CX296740

Overview
NameCX296740
Unique NameCX296740
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig928 contig Ccv1_Contig928:282..1039. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_RAT (40S ribosomal protein S3a OS=Rattus norvegicus GN=Rps3a PE=1 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 4.363e-49
Identity = 91/159 (57.23%), Postives = 120/159 (75.47%), Query Frame = -3
Query:  246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKMER 701
            + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+         ++ G K+ER
Sbjct:   94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKTTGDETGAKVER 252          

HSP 2 Score: 25.0238 bits (53), Expect = 4.363e-49
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK +L  EDVQGKN
Sbjct:   81 FRKFKLITEDVQGKN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_MOUSE (40S ribosomal protein S3a OS=Mus musculus GN=Rps3a PE=1 SV=3)

HSP 1 Score: 189.504 bits (480), Expect = 4.363e-49
Identity = 91/159 (57.23%), Postives = 120/159 (75.47%), Query Frame = -3
Query:  246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKMER 701
            + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+         ++ G K+ER
Sbjct:   94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVER 252          

HSP 2 Score: 25.0238 bits (53), Expect = 4.363e-49
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK +L  EDVQGKN
Sbjct:   81 FRKFKLITEDVQGKN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_GECJA (40S ribosomal protein S3a OS=Gecko japonicus GN=RPS3A PE=2 SV=3)

HSP 1 Score: 189.504 bits (480), Expect = 4.363e-49
Identity = 91/159 (57.23%), Postives = 121/159 (76.10%), Query Frame = -3
Query:  246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKMER 701
            + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG+++EKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S       ++ G K+ER
Sbjct:   94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDMEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 252          

HSP 2 Score: 25.0238 bits (53), Expect = 4.363e-49
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK +L  EDVQGKN
Sbjct:   81 FRKFKLITEDVQGKN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_SOLSE (40S ribosomal protein S3a OS=Solea senegalensis GN=rps3a PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 5.686e-49
Identity = 90/161 (55.90%), Postives = 120/161 (74.53%), Query Frame = -3
Query:  246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YSEDVGVKMER 701
            + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + +G++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+           +D G K+ER
Sbjct:   94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGTGTATKATGDDTGAKVER 254          

HSP 2 Score: 25.0238 bits (53), Expect = 5.686e-49
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK +L  EDVQGKN
Sbjct:   81 FRKFKLITEDVQGKN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_ORYLA (40S ribosomal protein S3a OS=Oryzias latipes GN=rps3a PE=2 SV=3)

HSP 1 Score: 189.119 bits (479), Expect = 5.686e-49
Identity = 91/161 (56.52%), Postives = 120/161 (74.53%), Query Frame = -3
Query:  246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YSEDVGVKMER 701
            + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  NQV++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + +G++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+           +D G K+ER
Sbjct:   94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQVRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGGAAKASGDDTGAKVER 254          

HSP 2 Score: 25.0238 bits (53), Expect = 5.686e-49
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK +L  EDVQGKN
Sbjct:   81 FRKFKLITEDVQGKN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_SUBDO (40S ribosomal protein S3a OS=Suberites domuncula PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 7.416e-49
Identity = 91/157 (57.96%), Postives = 116/157 (73.89%), Query Frame = -3
Query:  228 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGV--KMERPADEPI 692
            LTNF GM  TTDKLR+LV+KW TLIEA VDVKTTD Y LR+FCIGFTKR PNQ+K+T YA++SQ R IR+KM ++M  + +  DLK  V K I + IG++IEK   SIYPL +VF+RKVK+LK PKFD+G+LM++HG+ +   G     E P  E +
Sbjct:   96 LTNFHGMTMTTDKLRALVKKWQTLIEANVDVKTTDGYLLRLFCIGFTKRQPNQIKKTSYAKSSQCRSIRKKMVDVMTREVSQIDLKETVNKLIPDSIGKDIEKKCQSIYPLHDVFVRKVKVLKKPKFDIGRLMDLHGESAGGKGATDTFEPPVQESV 252          

HSP 2 Score: 27.7202 bits (60), Expect = 7.416e-49
Identity = 11/16 (68.75%), Postives = 14/16 (87.50%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            +RK RL +ED+QGKNV
Sbjct:   80 FRKFRLISEDIQGKNV 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_SALSA (40S ribosomal protein S3a OS=Salmo salar GN=rps3a PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 9.659e-49
Identity = 89/161 (55.28%), Postives = 120/161 (74.53%), Query Frame = -3
Query:  246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YSEDVGVKMER 701
            + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + +G++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+           +D G K++R
Sbjct:   94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGSSAAKPSGDDTGAKVDR 254          

HSP 2 Score: 25.409 bits (54), Expect = 9.659e-49
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK +L +EDVQGKN
Sbjct:   81 FRKFKLISEDVQGKN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_XENTR (40S ribosomal protein S3a OS=Xenopus tropicalis GN=rps3a PE=2 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 9.660e-49
Identity = 90/159 (56.60%), Postives = 120/159 (75.47%), Query Frame = -3
Query:  246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKMER 701
            + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+         ++ G K+ER
Sbjct:   94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPAGDETGAKVER 252          

HSP 2 Score: 25.0238 bits (53), Expect = 9.660e-49
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK +L  EDVQGKN
Sbjct:   81 FRKFKLITEDVQGKN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_TAEGU (40S ribosomal protein S3a OS=Taeniopygia guttata GN=RPS3A PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 9.660e-49
Identity = 90/159 (56.60%), Postives = 120/159 (75.47%), Query Frame = -3
Query:  246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKMER 701
            + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+         ++ G K+ER
Sbjct:   94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGTKVER 252          

HSP 2 Score: 25.0238 bits (53), Expect = 9.660e-49
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK +L  EDVQGKN
Sbjct:   81 FRKFKLITEDVQGKN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_USTMA (40S ribosomal protein S1 OS=Ustilago maydis GN=RPS1 PE=3 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 9.662e-49
Identity = 100/164 (60.98%), Postives = 123/164 (75.00%), Query Frame = -3
Query:  219 CLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY----SEDVGVKMERPA-DEPIPEA 695
            CLTNF+GMDFT+DKLRSLVRKW +LIEA+ DVKTTD Y LR+F I FTK+  NQVK+  YA++S IR IR+KM EI+  +A SCDL+  V K I E+IGRE+EKAT  I+PL++V++RKVK+LKAPK DL KL+EVHG      +ED GVK       EP P A
Sbjct:   95 CLTNFYGMDFTSDKLRSLVRKWQSLIEAHQDVKTTDGYLLRVFVIAFTKKRANQVKKNTYAKSSHIRAIRQKMFEIVQREANSCDLREFVAKLIPEVIGREVEKATQGIFPLKDVYVRKVKVLKAPKDDLNKLLEVHGGAAIAGAEDAGVKARNTEFKEPAPLA 258          

HSP 2 Score: 20.7866 bits (42), Expect = 9.662e-49
Identity = 6/14 (42.86%), Postives = 11/14 (78.57%), Query Frame = -1
Query:  698 YRKIRLRAEDVQGK 739
            YRK +L+ + +QG+
Sbjct:   80 YRKFKLKVDGIQGR 93          
The following BLAST results are available for this feature:
BLAST of CX296740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
RS3A_RAT4.363e-4957.2340S ribosomal protein S3a OS=Rattus norvegicus GN=... [more]
RS3A_MOUSE4.363e-4957.2340S ribosomal protein S3a OS=Mus musculus GN=Rps3a... [more]
RS3A_GECJA4.363e-4957.2340S ribosomal protein S3a OS=Gecko japonicus GN=RP... [more]
RS3A_SOLSE5.686e-4955.9040S ribosomal protein S3a OS=Solea senegalensis GN... [more]
RS3A_ORYLA5.686e-4956.5240S ribosomal protein S3a OS=Oryzias latipes GN=rp... [more]
RS3A_SUBDO7.416e-4957.9640S ribosomal protein S3a OS=Suberites domuncula P... [more]
RS3A_SALSA9.659e-4955.2840S ribosomal protein S3a OS=Salmo salar GN=rps3a ... [more]
RS3A_XENTR9.660e-4956.6040S ribosomal protein S3a OS=Xenopus tropicalis GN... [more]
RS3A_TAEGU9.660e-4956.6040S ribosomal protein S3a OS=Taeniopygia guttata G... [more]
RS3A_USTMA9.662e-4960.9840S ribosomal protein S1 OS=Ustilago maydis GN=RPS... [more]

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Properties
Property NameValue
Genbank descriptionC05802C06SK FerrChloL1 Citrus clementina cDNA clone C05802C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296740 ID=CX296740; Name=CX296740; organism=Citrus clementina; type=EST; length=757bp
CCGAATTCGGCACGAGGCTGGAATAAAGAATAAGGTAATCATGTTCATAC
CACAGAAACCGCTGCAGCCATCTCAAATATCAGCTAGAATAAAATATGTA
AACTCAAAACAAATTTGAGTTCATCACAAACAAAACTGCCCAAAAATTAC
TAGATCTGATTGGTTATAAAGACAAACTACAAAAATTTCTTTATTCAAGC
TCCAATCACTTCAGTTGGTGCTTCAGGAATGGGCTCATCAGCTGGCCTTT
CCATCTTTACACCAACATCCTCAGAGTAATCACCATGAACCTCCATCAAC
TTTCCAAGATCAAACTTAGGAGCTTTCAAGATCTTCACTTTGCGAATGAA
AACATTTTGTAAGGGGTATATGCTTAAGGTTGCCTTCTCAATCTCTCTTC
CAATTATTTCAGCAATGAACTTTTCGACCAAGCCCTTAAGATCACAGGAT
GCTGCCTGAGCAATCATGATCTCCCTCATCTTGCGGCGAATCTGTCTAAT
CTGGCTGGCCTGTGCGTAGCAAGTCCTCTTAACCTGATTTGGAAGTCTCT
TGGTGAATCCAATGCAGAACATCCTCAATGTGTAGTTATCAGTGGTCTTG
ACATCCACGTAAGCTTCAATCAACGTATGCCACTTCCTAACCAAGGACCT
CAGCTTGTCTGTAGTGAAATCCATGCCCCAGAAGTTTGTCAAACATTCTT
CCCTTGGACATCTTCAGCTCTTAGTCTGATCTTCCTGTAGCATGCTCTTC
TTCATAT
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