CX296740

Overview
NameCX296740
Unique NameCX296740
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig928 contig Ccv1_Contig928:282..1039. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A1_SCHPO (40S ribosomal protein S1-A OS=Schizosaccharomyces pombe GN=rps101 PE=2 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 1.782e-47
Identity = 93/150 (62.00%), Postives = 115/150 (76.67%), Query Frame = -3
Query:  252 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKM 701
            + CLT+F G D T+DKLRSLVRKW + IEA   +KTTD Y  R+F IGFT R  NQVK+T YAQ+SQIR I +KM +++  QA  C +K LV+K I E+IGR IEKAT +IYPLQNVF+RKVKILKAPK D  KL+E+HG+ S+DVG K+
Sbjct:   94 KSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDAQKLLELHGE-SQDVGSKV 242          

HSP 2 Score: 26.9498 bits (58), Expect = 1.782e-47
Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK++LR ED+QGK+
Sbjct:   81 FRKVKLRVEDIQGKS 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_PLAVI (40S ribosomal protein S3a OS=Plasmodium vivax GN=PVX_095080 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.188e-47
Identity = 97/171 (56.73%), Postives = 121/171 (70.76%), Query Frame = -3
Query:  189 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAPTEVIGA*IK 701
            ++C T+F G+  T DKL SL+RK +TLIE Y DVKT DNY LRMFCI FTK+ PNQ K TCYAQ SQI++IR+KM +IM A+A+   LK LV+KFI E IG+E+EK    IYPLQNV IRKVKILK PK D+ KLME+H D  ED G  ++     P  +  T ++ A +K
Sbjct:   94 KDCYTDFCGLSITRDKLCSLIRKGYTLIEGYTDVKTIDNYQLRMFCIAFTKKRPNQTKTTCYAQTSQIKKIRKKMVDIMNAEASKVMLKDLVKKFIPESIGKEVEKQCKKIYPLQNVLIRKVKILKRPKLDISKLMELHTDSKEDAGKNVK---SLPESKEATNILSAELK 261          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_PLAKH (40S ribosomal protein S3a OS=Plasmodium knowlesi (strain H) GN=PKH_081740 PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.858e-47
Identity = 97/171 (56.73%), Postives = 121/171 (70.76%), Query Frame = -3
Query:  189 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAPTEVIGA*IK 701
            ++C T+F G+  T DKL SL+RK +TLIE Y DVKT DNY LRMFCI FTK+ PNQ K TCYAQ SQI++IR+KM +IM A+A+   LK LV+KFI E IG+E+EK    IYPLQNV IRKVKILK PK D+ KLME+H D  ED G  ++     P  +  T ++ A +K
Sbjct:   94 KDCYTDFCGLSITRDKLCSLIRKGYTLIEGYTDVKTIDNYQLRMFCIAFTKKRPNQTKTTCYAQTSQIKKIRKKMVDIMNAEASKVLLKDLVKKFIPESIGKEVEKQCKKIYPLQNVLIRKVKILKRPKLDISKLMELHTDSKEDAGKNVK---SLPESKEATNILSAELK 261          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A2_DEBHA (40S ribosomal protein S1-B OS=Debaryomyces hansenii GN=RPS1B PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.945e-47
Identity = 91/159 (57.23%), Postives = 121/159 (76.10%), Query Frame = -3
Query:  219 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 692
            LTNF G+DFTTDKLRSLVRKW +L+EA V VKT+D+Y LR+F I FTKR  NQ+++T YAQ+S++R++R+KM EIM  + ++C L  L  K I E+IGREIEK+T +I PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E+ G K+     + + EA
Sbjct:   97 LTNFHGIDFTTDKLRSLVRKWQSLVEANVTVKTSDDYVLRIFAIAFTKRQANQIRKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKVSAGFKDVVLEA 255          

HSP 2 Score: 25.7942 bits (55), Expect = 3.945e-47
Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = -1
Query:  692 RKIRLRAEDVQGKNV 736
            RK++LR ++VQGKN+
Sbjct:   82 RKVKLRVDEVQGKNL 96          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_SCHJY (40S ribosomal protein S1 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=rps1 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.946e-47
Identity = 92/148 (62.16%), Postives = 114/148 (77.03%), Query Frame = -3
Query:  252 CLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKM 695
            CLT F GM  T+DKLRSLVRKW T IEA   +KTTD Y  R+F IGFT+R  NQ+K+T YAQ+SQIR IR+KM +++  QA  C ++ LV+K I EIIGREIEKAT  I+PLQNVF+RKVKILK+PK D  KL+E HG+ ++DVG K+
Sbjct:   96 CLTTFNGMSMTSDKLRSLVRKWQTTIEADQTIKTTDGYVCRIFVIGFTRRRYNQIKKTTYAQSSQIRAIRQKMFQVIQNQATGCSMRELVQKLIPEIIGREIEKATGGIFPLQNVFVRKVKILKSPKLDAQKLLEQHGE-AQDVGTKV 242          

HSP 2 Score: 25.7942 bits (55), Expect = 3.946e-47
Identity = 9/14 (64.29%), Postives = 13/14 (92.86%), Query Frame = -1
Query:  698 YRKIRLRAEDVQGK 739
            +RK++LR +DVQGK
Sbjct:   81 FRKVKLRVDDVQGK 94          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A2_PICST (40S ribosomal protein S1-B OS=Pichia stipitis GN=RPS1B PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 5.141e-47
Identity = 89/148 (60.14%), Postives = 117/148 (79.05%), Query Frame = -3
Query:  252 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 692
            LTNF G+DFT+DKLRSLVRKW +L+EA V VKT+D+Y LR+F I FTKR  NQ+K+T YAQ+S++R++R+KM EIM  + ++  L  L  K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G K+
Sbjct:   97 LTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQANQIKKTTYAQSSKLREVRKKMIEIMQREVSNVTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGALLALHGEGSTEEKGKKV 244          

HSP 2 Score: 28.8758 bits (63), Expect = 5.141e-47
Identity = 11/16 (68.75%), Postives = 15/16 (93.75%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            YRKI+LR ++VQGKN+
Sbjct:   81 YRKIKLRVDEVQGKNL 96          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A1_DEBHA (40S ribosomal protein S1-A OS=Debaryomyces hansenii GN=RPS1A PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 8.733e-47
Identity = 89/148 (60.14%), Postives = 117/148 (79.05%), Query Frame = -3
Query:  252 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 692
            LTNF G+DFTTDKLRSLVRKW +L+EA V VKT+D+Y LR+F I FTKR  NQ+++T YAQ+S++R++R+KM EIM  + ++C L  L  K I E+IGREIEK+T +I PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E+ G K+
Sbjct:   97 LTNFHGIDFTTDKLRSLVRKWQSLVEANVTVKTSDDYVLRIFAIAFTKRQANQIRKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          

HSP 2 Score: 25.7942 bits (55), Expect = 8.733e-47
Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = -1
Query:  692 RKIRLRAEDVQGKNV 736
            RK++LR ++VQGKN+
Sbjct:   82 RKVKLRVDEVQGKNL 96          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A2_CLAL4 (40S ribosomal protein S1-B OS=Clavispora lusitaniae (strain ATCC 42720) GN=RPS1B PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 8.733e-47
Identity = 90/148 (60.81%), Postives = 115/148 (77.70%), Query Frame = -3
Query:  252 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 692
            LTNF G+DFT+DKLRSLVRKW +L+EA V VKT D+Y LR+F I FTKR  NQVK+T YAQ+S++R++R+KM EIM  + ++  L  L  K I E+IGREIEK+T SI PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E+ G K+
Sbjct:   97 LTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTADDYVLRVFAIAFTKRQANQVKKTTYAQSSKLREVRKKMIEIMQREVSNVTLAQLTSKLIPEVIGREIEKSTQSILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          

HSP 2 Score: 28.4906 bits (62), Expect = 8.733e-47
Identity = 10/16 (62.50%), Postives = 15/16 (93.75%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            YRK++LR ++VQGKN+
Sbjct:   81 YRKVKLRVDEVQGKNL 96          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A1_CLAL4 (40S ribosomal protein S1-A OS=Clavispora lusitaniae (strain ATCC 42720) GN=RPS1A PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 8.733e-47
Identity = 90/148 (60.81%), Postives = 115/148 (77.70%), Query Frame = -3
Query:  252 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 692
            LTNF G+DFT+DKLRSLVRKW +L+EA V VKT D+Y LR+F I FTKR  NQVK+T YAQ+S++R++R+KM EIM  + ++  L  L  K I E+IGREIEK+T SI PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E+ G K+
Sbjct:   97 LTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTADDYVLRVFAIAFTKRQANQVKKTTYAQSSKLREVRKKMIEIMQREVSNVTLAQLTSKLIPEVIGREIEKSTQSILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          

HSP 2 Score: 28.4906 bits (62), Expect = 8.733e-47
Identity = 10/16 (62.50%), Postives = 15/16 (93.75%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            YRK++LR ++VQGKN+
Sbjct:   81 YRKVKLRVDEVQGKNL 96          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_PERAM (40S ribosomal protein S3a OS=Periplaneta americana GN=Parcxpwex01 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.483e-46
Identity = 89/162 (54.94%), Postives = 118/162 (72.84%), Query Frame = -3
Query:  222 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKMERPA--DEPIPE 692
            LTNF GMD TTDKLRS+V+KW TLIEA VDVKTTD Y LR+FCIGFT +     ++TCYAQ +Q+R IR+KM EI+     S DLK +V K + + I ++IEKA   IYPL +V+IRKVK+LK P+F+L KL+E+HGD    S++ G +++RP   + P+ E
Sbjct:  100 LTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRVFCIGFTNKDQMSQRKTCYAQHTQVRAIRKKMVEIITRDVTSSDLKEVVNKLLPDSIAKDIEKACQGIYPLHDVYIRKVKVLKKPRFELSKLLELHGDGKGGSDEPGARVDRPEGYEPPVQE 261          

HSP 2 Score: 28.1054 bits (61), Expect = 1.483e-46
Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            +RK RL AEDVQG+NV
Sbjct:   84 FRKFRLIAEDVQGRNV 99          
The following BLAST results are available for this feature:
BLAST of CX296740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
RS3A1_SCHPO1.782e-4762.0040S ribosomal protein S1-A OS=Schizosaccharomyces ... [more]
RS3A_PLAVI2.188e-4756.7340S ribosomal protein S3a OS=Plasmodium vivax GN=P... [more]
RS3A_PLAKH2.858e-4756.7340S ribosomal protein S3a OS=Plasmodium knowlesi (... [more]
RS3A2_DEBHA3.945e-4757.2340S ribosomal protein S1-B OS=Debaryomyces hanseni... [more]
RS3A_SCHJY3.946e-4762.1640S ribosomal protein S1 OS=Schizosaccharomyces ja... [more]
RS3A2_PICST5.141e-4760.1440S ribosomal protein S1-B OS=Pichia stipitis GN=R... [more]
RS3A1_DEBHA8.733e-4760.1440S ribosomal protein S1-A OS=Debaryomyces hanseni... [more]
RS3A2_CLAL48.733e-4760.8140S ribosomal protein S1-B OS=Clavispora lusitania... [more]
RS3A1_CLAL48.733e-4760.8140S ribosomal protein S1-A OS=Clavispora lusitania... [more]
RS3A_PERAM1.483e-4654.9440S ribosomal protein S3a OS=Periplaneta americana... [more]

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Properties
Property NameValue
Genbank descriptionC05802C06SK FerrChloL1 Citrus clementina cDNA clone C05802C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296740 ID=CX296740; Name=CX296740; organism=Citrus clementina; type=EST; length=757bp
CCGAATTCGGCACGAGGCTGGAATAAAGAATAAGGTAATCATGTTCATAC
CACAGAAACCGCTGCAGCCATCTCAAATATCAGCTAGAATAAAATATGTA
AACTCAAAACAAATTTGAGTTCATCACAAACAAAACTGCCCAAAAATTAC
TAGATCTGATTGGTTATAAAGACAAACTACAAAAATTTCTTTATTCAAGC
TCCAATCACTTCAGTTGGTGCTTCAGGAATGGGCTCATCAGCTGGCCTTT
CCATCTTTACACCAACATCCTCAGAGTAATCACCATGAACCTCCATCAAC
TTTCCAAGATCAAACTTAGGAGCTTTCAAGATCTTCACTTTGCGAATGAA
AACATTTTGTAAGGGGTATATGCTTAAGGTTGCCTTCTCAATCTCTCTTC
CAATTATTTCAGCAATGAACTTTTCGACCAAGCCCTTAAGATCACAGGAT
GCTGCCTGAGCAATCATGATCTCCCTCATCTTGCGGCGAATCTGTCTAAT
CTGGCTGGCCTGTGCGTAGCAAGTCCTCTTAACCTGATTTGGAAGTCTCT
TGGTGAATCCAATGCAGAACATCCTCAATGTGTAGTTATCAGTGGTCTTG
ACATCCACGTAAGCTTCAATCAACGTATGCCACTTCCTAACCAAGGACCT
CAGCTTGTCTGTAGTGAAATCCATGCCCCAGAAGTTTGTCAAACATTCTT
CCCTTGGACATCTTCAGCTCTTAGTCTGATCTTCCTGTAGCATGCTCTTC
TTCATAT
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