CX296733

Overview
NameCX296733
Unique NameCX296733
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length405
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296733 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.448e-11
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = -3 
Query:  287 GNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNF 403
            GNM+V+EQENVKRVQLADKY+SEAALG+AN DAI+ G F
Sbjct:  397 GNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435
[Close]
BLAST of CX296733 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 65.4698 bits (158), Expect = 9.910e-11
Identity = 30/40 (75.00%), Postives = 38/40 (95.00%), Query Frame = -3 
Query:  284 GNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 403
            G+M+V EQENVKRVQLADKYL+EAALGEAN DA+++G+F+
Sbjct:  393 GHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432
The following BLAST results are available for this feature:
BLAST of CX296733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RCA2_LARTR4.448e-1179.49Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE9.910e-1175.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionC05802B11SK FerrChloL1 Citrus clementina cDNA clone C05802B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296733 ID=CX296733; Name=CX296733; organism=Citrus clementina; type=EST; length=405bp
AATTCGGCACGAGGCAAAATTAGATCCTTCTTTCTAATTAACAAAGAAAT
GAAAATGCAACAATATTATTTGAATATCTCACATCCTAAGCAAAGTGCGA
CACTTCTCAACCCTTAAAAACAAGGCCTAAAGCGAGTATTGGCAGCTTCC
ATCATCACTTCTTGAAGTTGGATCAAAGTTTTCTGCAGTAGGATCAGTAC
ATCCTTCAGGAACTGGAACATTCATTTGCTGGGCTGCTTTGCCTCCCATC
AAGGCCTCTTAGCTAGGATCAAGGGGGCTAACCATAGAAATTTCCACTCT
GAATAGCATCTGCATTAGCTTCACCAAGAGCGGCCTCACTCAAATACTTG
TCAGCCAACTGAACTCTCTTCACATTCTCTTGCTCTTGCACAATCATGTT
TCCGT
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