCACGAAGGGGGGGCCCGGTACC
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