CX296740

Overview
NameCX296740
Unique NameCX296740
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig928 contig Ccv1_Contig928:282..1039. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_TETNG (40S ribosomal protein S3a OS=Tetraodon nigroviridis GN=rps3a PE=3 SV=3)

HSP 1 Score: 190.66 bits (483), Expect = 1.970e-49
Identity = 95/172 (55.23%), Postives = 125/172 (72.67%), Query Frame = -3
Query:  219 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YSEDVGVKMERP--ADEPIPEA 701
            + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTKR  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+           +D G K+ER    + PI E+
Sbjct:   94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKRRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGTAAKATGDDTGAKVERADGYEPPIQES 265          

HSP 2 Score: 25.0238 bits (53), Expect = 1.970e-49
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK +L  EDVQGKN
Sbjct:   81 FRKFKLITEDVQGKN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_MACFA (40S ribosomal protein S3a OS=Macaca fascicularis GN=RPS3A PE=2 SV=3)

HSP 1 Score: 190.66 bits (483), Expect = 1.970e-49
Identity = 92/159 (57.86%), Postives = 121/159 (76.10%), Query Frame = -3
Query:  246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKMER 701
            + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S       ++ G K+ER
Sbjct:   94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 252          

HSP 2 Score: 25.0238 bits (53), Expect = 1.970e-49
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK +L  EDVQGKN
Sbjct:   81 FRKFKLITEDVQGKN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_HUMAN (40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 1.970e-49
Identity = 92/159 (57.86%), Postives = 121/159 (76.10%), Query Frame = -3
Query:  246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKMER 701
            + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S       ++ G K+ER
Sbjct:   94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 252          

HSP 2 Score: 25.0238 bits (53), Expect = 1.970e-49
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK +L  EDVQGKN
Sbjct:   81 FRKFKLITEDVQGKN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_BOVIN (40S ribosomal protein S3a OS=Bos taurus GN=RPS3A PE=2 SV=3)

HSP 1 Score: 190.66 bits (483), Expect = 1.970e-49
Identity = 92/159 (57.86%), Postives = 121/159 (76.10%), Query Frame = -3
Query:  246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKMER 701
            + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S       ++ G K+ER
Sbjct:   94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 252          

HSP 2 Score: 25.0238 bits (53), Expect = 1.970e-49
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK +L  EDVQGKN
Sbjct:   81 FRKFKLITEDVQGKN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_FELCA (40S ribosomal protein S3a (Fragment) OS=Felis catus GN=RPS3A PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 1.970e-49
Identity = 92/159 (57.86%), Postives = 121/159 (76.10%), Query Frame = -3
Query:  246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKMER 701
            + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S       ++ G K+ER
Sbjct:   90 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 248          

HSP 2 Score: 25.0238 bits (53), Expect = 1.970e-49
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK +L  EDVQGKN
Sbjct:   77 FRKFKLITEDVQGKN 91          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_YARLI (40S ribosomal protein S1 OS=Yarrowia lipolytica GN=RPS1 PE=3 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 2.338e-49
Identity = 102/178 (57.30%), Postives = 130/178 (73.03%), Query Frame = -3
Query:  219 KKSMLQEDQTKS*RCPREECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEA 752
            KK  L+ D+ +      +  LTNF G DFT+DKLRSLVRKW TLIEA V VKT+D+Y LR+F IGFTKR  NQVK+T YAQ SQI QIR+KM +I++ +A++  L  L  K I E+IGREIEKAT +IYPLQNV+IRKVK+LK PKFDLG L+ +HG  ++D G K+ R   + + E+
Sbjct:   82 KKVKLRVDEVQG-----KNLLTNFHGFDFTSDKLRSLVRKWQTLIEANVTVKTSDDYFLRLFVIGFTKRQANQVKKTTYAQTSQINQIRKKMTDIVVREASNVTLAQLTAKLIPEVIGREIEKATQNIYPLQNVYIRKVKLLKQPKFDLGALLALHGGATDDNGKKVNREFKDVVLES 254          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_NEMVE (40S ribosomal protein S3a OS=Nematostella vectensis GN=v1g242621 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.568e-49
Identity = 96/163 (58.90%), Postives = 123/163 (75.46%), Query Frame = -3
Query:  231 CLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS--------EDVGVKMERPADEP 695
            CLTNF GM+ TTDKLRSLV+KW TLIEA VDVKTTD Y LRMFCIGFTKR  NQ+K+T YA+ +QI+ IR+KM +I+  + ++ DLK +V K I + IG++IEK+  SIYPL +V IRKVK+LK PKFD+GKLME+HG+ S        ++ G K++R   EP
Sbjct:   95 CLTNFHGMNMTTDKLRSLVKKWQTLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVSTNDLKEVVNKLIPDSIGKDIEKSCQSIYPLHDVHIRKVKVLKKPKFDIGKLMEMHGEASSHATTTTTDETGTKIDREGFEP 257          

HSP 2 Score: 23.0978 bits (48), Expect = 2.568e-49
Identity = 8/15 (53.33%), Postives = 12/15 (80.00%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK +L  E+VQG+N
Sbjct:   80 FRKFKLMCEEVQGRN 94          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_CANDC (40S ribosomal protein S1 OS=Candida dubliniensis (strain CD36 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 3.348e-49
Identity = 91/148 (61.49%), Postives = 119/148 (80.41%), Query Frame = -3
Query:  252 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 692
            LTNF G+DFT+DKLRSLVRKW +L+EA V VKT+D+Y LR+F I FTKR PNQ+K+T YAQ+S++R++R+KM EIM  + ++C L  L  K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G K+
Sbjct:   97 LTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQPNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          

HSP 2 Score: 28.8758 bits (63), Expect = 3.348e-49
Identity = 11/16 (68.75%), Postives = 15/16 (93.75%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            YRKI+LR ++VQGKN+
Sbjct:   81 YRKIKLRVDEVQGKNL 96          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_CANAW (40S ribosomal protein S1 OS=Candida albicans (strain WO-1) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 3.348e-49
Identity = 91/148 (61.49%), Postives = 119/148 (80.41%), Query Frame = -3
Query:  252 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 692
            LTNF G+DFT+DKLRSLVRKW +L+EA V VKT+D+Y LR+F I FTKR PNQ+K+T YAQ+S++R++R+KM EIM  + ++C L  L  K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G K+
Sbjct:   97 LTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQPNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          

HSP 2 Score: 28.8758 bits (63), Expect = 3.348e-49
Identity = 11/16 (68.75%), Postives = 15/16 (93.75%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            YRKI+LR ++VQGKN+
Sbjct:   81 YRKIKLRVDEVQGKNL 96          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_CANAL (40S ribosomal protein S1 OS=Candida albicans GN=RPS1 PE=3 SV=3)

HSP 1 Score: 186.037 bits (471), Expect = 3.348e-49
Identity = 91/148 (61.49%), Postives = 119/148 (80.41%), Query Frame = -3
Query:  252 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 692
            LTNF G+DFT+DKLRSLVRKW +L+EA V VKT+D+Y LR+F I FTKR PNQ+K+T YAQ+S++R++R+KM EIM  + ++C L  L  K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G K+
Sbjct:   97 LTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQPNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          

HSP 2 Score: 28.8758 bits (63), Expect = 3.348e-49
Identity = 11/16 (68.75%), Postives = 15/16 (93.75%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            YRKI+LR ++VQGKN+
Sbjct:   81 YRKIKLRVDEVQGKNL 96          
The following BLAST results are available for this feature:
BLAST of CX296740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
RS3A_TETNG1.970e-4955.2340S ribosomal protein S3a OS=Tetraodon nigroviridi... [more]
RS3A_MACFA1.970e-4957.8640S ribosomal protein S3a OS=Macaca fascicularis G... [more]
RS3A_HUMAN1.970e-4957.8640S ribosomal protein S3a OS=Homo sapiens GN=RPS3A... [more]
RS3A_BOVIN1.970e-4957.8640S ribosomal protein S3a OS=Bos taurus GN=RPS3A P... [more]
RS3A_FELCA1.970e-4957.8640S ribosomal protein S3a (Fragment) OS=Felis catu... [more]
RS3A_YARLI2.338e-4957.3040S ribosomal protein S1 OS=Yarrowia lipolytica GN... [more]
RS3A_NEMVE2.568e-4958.9040S ribosomal protein S3a OS=Nematostella vectensi... [more]
RS3A_CANDC3.348e-4961.4940S ribosomal protein S1 OS=Candida dubliniensis (... [more]
RS3A_CANAW3.348e-4961.4940S ribosomal protein S1 OS=Candida albicans (stra... [more]
RS3A_CANAL3.348e-4961.4940S ribosomal protein S1 OS=Candida albicans GN=RP... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05802C06SK FerrChloL1 Citrus clementina cDNA clone C05802C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296740 ID=CX296740; Name=CX296740; organism=Citrus clementina; type=EST; length=757bp
CCGAATTCGGCACGAGGCTGGAATAAAGAATAAGGTAATCATGTTCATAC
CACAGAAACCGCTGCAGCCATCTCAAATATCAGCTAGAATAAAATATGTA
AACTCAAAACAAATTTGAGTTCATCACAAACAAAACTGCCCAAAAATTAC
TAGATCTGATTGGTTATAAAGACAAACTACAAAAATTTCTTTATTCAAGC
TCCAATCACTTCAGTTGGTGCTTCAGGAATGGGCTCATCAGCTGGCCTTT
CCATCTTTACACCAACATCCTCAGAGTAATCACCATGAACCTCCATCAAC
TTTCCAAGATCAAACTTAGGAGCTTTCAAGATCTTCACTTTGCGAATGAA
AACATTTTGTAAGGGGTATATGCTTAAGGTTGCCTTCTCAATCTCTCTTC
CAATTATTTCAGCAATGAACTTTTCGACCAAGCCCTTAAGATCACAGGAT
GCTGCCTGAGCAATCATGATCTCCCTCATCTTGCGGCGAATCTGTCTAAT
CTGGCTGGCCTGTGCGTAGCAAGTCCTCTTAACCTGATTTGGAAGTCTCT
TGGTGAATCCAATGCAGAACATCCTCAATGTGTAGTTATCAGTGGTCTTG
ACATCCACGTAAGCTTCAATCAACGTATGCCACTTCCTAACCAAGGACCT
CAGCTTGTCTGTAGTGAAATCCATGCCCCAGAAGTTTGTCAAACATTCTT
CCCTTGGACATCTTCAGCTCTTAGTCTGATCTTCCTGTAGCATGCTCTTC
TTCATAT
back to top