CX296740

Overview
NameCX296740
Unique NameCX296740
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig928 contig Ccv1_Contig928:282..1039. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_PICGU (40S ribosomal protein S1 OS=Pichia guilliermondii GN=RPS1 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 9.663e-49
Identity = 93/148 (62.84%), Postives = 118/148 (79.73%), Query Frame = -3
Query:  252 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKM 692
            LTNF G+DFT+DKLRSLVRKW +L+EA V VKT D+Y LR+F I FTKR PNQVK+T YAQ+S++R+IR+KM EIM  + ++  L  L +K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG LM +HG+  SE+ G K+
Sbjct:   97 LTNFHGIDFTSDKLRSLVRKWQSLVEANVTVKTADDYYLRVFAIAFTKRQPNQVKKTTYAQSSKLREIRKKMMEIMQREVSNSTLAQLTQKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGNLMSLHGEGASEEKGKKV 244          

HSP 2 Score: 28.4906 bits (62), Expect = 9.663e-49
Identity = 10/16 (62.50%), Postives = 15/16 (93.75%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            YRK++LR ++VQGKN+
Sbjct:   81 YRKVKLRVDEVQGKNL 96          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_DANRE (40S ribosomal protein S3a OS=Danio rerio GN=rps3a PE=2 SV=3)

HSP 1 Score: 187.963 bits (476), Expect = 1.259e-48
Identity = 93/173 (53.76%), Postives = 124/173 (71.68%), Query Frame = -3
Query:  219 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE----------DVGVKMERP--ADEPIPEA 701
            + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + +G++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+             D G K+ER    + PI E+
Sbjct:   94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGSTSAAAKPAEGDTGAKVERADGYEPPIQES 266          

HSP 2 Score: 25.0238 bits (53), Expect = 1.259e-48
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK +L  EDVQGKN
Sbjct:   81 FRKFKLVTEDVQGKN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_EIMTE (40S ribosomal protein S3a OS=Eimeria tenella PE=2 SV=3)

HSP 1 Score: 187.963 bits (476), Expect = 1.259e-48
Identity = 90/159 (56.60%), Postives = 120/159 (75.47%), Query Frame = -3
Query:  246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKMER 701
            + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+         ++ G K+ER
Sbjct:   94 KNCLTNFHGMDLTRDKMFSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTGEFQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGAKVER 252          

HSP 2 Score: 25.0238 bits (53), Expect = 1.259e-48
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK +L  EDVQGKN
Sbjct:   81 FRKFKLITEDVQGKN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3AA_XENLA (40S ribosomal protein S3a-A OS=Xenopus laevis GN=rps3a-A PE=2 SV=3)

HSP 1 Score: 187.578 bits (475), Expect = 1.641e-48
Identity = 90/159 (56.60%), Postives = 120/159 (75.47%), Query Frame = -3
Query:  246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKMER 701
            + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+         ++ G K+ER
Sbjct:   94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMFEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGTGKPAGDETGAKVER 252          

HSP 2 Score: 25.0238 bits (53), Expect = 1.641e-48
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK +L  EDVQGKN
Sbjct:   81 FRKFKLITEDVQGKN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_CALJA (40S ribosomal protein S3a OS=Callithrix jacchus GN=RPS3A PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.139e-48
Identity = 91/159 (57.23%), Postives = 120/159 (75.47%), Query Frame = -3
Query:  246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKMER 701
            + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+ QIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S       ++ G K+ER
Sbjct:   94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKHNNQIRKTSYAQHQQVCQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKIPKFELGKLMELHGEGSSSGKATGDETGAKVER 252          

HSP 2 Score: 25.0238 bits (53), Expect = 2.139e-48
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK +L  EDVQGKN
Sbjct:   81 FRKFKLITEDVQGKN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3AB_XENLA (40S ribosomal protein S3a-B OS=Xenopus laevis GN=rps3a-B PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 2.788e-48
Identity = 90/159 (56.60%), Postives = 120/159 (75.47%), Query Frame = -3
Query:  246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKMER 701
            + CLTNF GMD T DK+ S+V+KW T+IEA+VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +V+ RKVK+LK PKF+LGKLME+HG+        +++ G K+ER
Sbjct:   94 KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMSREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYARKVKMLKKPKFELGKLMELHGEGGGSGKPAADETGAKVER 252          

HSP 2 Score: 25.0238 bits (53), Expect = 2.788e-48
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK +L  EDVQGKN
Sbjct:   81 FRKFKLITEDVQGKN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_CANTT (40S ribosomal protein S1 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 3.635e-48
Identity = 90/148 (60.81%), Postives = 117/148 (79.05%), Query Frame = -3
Query:  252 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 692
            LTNF G+DFT+DKLRSLVRKW +L+EA V VKT D+Y LR+F I FTKR  NQ+K+T YAQ+S++R++R+KM EIM  + ++C L  L  K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G K+
Sbjct:   97 LTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTADDYVLRVFAIAFTKRQANQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          

HSP 2 Score: 28.8758 bits (63), Expect = 3.635e-48
Identity = 11/16 (68.75%), Postives = 15/16 (93.75%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            YRKI+LR ++VQGKN+
Sbjct:   81 YRKIKLRVDEVQGKNL 96          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A2_SCHPO (40S ribosomal protein S1-B OS=Schizosaccharomyces pombe GN=rps102 PE=1 SV=3)

HSP 1 Score: 183.726 bits (465), Expect = 6.176e-48
Identity = 92/150 (61.33%), Postives = 118/150 (78.67%), Query Frame = -3
Query:  252 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKM 701
            + CLT+F G+  T+DKLRSLVRKW T IEA   +KTTD Y  R+F IGFT+R  NQVK+T YAQ+SQIR IR+KM +++  Q +SC ++ LV+K I E+IGREIE+AT SI+PLQNV +RKVKILKAPK D  KL+E+HG+ S+DVG K+
Sbjct:   94 KSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHDAQKLLELHGE-SQDVGTKV 242          

HSP 2 Score: 26.9498 bits (58), Expect = 6.176e-48
Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK++LR ED+QGK+
Sbjct:   81 FRKVKLRVEDIQGKS 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_OPHHA (40S ribosomal protein S3a OS=Ophiophagus hannah GN=RPS3A PE=2 SV=3)

HSP 1 Score: 185.267 bits (469), Expect = 8.046e-48
Identity = 88/159 (55.35%), Postives = 119/159 (74.84%), Query Frame = -3
Query:  246 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKMER 701
            + CL NF GMD T DK+ S+V+KW T+IEA++DVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+         ++ G K+ER
Sbjct:   94 KNCLINFHGMDLTRDKMCSMVKKWQTMIEAHIDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMVEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGSGKPSGDETGAKVER 252          

HSP 2 Score: 25.0238 bits (53), Expect = 8.046e-48
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK +L  EDVQGKN
Sbjct:   81 FRKFKLITEDVQGKN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_BABBO (40S ribosomal protein S3a OS=Babesia bovis GN=BBOV_III001480 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.046e-48
Identity = 89/145 (61.38%), Postives = 113/145 (77.93%), Query Frame = -3
Query:  261 CLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 695
            CLTNF G   T DKL SL+RK ++LIEA+ DVKTTD YTLRMFCIG+TKR P Q+K TCY ++S+ R +RRKM E+M  +A++  ++ +V+K I E IG+EIEKA  S++PLQNV IRK+K+LK PKFDL KLMEVH D SE+ G
Sbjct:   96 CLTNFHGTSVTRDKLCSLIRKNYSLIEAFTDVKTTDGYTLRMFCIGYTKRRPGQLKSTCYIRSSRTRVVRRKMIEVMQREASTTSMREVVKKIIPESIGKEIEKACKSVFPLQNVLIRKIKVLKKPKFDLTKLMEVHTDISEETG 240          

HSP 2 Score: 26.5646 bits (57), Expect = 8.046e-48
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            YRKI+L  ED+QG+N
Sbjct:   81 YRKIKLCCEDIQGRN 95          
The following BLAST results are available for this feature:
BLAST of CX296740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
RS3A_PICGU9.663e-4962.8440S ribosomal protein S1 OS=Pichia guilliermondii ... [more]
RS3A_DANRE1.259e-4853.7640S ribosomal protein S3a OS=Danio rerio GN=rps3a ... [more]
RS3A_EIMTE1.259e-4856.6040S ribosomal protein S3a OS=Eimeria tenella PE=2 ... [more]
RS3AA_XENLA1.641e-4856.6040S ribosomal protein S3a-A OS=Xenopus laevis GN=r... [more]
RS3A_CALJA2.139e-4857.2340S ribosomal protein S3a OS=Callithrix jacchus GN... [more]
RS3AB_XENLA2.788e-4856.6040S ribosomal protein S3a-B OS=Xenopus laevis GN=r... [more]
RS3A_CANTT3.635e-4860.8140S ribosomal protein S1 OS=Candida tropicalis (st... [more]
RS3A2_SCHPO6.176e-4861.3340S ribosomal protein S1-B OS=Schizosaccharomyces ... [more]
RS3A_OPHHA8.046e-4855.3540S ribosomal protein S3a OS=Ophiophagus hannah GN... [more]
RS3A_BABBO8.046e-4861.3840S ribosomal protein S3a OS=Babesia bovis GN=BBOV... [more]

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Properties
Property NameValue
Genbank descriptionC05802C06SK FerrChloL1 Citrus clementina cDNA clone C05802C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296740 ID=CX296740; Name=CX296740; organism=Citrus clementina; type=EST; length=757bp
CCGAATTCGGCACGAGGCTGGAATAAAGAATAAGGTAATCATGTTCATAC
CACAGAAACCGCTGCAGCCATCTCAAATATCAGCTAGAATAAAATATGTA
AACTCAAAACAAATTTGAGTTCATCACAAACAAAACTGCCCAAAAATTAC
TAGATCTGATTGGTTATAAAGACAAACTACAAAAATTTCTTTATTCAAGC
TCCAATCACTTCAGTTGGTGCTTCAGGAATGGGCTCATCAGCTGGCCTTT
CCATCTTTACACCAACATCCTCAGAGTAATCACCATGAACCTCCATCAAC
TTTCCAAGATCAAACTTAGGAGCTTTCAAGATCTTCACTTTGCGAATGAA
AACATTTTGTAAGGGGTATATGCTTAAGGTTGCCTTCTCAATCTCTCTTC
CAATTATTTCAGCAATGAACTTTTCGACCAAGCCCTTAAGATCACAGGAT
GCTGCCTGAGCAATCATGATCTCCCTCATCTTGCGGCGAATCTGTCTAAT
CTGGCTGGCCTGTGCGTAGCAAGTCCTCTTAACCTGATTTGGAAGTCTCT
TGGTGAATCCAATGCAGAACATCCTCAATGTGTAGTTATCAGTGGTCTTG
ACATCCACGTAAGCTTCAATCAACGTATGCCACTTCCTAACCAAGGACCT
CAGCTTGTCTGTAGTGAAATCCATGCCCCAGAAGTTTGTCAAACATTCTT
CCCTTGGACATCTTCAGCTCTTAGTCTGATCTTCCTGTAGCATGCTCTTC
TTCATAT
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