CX296750

Overview
NameCX296750
Unique NameCX296750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length582
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4958 contig Ccv1_Contig4958:410..991. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: GRP78_XENLA (78 kDa glucose-regulated protein OS=Xenopus laevis GN=hspa5 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.996e-19
Identity = 60/181 (33.15%), Postives = 98/181 (54.14%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNM 581
            +F+ KRLIGR   DP V    K LPF V  ++   +P+I   + +  ++  PEE+ A+ LV+++  AE  L R + + V+T+P  F+  Q    + A  +AGL+V+R++ EPTA A+ Y                EK  ++F++G G  DV++     GV ++ A +G   +GGED  Q +
Sbjct:   94 VFDAKRLIGRTWNDPSVQQDIKYLPFKV--IEKKTKPYIEVDIGDQMKTFAPEEISAMVLVKMKETAEAYLGRKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGLDK---------KEGEKNILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRV 263          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSP7C_CAEEL (Heat shock 70 kDa protein C OS=Caenorhabditis elegans GN=hsp-3 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.606e-19
Identity = 62/181 (34.25%), Postives = 99/181 (54.70%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNM 581
            IF+ KRLIGR   D  V A  K  PF V  +D   +P +   V +  +  TPEEV A+ LV+++ +AE+ L + ++N V+T+P  F+  Q    + A  +AGL+V+R++ EPTA A+ Y                E+  ++F++G G  DV++     GV ++ A +G   +GGED  Q +
Sbjct:   98 IFDAKRLIGRDYNDKTVQADIKHWPFKV--IDKSNKPSVEVKVGSDNKQFTPEEVSAMVLVKMKEIAESYLGKEVKNAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGLDK---------KDGERNILVFDLGGGTFDVSMLTIDNGVFEVLATNGDTHLGGEDFDQRV 267          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSP71_ORYLA (Heat shock 70 kDa protein 1 OS=Oryzias latipes PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.606e-19
Identity = 62/181 (34.25%), Postives = 97/181 (53.59%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNM 581
            +F+ KRLIGR   +PVV A  K  PF V  V  G +P I        ++  PEE+ ++ LV+++ +AE  L   + N V+T+P  F+  Q    + A  +AGL+V R++ EPTA A+ Y          + G   E+  +IF++G G  DV++     G+ ++KA +G   +GGED    M
Sbjct:   69 VFDAKRLIGRRFDEPVVQADMKHWPFKV--VSEGGKPKIQVDYKGENKTFFPEEISSMVLVKMKEIAEAYLGHKVSNAVITVPAYFNDSQRQATKDAGVIAGLNVQRIINEPTAAAIAYGL--------DKGKSGERNVLIFDLGGGTFDVSILTIEDGIFEVKATAGDTHLGGEDFDNRM 239          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSP70_NEUCR (Heat shock 70 kDa protein OS=Neurospora crassa GN=hsps-1 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.606e-19
Identity = 61/176 (34.66%), Postives = 94/176 (53.41%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGED 566
            +F+ KRLIGR  +DP V A  K  PF V  +D G +P I        +  TPEE+ A+ L +++  AE  L   + N V+T+P  F+  Q    + A  +AGL+VLR++ EPTA A+ Y                E+  +IF++G G  DV++     G+ ++K+ +G   +GGED
Sbjct:   65 VFDAKRLIGRKFSDPEVQADMKHFPFKV--IDRGGKPVIQVEFKGETKVFTPEEISAMILQKMKETAEAYLGGTVNNAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDKKVE--------GERNVLIFDLGGGTFDVSLLTIEEGIFEVKSTAGDTHLGGED 230          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HS71L_PIG (Heat shock 70 kDa protein 1-like OS=Sus scrofa GN=HSPA1L PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.606e-19
Identity = 60/176 (34.09%), Postives = 97/176 (55.11%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHASKSL-PFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGED 566
            +F+ KRLIGR   DPVV +   L PF  Q ++ G +P +        ++  PEE+ ++ L +++  AE  L   + N V+T+P  F+  Q    + A  +AGL+VLR++ EPTA A+ Y         +  G G E+  +IF++G G  DV++     G+ ++KA +G   +GGED
Sbjct:   69 VFDAKRLIGRKFNDPVVQSDMKLWPF--QVINEGGKPKVMVSYKGEKKAFYPEEISSMVLTKMKETAEAFLGYTVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGL-------DKAGQG-ERHVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGED 234          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HS71L_MOUSE (Heat shock 70 kDa protein 1-like OS=Mus musculus GN=Hspa1l PE=2 SV=4)

HSP 1 Score: 95.1301 bits (235), Expect = 2.606e-19
Identity = 59/176 (33.52%), Postives = 96/176 (54.55%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHASKSL-PFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGED 566
            +F+ KRLIGR   DPVV +   L PF  Q ++   +P +        ++  PEE+ ++ L +++  AE  L   + N V+T+P  F+  Q    + A  +AGL+VLR++ EPTA A+ Y          + GS  E+  +IF++G G  DV++     G+ ++KA +G   +GGED
Sbjct:   69 VFDAKRLIGRKFNDPVVQSDMKLWPF--QVINEAGKPKVMVSYKGEKKAFYPEEISSMVLTKMKETAEAFLGHNVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGL--------DKGSHGERHVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGED 234          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSP7C_SAGOE (Heat shock cognate 71 kDa protein OS=Saguinus oedipus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.404e-19
Identity = 61/181 (33.70%), Postives = 98/181 (54.14%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNM 581
            +F+ KRLIGR   D VV +  K  PF+V  V+   RP +        +S  PEEV ++ L +++ +AE  L + + N V+T+P  F+  Q    + A  +AGL+VLR++ EPTA A+ Y              G+E+  +IF++G G  DV++     G+ ++K+ +G   +GGED    M
Sbjct:   67 VFDAKRLIGRRFDDAVVQSDMKHWPFMV--VNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKV--------GAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 237          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSP7C_RAT (Heat shock cognate 71 kDa protein OS=Rattus norvegicus GN=Hspa8 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.404e-19
Identity = 61/181 (33.70%), Postives = 98/181 (54.14%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNM 581
            +F+ KRLIGR   D VV +  K  PF+V  V+   RP +        +S  PEEV ++ L +++ +AE  L + + N V+T+P  F+  Q    + A  +AGL+VLR++ EPTA A+ Y              G+E+  +IF++G G  DV++     G+ ++K+ +G   +GGED    M
Sbjct:   67 VFDAKRLIGRRFDDAVVQSDMKHWPFMV--VNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKV--------GAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 237          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSP7C_PONAB (Heat shock cognate 71 kDa protein OS=Pongo abelii GN=HSPA8 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.404e-19
Identity = 61/181 (33.70%), Postives = 98/181 (54.14%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNM 581
            +F+ KRLIGR   D VV +  K  PF+V  V+   RP +        +S  PEEV ++ L +++ +AE  L + + N V+T+P  F+  Q    + A  +AGL+VLR++ EPTA A+ Y              G+E+  +IF++G G  DV++     G+ ++K+ +G   +GGED    M
Sbjct:   67 VFDAKRLIGRRFDDAVVQSDMKHWPFMV--VNDAGRPKVQVEYKGETKSFYPEEVSSMVLAKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKV--------GAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 237          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSP7C_MOUSE (Heat shock cognate 71 kDa protein OS=Mus musculus GN=Hspa8 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.404e-19
Identity = 61/181 (33.70%), Postives = 98/181 (54.14%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNM 581
            +F+ KRLIGR   D VV +  K  PF+V  V+   RP +        +S  PEEV ++ L +++ +AE  L + + N V+T+P  F+  Q    + A  +AGL+VLR++ EPTA A+ Y              G+E+  +IF++G G  DV++     G+ ++K+ +G   +GGED    M
Sbjct:   67 VFDAKRLIGRRFDDAVVQSDMKHWPFMV--VNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKV--------GAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 237          
The following BLAST results are available for this feature:
BLAST of CX296750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GRP78_XENLA1.996e-1933.1578 kDa glucose-regulated protein OS=Xenopus laevis... [more]
HSP7C_CAEEL2.606e-1934.25Heat shock 70 kDa protein C OS=Caenorhabditis eleg... [more]
HSP71_ORYLA2.606e-1934.25Heat shock 70 kDa protein 1 OS=Oryzias latipes PE=... [more]
HSP70_NEUCR2.606e-1934.66Heat shock 70 kDa protein OS=Neurospora crassa GN=... [more]
HS71L_PIG2.606e-1934.09Heat shock 70 kDa protein 1-like OS=Sus scrofa GN=... [more]
HS71L_MOUSE2.606e-1933.52Heat shock 70 kDa protein 1-like OS=Mus musculus G... [more]
HSP7C_SAGOE3.404e-1933.70Heat shock cognate 71 kDa protein OS=Saguinus oedi... [more]
HSP7C_RAT3.404e-1933.70Heat shock cognate 71 kDa protein OS=Rattus norveg... [more]
HSP7C_PONAB3.404e-1933.70Heat shock cognate 71 kDa protein OS=Pongo abelii ... [more]
HSP7C_MOUSE3.404e-1933.70Heat shock cognate 71 kDa protein OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionC05802D04SK FerrChloL1 Citrus clementina cDNA clone C05802D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296750 ID=CX296750; Name=CX296750; organism=Citrus clementina; type=EST; length=582bp
GAGGCTCACTCTCCCATGAACATGAAATGTTATCTGGAGCTGCTATTTTC
AACATGAAACGCTTAATCGGCAGAGTTGACACCGATCCTGTGGTCCATGC
AAGCAAAAGCTTACCGTTTTTGGTCCAAACCGTGGACATTGGTGTTCGTC
CATTTATTGCAGCCTTAGTGAACAATGCGTGGAGATCCACCACTCCCGAA
GAAGTCCTGGCAATATTTTTGGTGGAACTAAGAGCCATGGCTGAAACTCA
GTTGAAACGCCCAATAAGAAATGTTGTTCTAACCATTCCAGTTTCATTCA
GTCGTTTCCAACTGACACGCATTGAACGAGCATGTGCTATGGCTGGCCTT
CATGTCCTCAGACTTATGCCTGAACCAACTGCTGTAGCTCTATTGTATGC
TCAGCAGCAGCAACAGAGTGTGCATGAGAATTTGGGCAGTGGAAGTGAGA
AGATTGCGGTCATTTTCAATATGGGTGCTGGGTACTGTGATGTCACTGTG
AGTGCTACAGCTGGAGGAGTTTCACAGATTAAAGCTTTATCAGGAAGTGC
TATTGGAGGAGAGGATTTACTTCAGAATATGA
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