CX296731

Overview
NameCX296731
Unique NameCX296731
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9765 contig Ccv1_Contig9765:296..984. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.916e-13
Identity = 59/184 (32.07%), Postives = 89/184 (48.37%), Query Frame = 1
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG---ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTP 546
            L GSL GD GFDPL L +DP  L+W+ +A++++GRWAM  V G+ + +  +      A      PG    F+  S      +   +VE +RW D  NP S + +         ++++    E GYP G+ F+PL  A        + + EK       E+ + RLAM+A L F  +    GK P
Sbjct:   46 LDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVHMSSTYVEIRRWQDIKNPGSVNQD------PIFKSYSLPPHECGYP-GRVFNPLNFAP-------LENKEK-------ELANGRLAMLAFLGFLVQHNVHGKGP 208          
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13
Identity = 63/193 (32.64%), Postives = 81/193 (41.97%), Query Frame = 1
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE  R      P  + V                  +  YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+ +A
Sbjct:   71 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLGEVV------------------DPLYPGGS-FDPLGLA---------DDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 233          
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13
Identity = 62/193 (32.12%), Postives = 83/193 (43.01%), Query Frame = 1
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG+VE  R      P  + ++                  + YPGG F DPL LA          D E    LKV EIK+ RLAM +M  F+ +A
Sbjct:   69 LTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGG--GPLGEGLD------------------KIYPGGAF-DPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFVQA 231          
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13
Identity = 62/193 (32.12%), Postives = 79/193 (40.93%), Query Frame = 1
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE                      R A        +  YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+ +A
Sbjct:   69 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG--------------------YRVAGGPLGEVVDPLYPGGS-FDPLGLA---------EDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 231          
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13
Identity = 61/193 (31.61%), Postives = 79/193 (40.93%), Query Frame = 1
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE  R                     A        +  YPGG F DPL LA          D E    LKV E+K+ RLAM +M  F+ +A
Sbjct:   59 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR--------------------IAGGPLGEVTDPIYPGGSF-DPLGLAD---------DPEAFAELKVKELKNGRLAMFSMFGFFVQA 221          
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 65/193 (33.68%), Postives = 82/193 (42.49%), Query Frame = 1
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G   GDYG+D  GL  DP      RE E+IH RWAM   +G    +  A SG+      WF+AGA            +P  +   S  ++   Q++LMG VE  R                     A        +  YPGG F DPL LA         PDT     LKV EIK+ RLAM +M  F+ +A
Sbjct:   72 LNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR--------------------VAGGPLGEVTDPIYPGGSF-DPLGLADD-------PDT--FAELKVKEIKNGRLAMFSMFGFFVQA 234          
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 63/193 (32.64%), Postives = 81/193 (41.97%), Query Frame = 1
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE  R      P  + V                  +  YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+ +A
Sbjct:   71 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVV------------------DPLYPGGS-FDPLGLA---------DDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 233          
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 63/193 (32.64%), Postives = 81/193 (41.97%), Query Frame = 1
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE  R      P  + V                  +  YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+ +A
Sbjct:   69 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVV------------------DPLYPGGS-FDPLGLA---------EDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 231          
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 62/193 (32.12%), Postives = 82/193 (42.49%), Query Frame = 1
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G    +  A +G+      WF+AG+            +P  +   S  ++   Q++LMG +E  R                     A        +  YPGG F DPL LA          D E    LKV EIK+ RLAM +M  F+ +A
Sbjct:   71 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYR--------------------VAGGPLGEVTDPLYPGGSF-DPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFVQA 233          
BLAST of CX296731 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 62/193 (32.12%), Postives = 79/193 (40.93%), Query Frame = 1
Query:    7 LAGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 528
            L G  PGDYG+D  GL  DP      RE E+IH RWAM   +G          G  +    WF+AG+            +P  +   S  ++   Q++LMG VE                      R A        +  YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+ +A
Sbjct:   70 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG--------------------YRVAGEPLGEVVDPLYPGGS-FDPLGLA---------EDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 232          
The following BLAST results are available for this feature:
BLAST of CX296731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB120_HORVU3.916e-1332.07Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB2A_SPIOL5.114e-1332.64Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_SOLLC5.114e-1332.12Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB22_TOBAC5.114e-1332.12Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB21_CUCSA5.114e-1331.61Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_PHYPA6.679e-1333.68Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2G_SOLLC6.679e-1332.64Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB2B_SOLLC6.679e-1332.64Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB27_TOBAC6.679e-1332.12Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_NICPL6.679e-1332.12Chlorophyll a-b binding protein E, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC05802B09SK FerrChloL1 Citrus clementina cDNA clone C05802B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296731 ID=CX296731; Name=CX296731; organism=Citrus clementina; type=EST; length=689bp
CGAGGGCTCGCTGGCTCTCTCCCAGGTGACTACGGATTCGACCCACTTGG
GCTTGGAAAGGACCCAGCATTCCTGAAATGGTACAGAGAAGCAGAACTGA
TCCACGGACGATGGGCAATGGCTGCAGTTGTTGGGATATTCGTCGGACAG
GCGTGGAGTGGGATTCCATGGTTCGAGGCTGGAGCAGATCCTGGAGCCAT
AGCACCCTTCTCCTTCGGCTCACTCCTGGGAACCCAGCTTCTCCTTATGG
GTTGGGTTGAGAGCAAGCGGTGGGTTGATTTTTTCAATCCTGAATCTCAA
TCAGTTGAATGGGCAACACCTTGGTCAAGAACTGCTGAAAACTTTGCCAA
TGCGACTGGTGAACAAGGCTACCCTGGTGGAAAGTTTTTTGATCCCTTAT
GTTTGGCTGGAACAATTAAGGATGGTGTCTACATTCCTGACACTGAGAAG
CTTGACAGGCTCAAAGTTGCTGAGATTAAACATGCTAGGCTTGCTATGGT
GGCCATGTTGATTTTCTACTTTGAAGCTGGCCAAGGCAAGACGCCACTTG
GGGCTCTTGGTTTGTAAAACATGCTTATGTAGATAACTCACTGATTGGTG
TTAAAGCGTAATCAATCGGATGTATACCTCGTGCCGAATTCGGCACGAGG
CCTCGTGCCGAATTCGGCACGAAGGGGGGGCCCGGTACC
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