CX296750

Overview
NameCX296750
Unique NameCX296750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length582
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4958 contig Ccv1_Contig4958:410..991. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HS71B_BOSMU (Heat shock 70 kDa protein 1B OS=Bos mutus grunniens GN=HSPA1B PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.859e-20
Identity = 60/176 (34.09%), Postives = 99/176 (56.25%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGED 566
            +F+ KRLIGR   DPVV +  K  PF V  ++ G +P +        ++  PEE+ ++ L +++ +AE  L  P+ N V+T+P  F+  Q    + A  +AGL+VLR++ EPTA A+ Y         +  G G E+  +IF++G G  DV++     G+ +++A +G   +GGED
Sbjct:   67 VFDAKRLIGRKFGDPVVQSDMKHWPFRV--INDGDKPKVQVSYKGETKAFYPEEISSMVLTKMKEIAEAYLGHPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGL-------DRTGKG-ERNVLIFDLGGGTFDVSILTIDDGIFEVEATAGDTHLGGED 232          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HS71A_PIG (Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA1A PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.859e-20
Identity = 61/176 (34.66%), Postives = 97/176 (55.11%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGED 566
            +F+ KRLIGR   DPVV    K  PF V  ++ G +P +        +   PEE+ ++ L +++ +AE  L  P+ N V+T+P  F+  Q    + A  +AGL+VLR++ EPTA A+ Y         +  G G E+  +IF++G G  DV++     G+ ++KA +G   +GGED
Sbjct:   67 VFDAKRLIGRKFGDPVVQGDMKHWPFRV--INDGDKPKVQVSYKGETKGFYPEEISSMVLTKMKEIAEGYLGHPVSNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGL-------DRTGKG-ERNVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGED 232          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSP75_ASHGO (Heat shock protein SSB OS=Ashbya gossypii GN=SSB PE=3 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 8.958e-20
Identity = 63/184 (34.24%), Postives = 103/184 (55.98%), Query Frame = 3
Query:   45 IFNMKRLIGR-VDTDPVVHASKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSG---SEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNM 581
            +F+ KRLIGR  D + V    K+ PF V  +D    P I        +S +P+E+ A+ L +++ +AE ++ + +   V+T+P  F+  Q    + A A+AGL+VLR++ EPTA A+ Y           LG+G    E+  +IF++G G  DV++   AGGV  +K+ SG+  +GG+D   N+
Sbjct:   69 VFDAKRLIGRRFDDESVQSDMKTWPFKV--IDANGSPMIEVEYLGETKSFSPQEISAMVLTKMKEIAEAKIGKKVEKAVITVPAYFNDAQRQATKDAGAIAGLNVLRIINEPTAAAIAY----------GLGAGKSEKERHVLIFDLGGGTFDVSLLNIAGGVYTVKSTSGNTHLGGQDFDTNL 240          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSP74_TRYBB (Heat shock 70 kDa protein 4 OS=Trypanosoma brucei brucei PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 8.958e-20
Identity = 60/176 (34.09%), Postives = 97/176 (55.11%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGED 566
            +F+ KRLIGR  +D VV +  K  PF V T     +P I        ++  PEE+ ++ L++++ +AE+ L + +   V+T+P  F+  Q    + A  +AGL VLR++ EPTA A+ Y         +    G E+  +IF++G G  DVT+    GG+ ++KA +G   +GGED
Sbjct:   67 VFDAKRLIGRKFSDSVVQSDMKHWPFKVVTKGDD-KPVIQVQFRGETKTFNPEEISSMVLLKMKEVAESYLGKQVAKAVVTVPAYFNDSQRQATKDAGTIAGLEVLRIINEPTAAAIAYGL-------DKADEGKERNVLIFDLGGGTFDVTLLTIDGGIFEVKATNGDTHLGGED 234          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: GRP78_KLULA (78 kDa glucose-regulated protein homolog OS=Kluyveromyces lactis GN=GRP78 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.170e-19
Identity = 58/176 (32.95%), Postives = 98/176 (55.68%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGED 566
            IF++KRLIG    DP V    K LP+ V  V+ G +P++   V    +  TPEEV  + L +++ +AE  L + + + V+T+P  F+  Q    + A A+AGL++LR++ EPTA A+ Y        H+          +++++G G  DV++ +   GV +++A +G   +GGED
Sbjct:  114 IFDIKRLIGLQYNDPTVQRDIKHLPYTV--VNKGNKPYVEVTVKGEKKEFTPEEVSGMILGKMKQIAEDYLGKKVTHAVVTVPAYFNDAQRQATKDAGAIAGLNILRIVNEPTAAAIAYGLDKTEDEHQ---------IIVYDLGGGTFDVSLLSIENGVFEVQATAGDTHLGGED 278          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSP76_YEAST (Heat shock protein SSB2 OS=Saccharomyces cerevisiae GN=SSB2 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.528e-19
Identity = 61/184 (33.15%), Postives = 104/184 (56.52%), Query Frame = 3
Query:   45 IFNMKRLIGR-VDTDPVVHASKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSG---SEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNM 581
            +F+ KRLIGR  D + V    K+ PF V  +D+   P I        ++ +P+E+ A+ L +++ +AE ++ + +   V+T+P  F+  Q    + A A++GL+VLR++ EPTA A+ Y           LG+G    E+  +IF++G G  DV++   AGGV  +K+ SG+  +GG+D   N+
Sbjct:   69 VFDAKRLIGRRFDDESVQKDMKTWPFKV--IDVDGNPVIEVQYLEETKTFSPQEISAMVLTKMKEIAEAKIGKKVEKAVITVPAYFNDAQRQATKDAGAISGLNVLRIINEPTAAAIAY----------GLGAGKSEKERHVLIFDLGGGTFDVSLLHIAGGVYTVKSTSGNTHLGGQDFDTNL 240          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSP75_YEAST (Heat shock protein SSB1 OS=Saccharomyces cerevisiae GN=SSB1 PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 1.528e-19
Identity = 61/184 (33.15%), Postives = 104/184 (56.52%), Query Frame = 3
Query:   45 IFNMKRLIGR-VDTDPVVHASKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSG---SEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNM 581
            +F+ KRLIGR  D + V    K+ PF V  +D+   P I        ++ +P+E+ A+ L +++ +AE ++ + +   V+T+P  F+  Q    + A A++GL+VLR++ EPTA A+ Y           LG+G    E+  +IF++G G  DV++   AGGV  +K+ SG+  +GG+D   N+
Sbjct:   69 VFDAKRLIGRRFDDESVQKDMKTWPFKV--IDVDGNPVIEVQYLEETKTFSPQEISAMVLTKMKEIAEAKIGKKVEKAVITVPAYFNDAQRQATKDAGAISGLNVLRIINEPTAAAIAY----------GLGAGKSEKERHVLIFDLGGGTFDVSLLHIAGGVYTVKSTSGNTHLGGQDFDTNL 240          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSP76_HUMAN (Heat shock 70 kDa protein 6 OS=Homo sapiens GN=HSPA6 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.996e-19
Identity = 62/176 (35.23%), Postives = 100/176 (56.82%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGED 566
            +F+ KRLIGR   D  V +  K  PF V  V  G +P +        ++  PEE+ ++ L +++  AE  L +P+++ V+T+P  F+  Q    + A A+AGL+VLR++ EPTA A+ Y         +  G+G E+  +IF++G G  DV+V +   GV ++KA +G   +GGED
Sbjct:   69 VFDAKRLIGRKFADTTVQSDMKHWPFRV--VSEGGKPKVRVCYRGEDKTFYPEEISSMVLSKMKETAEAYLGQPVKHAVITVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGL-------DRRGAG-ERNVLIFDLGGGTFDVSVLSIDAGVFEVKATAGDTHLGGED 234          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HS71L_RAT (Heat shock 70 kDa protein 1-like OS=Rattus norvegicus GN=Hspa1l PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.996e-19
Identity = 59/176 (33.52%), Postives = 96/176 (54.55%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHASKSL-PFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGED 566
            +F+ KRLIGR   DPVV +   L PF  Q ++   +P +        ++  PEE+ ++ L +++  AE  L   + N V+T+P  F+  Q    + A  +AGL+VLR++ EPTA A+ Y          + GS  E+  +IF++G G  DV++     G+ ++KA +G   +GGED
Sbjct:   69 VFDAKRLIGRKFNDPVVQSDMKLWPF--QVINEAGKPKVLVSYKGEKKAFYPEEISSMVLTKMKETAEAFLGHSVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGL--------DKGSHGERHVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGED 234          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HS71L_BOVIN (Heat shock 70 kDa protein 1-like OS=Bos taurus GN=HSPA1L PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.996e-19
Identity = 61/176 (34.66%), Postives = 97/176 (55.11%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHASKSL-PFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGED 566
            +F+ KRLIGR   DPVV +   L PF  Q ++ G +P +        ++  PEE+ ++ L +++  AE  L   + N V+T+P  F+  Q    + A  +AGL+VLR++ EPTA A+ Y         +  G G E+  +IF++G G  DV+V     G+ ++KA +G   +GGED
Sbjct:   69 VFDAKRLIGRKFNDPVVQSDMKLWPF--QVINEGGKPKVMVSYKGEKKAFYPEEISSMVLTKMKETAEAFLGYTVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGL-------DKAGQG-ERHVLIFDLGGGTFDVSVLTIDDGIFEVKATAGDTHLGGED 234          
The following BLAST results are available for this feature:
BLAST of CX296750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HS71B_BOSMU6.859e-2034.09Heat shock 70 kDa protein 1B OS=Bos mutus grunnien... [more]
HS71A_PIG6.859e-2034.66Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA... [more]
HSP75_ASHGO8.958e-2034.24Heat shock protein SSB OS=Ashbya gossypii GN=SSB P... [more]
HSP74_TRYBB8.958e-2034.09Heat shock 70 kDa protein 4 OS=Trypanosoma brucei ... [more]
GRP78_KLULA1.170e-1932.9578 kDa glucose-regulated protein homolog OS=Kluyve... [more]
HSP76_YEAST1.528e-1933.15Heat shock protein SSB2 OS=Saccharomyces cerevisia... [more]
HSP75_YEAST1.528e-1933.15Heat shock protein SSB1 OS=Saccharomyces cerevisia... [more]
HSP76_HUMAN1.996e-1935.23Heat shock 70 kDa protein 6 OS=Homo sapiens GN=HSP... [more]
HS71L_RAT1.996e-1933.52Heat shock 70 kDa protein 1-like OS=Rattus norvegi... [more]
HS71L_BOVIN1.996e-1934.66Heat shock 70 kDa protein 1-like OS=Bos taurus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC05802D04SK FerrChloL1 Citrus clementina cDNA clone C05802D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296750 ID=CX296750; Name=CX296750; organism=Citrus clementina; type=EST; length=582bp
GAGGCTCACTCTCCCATGAACATGAAATGTTATCTGGAGCTGCTATTTTC
AACATGAAACGCTTAATCGGCAGAGTTGACACCGATCCTGTGGTCCATGC
AAGCAAAAGCTTACCGTTTTTGGTCCAAACCGTGGACATTGGTGTTCGTC
CATTTATTGCAGCCTTAGTGAACAATGCGTGGAGATCCACCACTCCCGAA
GAAGTCCTGGCAATATTTTTGGTGGAACTAAGAGCCATGGCTGAAACTCA
GTTGAAACGCCCAATAAGAAATGTTGTTCTAACCATTCCAGTTTCATTCA
GTCGTTTCCAACTGACACGCATTGAACGAGCATGTGCTATGGCTGGCCTT
CATGTCCTCAGACTTATGCCTGAACCAACTGCTGTAGCTCTATTGTATGC
TCAGCAGCAGCAACAGAGTGTGCATGAGAATTTGGGCAGTGGAAGTGAGA
AGATTGCGGTCATTTTCAATATGGGTGCTGGGTACTGTGATGTCACTGTG
AGTGCTACAGCTGGAGGAGTTTCACAGATTAAAGCTTTATCAGGAAGTGC
TATTGGAGGAGAGGATTTACTTCAGAATATGA
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