CX296740

Overview
NameCX296740
Unique NameCX296740
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig928 contig Ccv1_Contig928:282..1039. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_PARBD (40S ribosomal protein S1 OS=Paracoccidioides brasiliensis (strain Pb18) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.700e-51
Identity = 103/162 (63.58%), Postives = 125/162 (77.16%), Query Frame = -3
Query:  219 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 701
            + CLTNF G+DFT+DKLRSLVRKW TLIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YAQ+SQIR IR+KM EI+  +A +  L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:   94 KNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAQSSQIRAIRKKMVEIIQREAGTRSLAQLT-KLIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKETVLES 254          

HSP 2 Score: 26.5646 bits (57), Expect = 3.700e-51
Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK++LR ++VQGKN
Sbjct:   81 FRKVKLRVDEVQGKN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_PARBA (40S ribosomal protein S1 OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.700e-51
Identity = 103/162 (63.58%), Postives = 125/162 (77.16%), Query Frame = -3
Query:  219 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 701
            + CLTNF G+DFT+DKLRSLVRKW TLIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YAQ+SQIR IR+KM EI+  +A +  L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:   94 KNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAQSSQIRAIRKKMVEIIQREAGTRSLAQLT-KLIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKETVLES 254          

HSP 2 Score: 26.5646 bits (57), Expect = 3.700e-51
Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK++LR ++VQGKN
Sbjct:   81 FRKVKLRVDEVQGKN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_CRYNE (40S ribosomal protein S1 OS=Cryptococcus neoformans GN=RPS1 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 4.821e-51
Identity = 96/161 (59.63%), Postives = 123/161 (76.40%), Query Frame = -3
Query:  222 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-DVGVKMERPADEPIPE 701
            + CLT+F+GMDFTTDKLRS+VRKW +L+EA+VDVKTTD Y LR+F IGFTKR  NQVK+T YAQ+SQ+++IR KM EIM  +A   DLK LV+KF+ E IGREIEKA   IYPL NV++RK KI+K PK D+ KL+E HG+  + + G K+ +  +   PE
Sbjct:   94 KSCLTSFYGMDFTTDKLRSIVRKWQSLVEAHVDVKTTDGYVLRLFAIGFTKRQSNQVKKTTYAQSSQLKEIRAKMVEIMRREAEGSDLKELVQKFVPESIGREIEKAAKGIYPLHNVYVRKAKIVKTPKIDMSKLLESHGEAMDANTGSKVVKSGEFVEPE 254          

HSP 2 Score: 25.409 bits (54), Expect = 4.821e-51
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RKI+LR EDV GK+
Sbjct:   81 FRKIKLRVEDVAGKS 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_AJEDS (40S ribosomal protein S1 OS=Ajellomyces dermatitidis (strain SLH14081) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.815e-50
Identity = 101/162 (62.35%), Postives = 126/162 (77.78%), Query Frame = -3
Query:  219 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 701
            + CLTNF G+DFT+DKLRSLVRKW TLIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+K+ EI+  +A++  L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:   94 KNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLT-KLIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254          

HSP 2 Score: 26.5646 bits (57), Expect = 1.815e-50
Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK++LR ++VQGKN
Sbjct:   81 FRKVKLRVDEVQGKN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_AJEDR (40S ribosomal protein S1 OS=Ajellomyces dermatitidis (strain ER-3) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.815e-50
Identity = 101/162 (62.35%), Postives = 126/162 (77.78%), Query Frame = -3
Query:  219 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 701
            + CLTNF G+DFT+DKLRSLVRKW TLIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+K+ EI+  +A++  L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:   94 KNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLT-KLIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254          

HSP 2 Score: 26.5646 bits (57), Expect = 1.815e-50
Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK++LR ++VQGKN
Sbjct:   81 FRKVKLRVDEVQGKN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_AJECN (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.815e-50
Identity = 101/162 (62.35%), Postives = 126/162 (77.78%), Query Frame = -3
Query:  219 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 701
            + CLTNF G+DFT+DKLRSLVRKW TLIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+K+ EI+  +A+S  L  L  K I E+IGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:   94 KNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASSRTLAQLT-KLIPEVIGREIEKSTHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254          

HSP 2 Score: 26.5646 bits (57), Expect = 1.815e-50
Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK++LR ++VQGKN
Sbjct:   81 FRKVKLRVDEVQGKN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_AJECG (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.019e-50
Identity = 100/162 (61.73%), Postives = 126/162 (77.78%), Query Frame = -3
Query:  219 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 701
            + CLTNF G+DFT+DKLRSLVRKW TLIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+K+ EI+  +A++  L  L  K I E+IGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:   94 KNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLT-KLIPEVIGREIEKSTHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254          

HSP 2 Score: 26.5646 bits (57), Expect = 4.019e-50
Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK++LR ++VQGKN
Sbjct:   81 FRKVKLRVDEVQGKN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_AJECH (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain H143) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 8.900e-50
Identity = 99/162 (61.11%), Postives = 126/162 (77.78%), Query Frame = -3
Query:  219 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 701
            + CLTNF G+DFT+DKLRSLVRKW TLIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+K+ EI+  +A++  L  L  K I E+IGREI+K+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:   94 KNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLT-KLIPEVIGREIDKSTHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254          

HSP 2 Score: 26.5646 bits (57), Expect = 8.900e-50
Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK++LR ++VQGKN
Sbjct:   81 FRKVKLRVDEVQGKN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_IXOSC (40S ribosomal protein S3a OS=Ixodes scapularis PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.159e-49
Identity = 93/163 (57.06%), Postives = 121/163 (74.23%), Query Frame = -3
Query:  243 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-------------DVGVKMERP 692
            LTNF GMD TTDKLRS+V+KW TLIEA VDV+TTD Y LRMFCIGFTK+  NQ+K+TCYAQ +Q+R IR+KM E+M+ + +S +LK +V K I   IG++IEK+   IYPL +V IRKVK+LK PKF+LGKL+E+HG+ +              + GVK++RP
Sbjct:   97 LTNFHGMDLTTDKLRSMVKKWQTLIEATVDVRTTDGYLLRMFCIGFTKKCANQLKKTCYAQHNQVRLIRKKMTEMMVVEVSSSNLKDVVNKLIPGSIGKDIEKSCQHIYPLHDVLIRKVKVLKKPKFELGKLLELHGEGTSKGGAASTAAVAKGEEGVKVDRP 259          

HSP 2 Score: 28.1054 bits (61), Expect = 1.159e-49
Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            YRK RL AE+VQG+NV
Sbjct:   81 YRKFRLIAEEVQGRNV 96          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_MALGO (40S ribosomal protein S1 OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.790e-49
Identity = 100/183 (54.64%), Postives = 134/183 (73.22%), Query Frame = -3
Query:  219 KKSMLQEDQTKS*RCPREECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS----EDVGVKMER-PADEPIPEA 752
            +K  L+ D+ +        CLTNF+GM FT+DKLRSLVRKW +LIEA+ D++TTD Y LR+F IGFT+R  NQVK+T YA++SQI  IR+KM E++  +++SCDL+  V K I E++GREIEK+T  IYPL++VFI KVK+LK PKFD+ KL E+HG  S    EDVG K++     EP+P+A
Sbjct:   81 RKFQLRVDEVQG-----RNCLTNFYGMSFTSDKLRSLVRKWQSLIEAHQDIRTTDGYLLRVFAIGFTRRRANQVKKTTYAKSSQIHAIRKKMFEVIQRESSSCDLREFVAKLIPEVMGREIEKSTQGIYPLKDVFIHKVKVLKRPKFDVNKLYELHGGASVVGAEDVGTKIKSGEFKEPVPQA 258          
The following BLAST results are available for this feature:
BLAST of CX296740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
RS3A_PARBD3.700e-5163.5840S ribosomal protein S1 OS=Paracoccidioides brasi... [more]
RS3A_PARBA3.700e-5163.5840S ribosomal protein S1 OS=Paracoccidioides brasi... [more]
RS3A_CRYNE4.821e-5159.6340S ribosomal protein S1 OS=Cryptococcus neoforman... [more]
RS3A_AJEDS1.815e-5062.3540S ribosomal protein S1 OS=Ajellomyces dermatitid... [more]
RS3A_AJEDR1.815e-5062.3540S ribosomal protein S1 OS=Ajellomyces dermatitid... [more]
RS3A_AJECN1.815e-5062.3540S ribosomal protein S1 OS=Ajellomyces capsulata ... [more]
RS3A_AJECG4.019e-5061.7340S ribosomal protein S1 OS=Ajellomyces capsulata ... [more]
RS3A_AJECH8.900e-5061.1140S ribosomal protein S1 OS=Ajellomyces capsulata ... [more]
RS3A_IXOSC1.159e-4957.0640S ribosomal protein S3a OS=Ixodes scapularis PE=... [more]
RS3A_MALGO1.790e-4954.6440S ribosomal protein S1 OS=Malassezia globosa (st... [more]

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Properties
Property NameValue
Genbank descriptionC05802C06SK FerrChloL1 Citrus clementina cDNA clone C05802C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296740 ID=CX296740; Name=CX296740; organism=Citrus clementina; type=EST; length=757bp
CCGAATTCGGCACGAGGCTGGAATAAAGAATAAGGTAATCATGTTCATAC
CACAGAAACCGCTGCAGCCATCTCAAATATCAGCTAGAATAAAATATGTA
AACTCAAAACAAATTTGAGTTCATCACAAACAAAACTGCCCAAAAATTAC
TAGATCTGATTGGTTATAAAGACAAACTACAAAAATTTCTTTATTCAAGC
TCCAATCACTTCAGTTGGTGCTTCAGGAATGGGCTCATCAGCTGGCCTTT
CCATCTTTACACCAACATCCTCAGAGTAATCACCATGAACCTCCATCAAC
TTTCCAAGATCAAACTTAGGAGCTTTCAAGATCTTCACTTTGCGAATGAA
AACATTTTGTAAGGGGTATATGCTTAAGGTTGCCTTCTCAATCTCTCTTC
CAATTATTTCAGCAATGAACTTTTCGACCAAGCCCTTAAGATCACAGGAT
GCTGCCTGAGCAATCATGATCTCCCTCATCTTGCGGCGAATCTGTCTAAT
CTGGCTGGCCTGTGCGTAGCAAGTCCTCTTAACCTGATTTGGAAGTCTCT
TGGTGAATCCAATGCAGAACATCCTCAATGTGTAGTTATCAGTGGTCTTG
ACATCCACGTAAGCTTCAATCAACGTATGCCACTTCCTAACCAAGGACCT
CAGCTTGTCTGTAGTGAAATCCATGCCCCAGAAGTTTGTCAAACATTCTT
CCCTTGGACATCTTCAGCTCTTAGTCTGATCTTCCTGTAGCATGCTCTTC
TTCATAT
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