CX296740
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_PICGU (40S ribosomal protein S1 OS=Pichia guilliermondii GN=RPS1 PE=3 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 9.663e-49 Identity = 93/148 (62.84%), Postives = 118/148 (79.73%), Query Frame = -3 Query: 252 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKM 692 LTNF G+DFT+DKLRSLVRKW +L+EA V VKT D+Y LR+F I FTKR PNQVK+T YAQ+S++R+IR+KM EIM + ++ L L +K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG LM +HG+ SE+ G K+ Sbjct: 97 LTNFHGIDFTSDKLRSLVRKWQSLVEANVTVKTADDYYLRVFAIAFTKRQPNQVKKTTYAQSSKLREIRKKMMEIMQREVSNSTLAQLTQKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGNLMSLHGEGASEEKGKKV 244 HSP 2 Score: 28.4906 bits (62), Expect = 9.663e-49 Identity = 10/16 (62.50%), Postives = 15/16 (93.75%), Query Frame = -1 Query: 692 YRKIRLRAEDVQGKNV 739 YRK++LR ++VQGKN+ Sbjct: 81 YRKVKLRVDEVQGKNL 96
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_DANRE (40S ribosomal protein S3a OS=Danio rerio GN=rps3a PE=2 SV=3) HSP 1 Score: 187.963 bits (476), Expect = 1.259e-48 Identity = 93/173 (53.76%), Postives = 124/173 (71.68%), Query Frame = -3 Query: 219 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE----------DVGVKMERP--ADEPIPEA 701 + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+ NQ+++T YAQ Q+RQIR+KM EIM + + DLK +V K I + +G++IEKA SIYPL +V++RKVK+LK PKF+LGKLME+HG+ D G K+ER + PI E+ Sbjct: 94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGSTSAAAKPAEGDTGAKVERADGYEPPIQES 266 HSP 2 Score: 25.0238 bits (53), Expect = 1.259e-48 Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1 Query: 695 YRKIRLRAEDVQGKN 739 +RK +L EDVQGKN Sbjct: 81 FRKFKLVTEDVQGKN 95
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_EIMTE (40S ribosomal protein S3a OS=Eimeria tenella PE=2 SV=3) HSP 1 Score: 187.963 bits (476), Expect = 1.259e-48 Identity = 90/159 (56.60%), Postives = 120/159 (75.47%), Query Frame = -3 Query: 246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKMER 701 + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+ NQ+++T YAQ Q+RQIR+KM EIM + + DLK +V K I + IG++IEKA SIYPL +V++RKVK+LK PKF+LGKLME+HG+ ++ G K+ER Sbjct: 94 KNCLTNFHGMDLTRDKMFSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTGEFQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGAKVER 252 HSP 2 Score: 25.0238 bits (53), Expect = 1.259e-48 Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1 Query: 695 YRKIRLRAEDVQGKN 739 +RK +L EDVQGKN Sbjct: 81 FRKFKLITEDVQGKN 95
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3AA_XENLA (40S ribosomal protein S3a-A OS=Xenopus laevis GN=rps3a-A PE=2 SV=3) HSP 1 Score: 187.578 bits (475), Expect = 1.641e-48 Identity = 90/159 (56.60%), Postives = 120/159 (75.47%), Query Frame = -3 Query: 246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKMER 701 + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+ NQ+++T YAQ Q+RQIR+KM EIM + + DLK +V K I + IG++IEKA SIYPL +V++RKVK+LK PKF+LGKLME+HG+ ++ G K+ER Sbjct: 94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMFEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGTGKPAGDETGAKVER 252 HSP 2 Score: 25.0238 bits (53), Expect = 1.641e-48 Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1 Query: 695 YRKIRLRAEDVQGKN 739 +RK +L EDVQGKN Sbjct: 81 FRKFKLITEDVQGKN 95
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_CALJA (40S ribosomal protein S3a OS=Callithrix jacchus GN=RPS3A PE=3 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 2.139e-48 Identity = 91/159 (57.23%), Postives = 120/159 (75.47%), Query Frame = -3 Query: 246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKMER 701 + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+ NQ+++T YAQ Q+ QIR+KM EIM + + DLK +V K I + IG++IEKA SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S ++ G K+ER Sbjct: 94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKHNNQIRKTSYAQHQQVCQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKIPKFELGKLMELHGEGSSSGKATGDETGAKVER 252 HSP 2 Score: 25.0238 bits (53), Expect = 2.139e-48 Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1 Query: 695 YRKIRLRAEDVQGKN 739 +RK +L EDVQGKN Sbjct: 81 FRKFKLITEDVQGKN 95
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3AB_XENLA (40S ribosomal protein S3a-B OS=Xenopus laevis GN=rps3a-B PE=2 SV=1) HSP 1 Score: 186.808 bits (473), Expect = 2.788e-48 Identity = 90/159 (56.60%), Postives = 120/159 (75.47%), Query Frame = -3 Query: 246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKMER 701 + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+ NQ+++T YAQ Q+RQIR+KM EIM + + DLK +V K I + IG++IEKA SIYPL +V+ RKVK+LK PKF+LGKLME+HG+ +++ G K+ER Sbjct: 94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMSREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYARKVKMLKKPKFELGKLMELHGEGGGSGKPAADETGAKVER 252 HSP 2 Score: 25.0238 bits (53), Expect = 2.788e-48 Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1 Query: 695 YRKIRLRAEDVQGKN 739 +RK +L EDVQGKN Sbjct: 81 FRKFKLITEDVQGKN 95
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_CANTT (40S ribosomal protein S1 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=RPS1 PE=3 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 3.635e-48 Identity = 90/148 (60.81%), Postives = 117/148 (79.05%), Query Frame = -3 Query: 252 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 692 LTNF G+DFT+DKLRSLVRKW +L+EA V VKT D+Y LR+F I FTKR NQ+K+T YAQ+S++R++R+KM EIM + ++C L L K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G K+ Sbjct: 97 LTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTADDYVLRVFAIAFTKRQANQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244 HSP 2 Score: 28.8758 bits (63), Expect = 3.635e-48 Identity = 11/16 (68.75%), Postives = 15/16 (93.75%), Query Frame = -1 Query: 692 YRKIRLRAEDVQGKNV 739 YRKI+LR ++VQGKN+ Sbjct: 81 YRKIKLRVDEVQGKNL 96
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A2_SCHPO (40S ribosomal protein S1-B OS=Schizosaccharomyces pombe GN=rps102 PE=1 SV=3) HSP 1 Score: 183.726 bits (465), Expect = 6.176e-48 Identity = 92/150 (61.33%), Postives = 118/150 (78.67%), Query Frame = -3 Query: 252 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKM 701 + CLT+F G+ T+DKLRSLVRKW T IEA +KTTD Y R+F IGFT+R NQVK+T YAQ+SQIR IR+KM +++ Q +SC ++ LV+K I E+IGREIE+AT SI+PLQNV +RKVKILKAPK D KL+E+HG+ S+DVG K+ Sbjct: 94 KSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHDAQKLLELHGE-SQDVGTKV 242 HSP 2 Score: 26.9498 bits (58), Expect = 6.176e-48 Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = -1 Query: 695 YRKIRLRAEDVQGKN 739 +RK++LR ED+QGK+ Sbjct: 81 FRKVKLRVEDIQGKS 95
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_OPHHA (40S ribosomal protein S3a OS=Ophiophagus hannah GN=RPS3A PE=2 SV=3) HSP 1 Score: 185.267 bits (469), Expect = 8.046e-48 Identity = 88/159 (55.35%), Postives = 119/159 (74.84%), Query Frame = -3 Query: 246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKMER 701 + CL NF GMD T DK+ S+V+KW T+IEA++DVKTTD Y LR+FC+GFTK+ NQ+++T YAQ Q+RQIR+KM EIM + + DLK +V K I + IG++IEKA SIYPL +V++RKVK+LK PKF+LGKLME+HG+ ++ G K+ER Sbjct: 94 KNCLINFHGMDLTRDKMCSMVKKWQTMIEAHIDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMVEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGSGKPSGDETGAKVER 252 HSP 2 Score: 25.0238 bits (53), Expect = 8.046e-48 Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1 Query: 695 YRKIRLRAEDVQGKN 739 +RK +L EDVQGKN Sbjct: 81 FRKFKLITEDVQGKN 95
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_BABBO (40S ribosomal protein S3a OS=Babesia bovis GN=BBOV_III001480 PE=3 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 8.046e-48 Identity = 89/145 (61.38%), Postives = 113/145 (77.93%), Query Frame = -3 Query: 261 CLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 695 CLTNF G T DKL SL+RK ++LIEA+ DVKTTD YTLRMFCIG+TKR P Q+K TCY ++S+ R +RRKM E+M +A++ ++ +V+K I E IG+EIEKA S++PLQNV IRK+K+LK PKFDL KLMEVH D SE+ G Sbjct: 96 CLTNFHGTSVTRDKLCSLIRKNYSLIEAFTDVKTTDGYTLRMFCIGYTKRRPGQLKSTCYIRSSRTRVVRRKMIEVMQREASTTSMREVVKKIIPESIGKEIEKACKSVFPLQNVLIRKIKVLKKPKFDLTKLMEVHTDISEETG 240 HSP 2 Score: 26.5646 bits (57), Expect = 8.046e-48 Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = -1 Query: 695 YRKIRLRAEDVQGKN 739 YRKI+L ED+QG+N Sbjct: 81 YRKIKLCCEDIQGRN 95 The following BLAST results are available for this feature:
BLAST of CX296740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 166
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296740 ID=CX296740; Name=CX296740; organism=Citrus clementina; type=EST; length=757bpback to top |