CX296740

Overview
NameCX296740
Unique NameCX296740
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig928 contig Ccv1_Contig928:282..1039. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_NECH7 (40S ribosomal protein S1 OS=Nectria haematococca (strain 77-13-4 / FGSC 9596 / MPVI) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 1.843e-53
Identity = 102/161 (63.35%), Postives = 125/161 (77.64%), Query Frame = -3 
Query:  222 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKMERPADEPIPE 701
            + CLTNF G+DFT+DKLRSLVRKW TLIEA V VKTTD+Y +R+F I FTKR PNQ+K+T YA +SQIR IRRKM +I+  +A+SC L  L  K I E+IGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG LM +HG+  ++D G K+ER   E + E
Sbjct:   94 KNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLIRLFAIAFTKRRPNQIKKTTYAASSQIRAIRRKMTDIIQREASSCTLTQLTSKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALMALHGESGTDDQGQKVEREFKERVLE 254

HSP 2 Score: 27.7202 bits (60), Expect = 1.843e-53
Identity = 10/15 (66.67%), Postives = 14/15 (93.33%), Query Frame = -1 
Query:  695 YRKIRLRAEDVQGKN 739
            +RK+RLR ++VQGKN
Sbjct:   81 FRKVRLRVDEVQGKN 95
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_TALSN (40S ribosomal protein S1 OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) GN=rps1 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.403e-53
Identity = 102/162 (62.96%), Postives = 127/162 (78.40%), Query Frame = -3 
Query:  219 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 701
            + CLTNF G+DFT+DKLRSLVRKW +LIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+KM EI+  +AASC L  L  K I E+IGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:   94 KNCLTNFHGLDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIIQREAASCTLSQLTTKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALLNLHGESTTDDQGHKVEREFKETVLES 255

HSP 2 Score: 26.5646 bits (57), Expect = 2.403e-53
Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = -1 
Query:  695 YRKIRLRAEDVQGKN 739
            +RK++LR ++VQGKN
Sbjct:   81 FRKVKLRVDEVQGKN 95
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_CHAGB (40S ribosomal protein S1 OS=Chaetomium globosum GN=RPS1 PE=3 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 3.132e-53
Identity = 105/162 (64.81%), Postives = 122/162 (75.31%), Query Frame = -3 
Query:  219 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED-VGVKMERPADEPIPEA 701
            + CLTNF G+DFT+DKLRSLVRKW TLIEA V V TTD+Y LR+F I FTKR PNQ+K+T YA  SQIR IRRKM EI+  +A+SC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK PKFDLG LM +HG+ S D  G K+ER   E + E+
Sbjct:   94 KNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVMTTDHYLLRLFAIAFTKRRPNQIKKTTYAATSQIRAIRRKMTEIIQREASSCTLTQLTSKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKQPKFDLGALMTLHGESSTDEQGQKVEREFREQVLES 255

HSP 2 Score: 26.9498 bits (58), Expect = 3.132e-53
Identity = 10/15 (66.67%), Postives = 14/15 (93.33%), Query Frame = -1 
Query:  695 YRKIRLRAEDVQGKN 739
            +RKI+LR ++VQGKN
Sbjct:   81 FRKIKLRVDEVQGKN 95
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_PENCW (40S ribosomal protein S1 OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=rps1 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.322e-53
Identity = 100/162 (61.73%), Postives = 127/162 (78.40%), Query Frame = -3 
Query:  219 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 701
            + CLTNF G+DFTTDKLRSLVRKW +LIEA + VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+KM EI+  +A++C L  L  K I E+IGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:   94 KNCLTNFHGLDFTTDKLRSLVRKWQSLIEANITVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIIQREASTCTLSQLTHKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESATDDKGQKVEREFKETVLES 255

HSP 2 Score: 26.1794 bits (56), Expect = 5.322e-53
Identity = 8/15 (53.33%), Postives = 14/15 (93.33%), Query Frame = -1 
Query:  695 YRKIRLRAEDVQGKN 739
            +RK++LR +++QGKN
Sbjct:   81 FRKVKLRVDEIQGKN 95
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_PENMQ (40S ribosomal protein S1 OS=Penicillium marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) GN=rps1 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.322e-53
Identity = 102/162 (62.96%), Postives = 126/162 (77.78%), Query Frame = -3 
Query:  219 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 701
            + CLTNF G+DFT+DKLRSLVRKW +LIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA +SQIR IR+KM EI+  +AASC L  L  K I E+IGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:   94 KNCLTNFHGLDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAGSSQIRAIRKKMTEIIQREAASCTLSQLTTKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALLNLHGESTTDDQGHKVEREFKETVLES 255

HSP 2 Score: 26.5646 bits (57), Expect = 5.322e-53
Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = -1 
Query:  695 YRKIRLRAEDVQGKN 739
            +RK++LR ++VQGKN
Sbjct:   81 FRKVKLRVDEVQGKN 95
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_NANOT (40S ribosomal protein S1 OS=Nannizzia otae (strain CBS 113480) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 9.045e-53
Identity = 103/162 (63.58%), Postives = 127/162 (78.40%), Query Frame = -3 
Query:  219 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 701
            + CLTNF G+DFT+DKLRSLVRKW TLIEA V VKTTD+Y +R+F I FTKR PNQ+K+T YAQ+SQIR IR+KM EI+  QA+SC L  L  K + E+IGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:   94 KNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLVRLFAIAFTKRRPNQIKKTTYAQSSQIRAIRKKMTEIIQRQASSCTLTQLT-KLVPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALLALHGEASTDDKGQKVEREFKEKVLES 254

HSP 2 Score: 26.5646 bits (57), Expect = 9.045e-53
Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = -1 
Query:  695 YRKIRLRAEDVQGKN 739
            +RK++LR ++VQGKN
Sbjct:   81 FRKVKLRVDEVQGKN 95
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_SCLS1 (40S ribosomal protein S1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=rps1 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.537e-52
Identity = 101/161 (62.73%), Postives = 124/161 (77.02%), Query Frame = -3 
Query:  222 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED-VGVKMERPADEPIPE 701
            + CLTNF G+DFT+DKLRSLVRKW +LIEA + VKTTD+Y LR+F I FTKR PNQ+K+T YA +SQIR IR+KM EI+  +A++C L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+ + D  G K+ER   E + E
Sbjct:   94 KNCLTNFHGLDFTSDKLRSLVRKWQSLIEANITVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAASSQIRAIRKKMTEIIQREASTCTLTQLTAKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESNTDEQGQKVEREFKEKVLE 254

HSP 2 Score: 26.5646 bits (57), Expect = 1.537e-52
Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = -1 
Query:  695 YRKIRLRAEDVQGKN 739
            +RK++LR ++VQGKN
Sbjct:   81 FRKVKLRVDEVQGKN 95
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_BOTFB (40S ribosomal protein S1 OS=Botryotinia fuckeliana (strain B05.10) GN=rps1 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.537e-52
Identity = 101/161 (62.73%), Postives = 124/161 (77.02%), Query Frame = -3 
Query:  222 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED-VGVKMERPADEPIPE 701
            + CLTNF G+DFT+DKLRSLVRKW +LIEA + VKTTD+Y LR+F I FTKR PNQ+K+T YA +SQIR IR+KM EI+  +A++C L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+ + D  G K+ER   E + E
Sbjct:   94 KNCLTNFHGLDFTSDKLRSLVRKWQSLIEANITVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAASSQIRAIRKKMTEIIQREASTCTLTQLTAKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESNTDEQGQKVEREFKEKVLE 254

HSP 2 Score: 26.5646 bits (57), Expect = 1.537e-52
Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = -1 
Query:  695 YRKIRLRAEDVQGKN 739
            +RK++LR ++VQGKN
Sbjct:   81 FRKVKLRVDEVQGKN 95
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_MAGGR (40S ribosomal protein S1 OS=Magnaporthe grisea GN=RPS1 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.537e-52
Identity = 102/161 (63.35%), Postives = 124/161 (77.02%), Query Frame = -3 
Query:  222 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED-VGVKMERPADEPIPE 701
            + CLTNF G+DFT+DKLRSLVRKW +LIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA +SQIR IRRKM EI+  +A++C L+ L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK PKFDLG L+ +HG+ + D  G K+ER   E + E
Sbjct:   94 KNCLTNFHGLDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAASSQIRAIRRKMTEIIQREASTCTLQQLTNKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKQPKFDLGGLLALHGESTTDEQGQKVEREFKERVLE 254

HSP 2 Score: 26.9498 bits (58), Expect = 1.537e-52
Identity = 10/15 (66.67%), Postives = 14/15 (93.33%), Query Frame = -1 
Query:  695 YRKIRLRAEDVQGKN 739
            +RKI+LR ++VQGKN
Sbjct:   81 FRKIKLRVDEVQGKN 95
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_PARBP (40S ribosomal protein S1 OS=Paracoccidioides brasiliensis (strain Pb03) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 3.700e-51
Identity = 103/162 (63.58%), Postives = 125/162 (77.16%), Query Frame = -3 
Query:  219 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 701
            + CLTNF G+DFT+DKLRSLVRKW TLIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YAQ+SQIR IR+KM EI+  +A +  L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:   94 KNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAQSSQIRAIRKKMVEIIQREAGTRSLAQLT-KLIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKETVLES 254

HSP 2 Score: 26.5646 bits (57), Expect = 3.700e-51
Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = -1 
Query:  695 YRKIRLRAEDVQGKN 739
            +RK++LR ++VQGKN
Sbjct:   81 FRKVKLRVDEVQGKN 95
The following BLAST results are available for this feature:
BLAST of CX296740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
RS3A_NECH71.843e-5363.3540S ribosomal protein S1 OS=Nectria haematococca (... [more]
RS3A_TALSN2.403e-5362.9640S ribosomal protein S1 OS=Talaromyces stipitatus... [more]
RS3A_CHAGB3.132e-5364.8140S ribosomal protein S1 OS=Chaetomium globosum GN... [more]
RS3A_PENCW5.322e-5361.7340S ribosomal protein S1 OS=Penicillium chrysogenu... [more]
RS3A_PENMQ5.322e-5362.9640S ribosomal protein S1 OS=Penicillium marneffei ... [more]
RS3A_NANOT9.045e-5363.5840S ribosomal protein S1 OS=Nannizzia otae (strain... [more]
RS3A_SCLS11.537e-5262.7340S ribosomal protein S1 OS=Sclerotinia sclerotior... [more]
RS3A_BOTFB1.537e-5262.7340S ribosomal protein S1 OS=Botryotinia fuckeliana... [more]
RS3A_MAGGR1.537e-5263.3540S ribosomal protein S1 OS=Magnaporthe grisea GN=... [more]
RS3A_PARBP3.700e-5163.5840S ribosomal protein S1 OS=Paracoccidioides brasi... [more]

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Properties
Property NameValue
Genbank descriptionC05802C06SK FerrChloL1 Citrus clementina cDNA clone C05802C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296740 ID=CX296740; Name=CX296740; organism=Citrus clementina; type=EST; length=757bp
CCGAATTCGGCACGAGGCTGGAATAAAGAATAAGGTAATCATGTTCATAC
CACAGAAACCGCTGCAGCCATCTCAAATATCAGCTAGAATAAAATATGTA
AACTCAAAACAAATTTGAGTTCATCACAAACAAAACTGCCCAAAAATTAC
TAGATCTGATTGGTTATAAAGACAAACTACAAAAATTTCTTTATTCAAGC
TCCAATCACTTCAGTTGGTGCTTCAGGAATGGGCTCATCAGCTGGCCTTT
CCATCTTTACACCAACATCCTCAGAGTAATCACCATGAACCTCCATCAAC
TTTCCAAGATCAAACTTAGGAGCTTTCAAGATCTTCACTTTGCGAATGAA
AACATTTTGTAAGGGGTATATGCTTAAGGTTGCCTTCTCAATCTCTCTTC
CAATTATTTCAGCAATGAACTTTTCGACCAAGCCCTTAAGATCACAGGAT
GCTGCCTGAGCAATCATGATCTCCCTCATCTTGCGGCGAATCTGTCTAAT
CTGGCTGGCCTGTGCGTAGCAAGTCCTCTTAACCTGATTTGGAAGTCTCT
TGGTGAATCCAATGCAGAACATCCTCAATGTGTAGTTATCAGTGGTCTTG
ACATCCACGTAAGCTTCAATCAACGTATGCCACTTCCTAACCAAGGACCT
CAGCTTGTCTGTAGTGAAATCCATGCCCCAGAAGTTTGTCAAACATTCTT
CCCTTGGACATCTTCAGCTCTTAGTCTGATCTTCCTGTAGCATGCTCTTC
TTCATAT
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