CX296740
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_RAT (40S ribosomal protein S3a OS=Rattus norvegicus GN=Rps3a PE=1 SV=2) HSP 1 Score: 189.504 bits (480), Expect = 4.363e-49 Identity = 91/159 (57.23%), Postives = 120/159 (75.47%), Query Frame = -3 Query: 246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKMER 701 + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+ NQ+++T YAQ Q+RQIR+KM EIM + + DLK +V K I + IG++IEKA SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ ++ G K+ER Sbjct: 94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKTTGDETGAKVER 252 HSP 2 Score: 25.0238 bits (53), Expect = 4.363e-49 Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1 Query: 695 YRKIRLRAEDVQGKN 739 +RK +L EDVQGKN Sbjct: 81 FRKFKLITEDVQGKN 95
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_MOUSE (40S ribosomal protein S3a OS=Mus musculus GN=Rps3a PE=1 SV=3) HSP 1 Score: 189.504 bits (480), Expect = 4.363e-49 Identity = 91/159 (57.23%), Postives = 120/159 (75.47%), Query Frame = -3 Query: 246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKMER 701 + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+ NQ+++T YAQ Q+RQIR+KM EIM + + DLK +V K I + IG++IEKA SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ ++ G K+ER Sbjct: 94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVER 252 HSP 2 Score: 25.0238 bits (53), Expect = 4.363e-49 Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1 Query: 695 YRKIRLRAEDVQGKN 739 +RK +L EDVQGKN Sbjct: 81 FRKFKLITEDVQGKN 95
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_GECJA (40S ribosomal protein S3a OS=Gecko japonicus GN=RPS3A PE=2 SV=3) HSP 1 Score: 189.504 bits (480), Expect = 4.363e-49 Identity = 91/159 (57.23%), Postives = 121/159 (76.10%), Query Frame = -3 Query: 246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKMER 701 + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+ NQ+++T YAQ Q+RQIR+KM EIM + + DLK +V K I + IG+++EKA SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S ++ G K+ER Sbjct: 94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDMEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 252 HSP 2 Score: 25.0238 bits (53), Expect = 4.363e-49 Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1 Query: 695 YRKIRLRAEDVQGKN 739 +RK +L EDVQGKN Sbjct: 81 FRKFKLITEDVQGKN 95
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_SOLSE (40S ribosomal protein S3a OS=Solea senegalensis GN=rps3a PE=2 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 5.686e-49 Identity = 90/161 (55.90%), Postives = 120/161 (74.53%), Query Frame = -3 Query: 246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YSEDVGVKMER 701 + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+ NQ+++T YAQ Q+RQIR+KM EIM + + DLK +V K I + +G++IEKA SIYPL +V++RKVK+LK PKF+LGKLME+HG+ +D G K+ER Sbjct: 94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGTGTATKATGDDTGAKVER 254 HSP 2 Score: 25.0238 bits (53), Expect = 5.686e-49 Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1 Query: 695 YRKIRLRAEDVQGKN 739 +RK +L EDVQGKN Sbjct: 81 FRKFKLITEDVQGKN 95
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_ORYLA (40S ribosomal protein S3a OS=Oryzias latipes GN=rps3a PE=2 SV=3) HSP 1 Score: 189.119 bits (479), Expect = 5.686e-49 Identity = 91/161 (56.52%), Postives = 120/161 (74.53%), Query Frame = -3 Query: 246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YSEDVGVKMER 701 + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+ NQV++T YAQ Q+RQIR+KM EIM + + DLK +V K I + +G++IEKA SIYPL +V++RKVK+LK PKF+LGKLME+HG+ +D G K+ER Sbjct: 94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQVRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGGAAKASGDDTGAKVER 254 HSP 2 Score: 25.0238 bits (53), Expect = 5.686e-49 Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1 Query: 695 YRKIRLRAEDVQGKN 739 +RK +L EDVQGKN Sbjct: 81 FRKFKLITEDVQGKN 95
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_SUBDO (40S ribosomal protein S3a OS=Suberites domuncula PE=2 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 7.416e-49 Identity = 91/157 (57.96%), Postives = 116/157 (73.89%), Query Frame = -3 Query: 228 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGV--KMERPADEPI 692 LTNF GM TTDKLR+LV+KW TLIEA VDVKTTD Y LR+FCIGFTKR PNQ+K+T YA++SQ R IR+KM ++M + + DLK V K I + IG++IEK SIYPL +VF+RKVK+LK PKFD+G+LM++HG+ + G E P E + Sbjct: 96 LTNFHGMTMTTDKLRALVKKWQTLIEANVDVKTTDGYLLRLFCIGFTKRQPNQIKKTSYAKSSQCRSIRKKMVDVMTREVSQIDLKETVNKLIPDSIGKDIEKKCQSIYPLHDVFVRKVKVLKKPKFDIGRLMDLHGESAGGKGATDTFEPPVQESV 252 HSP 2 Score: 27.7202 bits (60), Expect = 7.416e-49 Identity = 11/16 (68.75%), Postives = 14/16 (87.50%), Query Frame = -1 Query: 692 YRKIRLRAEDVQGKNV 739 +RK RL +ED+QGKNV Sbjct: 80 FRKFRLISEDIQGKNV 95
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_SALSA (40S ribosomal protein S3a OS=Salmo salar GN=rps3a PE=2 SV=1) HSP 1 Score: 187.963 bits (476), Expect = 9.659e-49 Identity = 89/161 (55.28%), Postives = 120/161 (74.53%), Query Frame = -3 Query: 246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YSEDVGVKMER 701 + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+ NQ+++T YAQ Q+RQIR+KM EIM + + DLK +V K I + +G++IEKA SIYPL +V++RKVK+LK PKF+LGKLME+HG+ +D G K++R Sbjct: 94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGSSAAKPSGDDTGAKVDR 254 HSP 2 Score: 25.409 bits (54), Expect = 9.659e-49 Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = -1 Query: 695 YRKIRLRAEDVQGKN 739 +RK +L +EDVQGKN Sbjct: 81 FRKFKLISEDVQGKN 95
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_XENTR (40S ribosomal protein S3a OS=Xenopus tropicalis GN=rps3a PE=2 SV=3) HSP 1 Score: 188.348 bits (477), Expect = 9.660e-49 Identity = 90/159 (56.60%), Postives = 120/159 (75.47%), Query Frame = -3 Query: 246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKMER 701 + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+ NQ+++T YAQ Q+RQIR+KM EIM + + DLK +V K I + IG++IEKA SIYPL +V++RKVK+LK PKF+LGKLME+HG+ ++ G K+ER Sbjct: 94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPAGDETGAKVER 252 HSP 2 Score: 25.0238 bits (53), Expect = 9.660e-49 Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1 Query: 695 YRKIRLRAEDVQGKN 739 +RK +L EDVQGKN Sbjct: 81 FRKFKLITEDVQGKN 95
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_TAEGU (40S ribosomal protein S3a OS=Taeniopygia guttata GN=RPS3A PE=2 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 9.660e-49 Identity = 90/159 (56.60%), Postives = 120/159 (75.47%), Query Frame = -3 Query: 246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKMER 701 + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+ NQ+++T YAQ Q+RQIR+KM EIM + + DLK +V K I + IG++IEKA SIYPL +V++RKVK+LK PKF+LGKLME+HG+ ++ G K+ER Sbjct: 94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGTKVER 252 HSP 2 Score: 25.0238 bits (53), Expect = 9.660e-49 Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1 Query: 695 YRKIRLRAEDVQGKN 739 +RK +L EDVQGKN Sbjct: 81 FRKFKLITEDVQGKN 95
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_USTMA (40S ribosomal protein S1 OS=Ustilago maydis GN=RPS1 PE=3 SV=2) HSP 1 Score: 192.586 bits (488), Expect = 9.662e-49 Identity = 100/164 (60.98%), Postives = 123/164 (75.00%), Query Frame = -3 Query: 219 CLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY----SEDVGVKMERPA-DEPIPEA 695 CLTNF+GMDFT+DKLRSLVRKW +LIEA+ DVKTTD Y LR+F I FTK+ NQVK+ YA++S IR IR+KM EI+ +A SCDL+ V K I E+IGRE+EKAT I+PL++V++RKVK+LKAPK DL KL+EVHG +ED GVK EP P A Sbjct: 95 CLTNFYGMDFTSDKLRSLVRKWQSLIEAHQDVKTTDGYLLRVFVIAFTKKRANQVKKNTYAKSSHIRAIRQKMFEIVQREANSCDLREFVAKLIPEVIGREVEKATQGIFPLKDVYVRKVKVLKAPKDDLNKLLEVHGGAAIAGAEDAGVKARNTEFKEPAPLA 258 HSP 2 Score: 20.7866 bits (42), Expect = 9.662e-49 Identity = 6/14 (42.86%), Postives = 11/14 (78.57%), Query Frame = -1 Query: 698 YRKIRLRAEDVQGK 739 YRK +L+ + +QG+ Sbjct: 80 YRKFKLKVDGIQGR 93 The following BLAST results are available for this feature:
BLAST of CX296740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 166
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296740 ID=CX296740; Name=CX296740; organism=Citrus clementina; type=EST; length=757bpback to top |