CX296740
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_TETNG (40S ribosomal protein S3a OS=Tetraodon nigroviridis GN=rps3a PE=3 SV=3) HSP 1 Score: 190.66 bits (483), Expect = 1.970e-49 Identity = 95/172 (55.23%), Postives = 125/172 (72.67%), Query Frame = -3 Query: 219 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YSEDVGVKMERP--ADEPIPEA 701 + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTKR NQ+++T YAQ Q+RQIR+KM EIM + + DLK +V K I + IG++IEKA SIYPL +V++RKVK+LK PKF+LGKLME+HG+ +D G K+ER + PI E+ Sbjct: 94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKRRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGTAAKATGDDTGAKVERADGYEPPIQES 265 HSP 2 Score: 25.0238 bits (53), Expect = 1.970e-49 Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1 Query: 695 YRKIRLRAEDVQGKN 739 +RK +L EDVQGKN Sbjct: 81 FRKFKLITEDVQGKN 95
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_MACFA (40S ribosomal protein S3a OS=Macaca fascicularis GN=RPS3A PE=2 SV=3) HSP 1 Score: 190.66 bits (483), Expect = 1.970e-49 Identity = 92/159 (57.86%), Postives = 121/159 (76.10%), Query Frame = -3 Query: 246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKMER 701 + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+ NQ+++T YAQ Q+RQIR+KM EIM + + DLK +V K I + IG++IEKA SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S ++ G K+ER Sbjct: 94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 252 HSP 2 Score: 25.0238 bits (53), Expect = 1.970e-49 Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1 Query: 695 YRKIRLRAEDVQGKN 739 +RK +L EDVQGKN Sbjct: 81 FRKFKLITEDVQGKN 95
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_HUMAN (40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2) HSP 1 Score: 190.66 bits (483), Expect = 1.970e-49 Identity = 92/159 (57.86%), Postives = 121/159 (76.10%), Query Frame = -3 Query: 246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKMER 701 + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+ NQ+++T YAQ Q+RQIR+KM EIM + + DLK +V K I + IG++IEKA SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S ++ G K+ER Sbjct: 94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 252 HSP 2 Score: 25.0238 bits (53), Expect = 1.970e-49 Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1 Query: 695 YRKIRLRAEDVQGKN 739 +RK +L EDVQGKN Sbjct: 81 FRKFKLITEDVQGKN 95
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_BOVIN (40S ribosomal protein S3a OS=Bos taurus GN=RPS3A PE=2 SV=3) HSP 1 Score: 190.66 bits (483), Expect = 1.970e-49 Identity = 92/159 (57.86%), Postives = 121/159 (76.10%), Query Frame = -3 Query: 246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKMER 701 + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+ NQ+++T YAQ Q+RQIR+KM EIM + + DLK +V K I + IG++IEKA SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S ++ G K+ER Sbjct: 94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 252 HSP 2 Score: 25.0238 bits (53), Expect = 1.970e-49 Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1 Query: 695 YRKIRLRAEDVQGKN 739 +RK +L EDVQGKN Sbjct: 81 FRKFKLITEDVQGKN 95
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_FELCA (40S ribosomal protein S3a (Fragment) OS=Felis catus GN=RPS3A PE=2 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 1.970e-49 Identity = 92/159 (57.86%), Postives = 121/159 (76.10%), Query Frame = -3 Query: 246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKMER 701 + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+ NQ+++T YAQ Q+RQIR+KM EIM + + DLK +V K I + IG++IEKA SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S ++ G K+ER Sbjct: 90 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 248 HSP 2 Score: 25.0238 bits (53), Expect = 1.970e-49 Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1 Query: 695 YRKIRLRAEDVQGKN 739 +RK +L EDVQGKN Sbjct: 77 FRKFKLITEDVQGKN 91
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_YARLI (40S ribosomal protein S1 OS=Yarrowia lipolytica GN=RPS1 PE=3 SV=2) HSP 1 Score: 195.667 bits (496), Expect = 2.338e-49 Identity = 102/178 (57.30%), Postives = 130/178 (73.03%), Query Frame = -3 Query: 219 KKSMLQEDQTKS*RCPREECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEA 752 KK L+ D+ + + LTNF G DFT+DKLRSLVRKW TLIEA V VKT+D+Y LR+F IGFTKR NQVK+T YAQ SQI QIR+KM +I++ +A++ L L K I E+IGREIEKAT +IYPLQNV+IRKVK+LK PKFDLG L+ +HG ++D G K+ R + + E+ Sbjct: 82 KKVKLRVDEVQG-----KNLLTNFHGFDFTSDKLRSLVRKWQTLIEANVTVKTSDDYFLRLFVIGFTKRQANQVKKTTYAQTSQINQIRKKMTDIVVREASNVTLAQLTAKLIPEVIGREIEKATQNIYPLQNVYIRKVKLLKQPKFDLGALLALHGGATDDNGKKVNREFKDVVLES 254
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_NEMVE (40S ribosomal protein S3a OS=Nematostella vectensis GN=v1g242621 PE=3 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 2.568e-49 Identity = 96/163 (58.90%), Postives = 123/163 (75.46%), Query Frame = -3 Query: 231 CLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS--------EDVGVKMERPADEP 695 CLTNF GM+ TTDKLRSLV+KW TLIEA VDVKTTD Y LRMFCIGFTKR NQ+K+T YA+ +QI+ IR+KM +I+ + ++ DLK +V K I + IG++IEK+ SIYPL +V IRKVK+LK PKFD+GKLME+HG+ S ++ G K++R EP Sbjct: 95 CLTNFHGMNMTTDKLRSLVKKWQTLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVSTNDLKEVVNKLIPDSIGKDIEKSCQSIYPLHDVHIRKVKVLKKPKFDIGKLMEMHGEASSHATTTTTDETGTKIDREGFEP 257 HSP 2 Score: 23.0978 bits (48), Expect = 2.568e-49 Identity = 8/15 (53.33%), Postives = 12/15 (80.00%), Query Frame = -1 Query: 695 YRKIRLRAEDVQGKN 739 +RK +L E+VQG+N Sbjct: 80 FRKFKLMCEEVQGRN 94
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_CANDC (40S ribosomal protein S1 OS=Candida dubliniensis (strain CD36 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=RPS1 PE=3 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 3.348e-49 Identity = 91/148 (61.49%), Postives = 119/148 (80.41%), Query Frame = -3 Query: 252 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 692 LTNF G+DFT+DKLRSLVRKW +L+EA V VKT+D+Y LR+F I FTKR PNQ+K+T YAQ+S++R++R+KM EIM + ++C L L K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G K+ Sbjct: 97 LTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQPNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244 HSP 2 Score: 28.8758 bits (63), Expect = 3.348e-49 Identity = 11/16 (68.75%), Postives = 15/16 (93.75%), Query Frame = -1 Query: 692 YRKIRLRAEDVQGKNV 739 YRKI+LR ++VQGKN+ Sbjct: 81 YRKIKLRVDEVQGKNL 96
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_CANAW (40S ribosomal protein S1 OS=Candida albicans (strain WO-1) GN=RPS1 PE=3 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 3.348e-49 Identity = 91/148 (61.49%), Postives = 119/148 (80.41%), Query Frame = -3 Query: 252 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 692 LTNF G+DFT+DKLRSLVRKW +L+EA V VKT+D+Y LR+F I FTKR PNQ+K+T YAQ+S++R++R+KM EIM + ++C L L K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G K+ Sbjct: 97 LTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQPNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244 HSP 2 Score: 28.8758 bits (63), Expect = 3.348e-49 Identity = 11/16 (68.75%), Postives = 15/16 (93.75%), Query Frame = -1 Query: 692 YRKIRLRAEDVQGKNV 739 YRKI+LR ++VQGKN+ Sbjct: 81 YRKIKLRVDEVQGKNL 96
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_CANAL (40S ribosomal protein S1 OS=Candida albicans GN=RPS1 PE=3 SV=3) HSP 1 Score: 186.037 bits (471), Expect = 3.348e-49 Identity = 91/148 (61.49%), Postives = 119/148 (80.41%), Query Frame = -3 Query: 252 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 692 LTNF G+DFT+DKLRSLVRKW +L+EA V VKT+D+Y LR+F I FTKR PNQ+K+T YAQ+S++R++R+KM EIM + ++C L L K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G K+ Sbjct: 97 LTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQPNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244 HSP 2 Score: 28.8758 bits (63), Expect = 3.348e-49 Identity = 11/16 (68.75%), Postives = 15/16 (93.75%), Query Frame = -1 Query: 692 YRKIRLRAEDVQGKNV 739 YRKI+LR ++VQGKN+ Sbjct: 81 YRKIKLRVDEVQGKNL 96 The following BLAST results are available for this feature:
BLAST of CX296740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 166
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296740 ID=CX296740; Name=CX296740; organism=Citrus clementina; type=EST; length=757bpback to top |