CX296740

Overview
NameCX296740
Unique NameCX296740
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig928 contig Ccv1_Contig928:282..1039. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_COCP7 (40S ribosomal protein S1 OS=Coccidioides posadasii (strain C735) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.852e-46
Identity = 106/183 (57.92%), Postives = 130/183 (71.04%), Query Frame = -3
Query:  219 LQEDQTKS*RCPR--------EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 740
            LQ DQ  S R  +        + CLTNF GMDFT+DKLRSLVRKW +LIEA V VKTTD+Y +R+F I FTKR   QVK+T YA++SQIR IR+KM EI+  +A+S  L  L  K + E+IGREIEKAT  IYPLQNV IRKVK+LK PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:   73 LQNDQAHSFRKIKLRVDEVQGKNCLTNFHGMDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLVRLFAIAFTKRRSFQVKKTTYARSSQIRAIRKKMVEIIQREASSRTLTQLT-KLVPEVIGREIEKATRGIYPLQNVHIRKVKLLKQPKFDLGGLLALHGEASTDDKGQKVEREFTEQVLES 254          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_COCIM (40S ribosomal protein S1 OS=Coccidioides immitis GN=RPS1 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.852e-46
Identity = 106/183 (57.92%), Postives = 130/183 (71.04%), Query Frame = -3
Query:  219 LQEDQTKS*RCPR--------EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 740
            LQ DQ  S R  +        + CLTNF GMDFT+DKLRSLVRKW +LIEA V VKTTD+Y +R+F I FTKR   QVK+T YA++SQIR IR+KM EI+  +A+S  L  L  K + E+IGREIEKAT  IYPLQNV IRKVK+LK PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:   73 LQNDQAHSFRKIKLRVDEVQGKNCLTNFHGMDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLVRLFAIAFTKRRSFQVKKTTYARSSQIRAIRKKMVEIIQREASSRTLTQLT-KLVPEVIGREIEKATRGIYPLQNVHIRKVKLLKQPKFDLGGLLALHGEASTDDKGQKVEREFTEQVLES 254          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_UNCRE (40S ribosomal protein S1 OS=Uncinocarpus reesii (strain UAMH 1704) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 5.390e-46
Identity = 104/183 (56.83%), Postives = 130/183 (71.04%), Query Frame = -3
Query:  219 LQEDQTKS*RCPR--------EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 740
            LQ DQ  S R  +        + CLTNF GMDFT+DKLRSLVRKW +LIEA V VKTTD+Y +R+F I FTKR   QVK+T YA++SQIR IR+KM EI+  +A++  L  L  K + E+IGREIEKAT  IYPLQNV IRKVK+LK PKFD+G L+ +HG+ S +D G K+ER   E + E+
Sbjct:   73 LQNDQAHSFRKIKLRVDEVQGKNCLTNFHGMDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLVRLFAIAFTKRRSFQVKKTTYARSSQIRAIRKKMVEIIQREASTRTLTQLT-KLVPEVIGREIEKATRGIYPLQNVHIRKVKLLKQPKFDIGALLALHGESSTDDKGQKVEREFKEQVLES 254          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_ZYGRC (40S ribosomal protein S1 OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / IFO 1130 / NBRC 1623 / NCYC 568) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 5.578e-46
Identity = 86/153 (56.21%), Postives = 109/153 (71.24%), Query Frame = -3
Query:  234 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADE 692
            LTN  GMDFTTDK RS+VRKW TLIEA V VKT+D Y +R+F I FT++ PNQVK+TCYAQ+S IR IR+   EI+  +  +  L     K I E+I +E+E AT  I+PLQNV +RKVK+LK PKFDLG LM +HG+ S++ G K+    DE
Sbjct:   97 LTNIHGMDFTTDKYRSMVRKWQTLIEAQVTVKTSDEYVIRVFAIAFTRKQPNQVKKTCYAQSSHIRAIRKVFSEILTREVQNSTLAQFTSKLIPEVINKEMENATKDIFPLQNVHVRKVKLLKQPKFDLGSLMALHGEGSDETGKKVSGFKDE 249          

HSP 2 Score: 27.335 bits (59), Expect = 5.578e-46
Identity = 10/16 (62.50%), Postives = 15/16 (93.75%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            +RKI+LR ++VQGKN+
Sbjct:   81 FRKIKLRVDEVQGKNL 96          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_KLULA (40S ribosomal protein S1 OS=Kluyveromyces lactis GN=RPS1 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 7.270e-46
Identity = 92/154 (59.74%), Postives = 113/154 (73.38%), Query Frame = -3
Query:  234 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 692
            LTNF GMDFTTDKLRS+VRKW TLIEA V VKT+D+Y LR+F I FT++  NQVKRT YAQ+S IRQIR+ + EI+  +  +  L  L  K I E+I +EIE AT  I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G K+    DE
Sbjct:   97 LTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRTSYAQSSHIRQIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNVHIRKVKLLKQPKFDLGSLLSLHGEASAEEKGKKVAGFKDE 250          

HSP 2 Score: 26.9498 bits (58), Expect = 7.270e-46
Identity = 9/16 (56.25%), Postives = 15/16 (93.75%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            +RK++LR ++VQGKN+
Sbjct:   81 FRKVKLRVDEVQGKNL 96          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_TRIIF (40S ribosomal protein S3a OS=Triatoma infestans PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 9.470e-46
Identity = 88/162 (54.32%), Postives = 120/162 (74.07%), Query Frame = -3
Query:  219 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD--YSEDVGVKMERPA--DEPIPEA 692
            LTNF GMD TTDKLRS+V+KW TLIEA VDV+TTD Y LR+FCIGFT +     ++TCYAQ +Q+RQIRRKM + + +  ++ DL+ +V K I + I ++IEKA   IYPL +V+IRKVK+LK P+F+L KL+E+HGD   S++ G K+ RP   + P+ E+
Sbjct:  100 LTNFHGMDLTTDKLRSMVKKWQTLIEANVDVRTTDGYLLRVFCIGFTNKDQLSQRKTCYAQHTQVRQIRRKMVDNITSSISNSDLRVVVNKLIPDSIAKDIEKACQGIYPLHDVYIRKVKVLKKPRFELSKLLELHGDGKGSDEPGAKVSRPEAYEPPVQES 261          

HSP 2 Score: 27.335 bits (59), Expect = 9.470e-46
Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            YRK RL AEDVQ +NV
Sbjct:   84 YRKFRLIAEDVQARNV 99          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_LODEL (40S ribosomal protein S1 OS=Lodderomyces elongisporus GN=RPS1 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.201e-45
Identity = 92/167 (55.09%), Postives = 123/167 (73.65%), Query Frame = -3
Query:  252 KKSMLQEDQTKS*RCPREECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKM 752
            +K  L+ D+ +       + LTNF GMDFT+DKLRSLVRKW +L+EA V VKT D+Y LR+F I FTKR  NQVK+T YAQ+S++R++R+KM EI+  + ++  L  L  K I E+I REIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ SE+ G K+
Sbjct:   69 RKVKLRADEVQG-----NKILTNFHGMDFTSDKLRSLVRKWQSLVEANVTVKTADDYVLRVFAIAFTKRQANQVKKTTYAQSSKLREVRKKMVEILTREVSNSTLSQLTSKLIPEVISREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEASEEKGKKV 230          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_CRYHO (40S ribosomal protein S3a OS=Cryptosporidium hominis GN=Chro.40360 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.234e-45
Identity = 91/150 (60.67%), Postives = 113/150 (75.33%), Query Frame = -3
Query:  252 CLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVH--GDYSEDVGVKM 695
            CLT F GMD T DKL SL+RK+ TLIEA+ +VKT+D Y LR+FCI FT+R+ +QVK TCYAQ SQIRQIR+KM EI+ A+A    L+ LV+KFI E IG+EIEKA   I+PLQ+VFIRKVK+L  P FD+ +LME H   D  E+ G K+
Sbjct:   96 CLTEFHGMDMTRDKLCSLIRKYQTLIEAHCNVKTSDGYVLRLFCIAFTRRMADQVKSTCYAQTSQIRQIRKKMVEIITAEAEGTTLRDLVKKFIPESIGKEIEKACRHIFPLQHVFIRKVKVLSKPSFDVSRLMESHVGADGVEEKGTKV 245          

HSP 2 Score: 24.2534 bits (51), Expect = 1.234e-45
Identity = 8/14 (57.14%), Postives = 13/14 (92.86%), Query Frame = -1
Query:  698 YRKIRLRAEDVQGK 739
            +RKI+L+ ED+QG+
Sbjct:   81 FRKIKLQCEDIQGR 94          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A1_PICST (40S ribosomal protein S1-A OS=Pichia stipitis GN=RPS1A PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.733e-45
Identity = 84/138 (60.87%), Postives = 109/138 (78.99%), Query Frame = -3
Query:  279 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 692
            LTNF G+ FT+DKLRSLVRKW +L+EA V VKT D+Y LR+F + FTKR  NQVK+T YAQ+S++R++R+KM EIM  + ++  L  L  K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+
Sbjct:   97 LTNFHGLSFTSDKLRSLVRKWQSLVEANVTVKTADDYVLRVFALAFTKRQANQVKKTTYAQSSKLREVRKKMSEIMQREVSAVTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKVLKQPKFDLGALLALHGE 234          

HSP 2 Score: 26.5646 bits (57), Expect = 2.733e-45
Identity = 9/16 (56.25%), Postives = 14/16 (87.50%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            YR ++LR ++VQGKN+
Sbjct:   81 YRNVKLRVDEVQGKNL 96          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_ARTSF (40S ribosomal protein S3a OS=Artemia sanfranciscana PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.559e-45
Identity = 91/168 (54.17%), Postives = 120/168 (71.43%), Query Frame = -3
Query:  219 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD--------YSEDVGVKMERPA--DEPIPEA 692
            LTNF GMDFTTDKLRSLV+KW TLIE  VDVKTTD+Y LR+FCIGFT++     ++TCYAQ +Q+R IR+KM EI+  + +S DLK  V K I + I ++IEK+  SIYP+  V+IRKVK+LK PKFD+GKL+++HG+          +  GV + RP   + PI E+
Sbjct:  100 LTNFHGMDFTTDKLRSLVKKWQTLIECSVDVKTTDSYLLRVFCIGFTQKDQRSQRKTCYAQHTQVRAIRKKMTEIITKEISSGDLKEAVSKLIPDSIAKDIEKSCHSIYPIHEVYIRKVKVLKKPKFDMGKLLDMHGEGAVTKRVTTEDGTGVVISRPEGYEPPIQES 267          

HSP 2 Score: 22.7126 bits (47), Expect = 3.559e-45
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = -1
Query:  698 YRKIRLRAEDVQGK 739
            +RK RL AE+VQG+
Sbjct:   84 FRKFRLIAEEVQGR 97          
The following BLAST results are available for this feature:
BLAST of CX296740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
RS3A_COCP71.852e-4657.9240S ribosomal protein S1 OS=Coccidioides posadasii... [more]
RS3A_COCIM1.852e-4657.9240S ribosomal protein S1 OS=Coccidioides immitis G... [more]
RS3A_UNCRE5.390e-4656.8340S ribosomal protein S1 OS=Uncinocarpus reesii (s... [more]
RS3A_ZYGRC5.578e-4656.2140S ribosomal protein S1 OS=Zygosaccharomyces roux... [more]
RS3A_KLULA7.270e-4659.7440S ribosomal protein S1 OS=Kluyveromyces lactis G... [more]
RS3A_TRIIF9.470e-4654.3240S ribosomal protein S3a OS=Triatoma infestans PE... [more]
RS3A_LODEL1.201e-4555.0940S ribosomal protein S1 OS=Lodderomyces elongispo... [more]
RS3A_CRYHO1.234e-4560.6740S ribosomal protein S3a OS=Cryptosporidium homin... [more]
RS3A1_PICST2.733e-4560.8740S ribosomal protein S1-A OS=Pichia stipitis GN=R... [more]
RS3A_ARTSF3.559e-4554.1740S ribosomal protein S3a OS=Artemia sanfranciscan... [more]

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Properties
Property NameValue
Genbank descriptionC05802C06SK FerrChloL1 Citrus clementina cDNA clone C05802C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296740 ID=CX296740; Name=CX296740; organism=Citrus clementina; type=EST; length=757bp
CCGAATTCGGCACGAGGCTGGAATAAAGAATAAGGTAATCATGTTCATAC
CACAGAAACCGCTGCAGCCATCTCAAATATCAGCTAGAATAAAATATGTA
AACTCAAAACAAATTTGAGTTCATCACAAACAAAACTGCCCAAAAATTAC
TAGATCTGATTGGTTATAAAGACAAACTACAAAAATTTCTTTATTCAAGC
TCCAATCACTTCAGTTGGTGCTTCAGGAATGGGCTCATCAGCTGGCCTTT
CCATCTTTACACCAACATCCTCAGAGTAATCACCATGAACCTCCATCAAC
TTTCCAAGATCAAACTTAGGAGCTTTCAAGATCTTCACTTTGCGAATGAA
AACATTTTGTAAGGGGTATATGCTTAAGGTTGCCTTCTCAATCTCTCTTC
CAATTATTTCAGCAATGAACTTTTCGACCAAGCCCTTAAGATCACAGGAT
GCTGCCTGAGCAATCATGATCTCCCTCATCTTGCGGCGAATCTGTCTAAT
CTGGCTGGCCTGTGCGTAGCAAGTCCTCTTAACCTGATTTGGAAGTCTCT
TGGTGAATCCAATGCAGAACATCCTCAATGTGTAGTTATCAGTGGTCTTG
ACATCCACGTAAGCTTCAATCAACGTATGCCACTTCCTAACCAAGGACCT
CAGCTTGTCTGTAGTGAAATCCATGCCCCAGAAGTTTGTCAAACATTCTT
CCCTTGGACATCTTCAGCTCTTAGTCTGATCTTCCTGTAGCATGCTCTTC
TTCATAT
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