CX296750

Overview
NameCX296750
Unique NameCX296750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length582
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4958 contig Ccv1_Contig4958:410..991. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: DNAK1_PROMM (Chaperone protein dnaK1 OS=Prochlorococcus marinus (strain MIT 9313) GN=dnaK1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.061e-12
Identity = 60/196 (30.61%), Postives = 97/196 (49.49%), Query Frame = 3
Query:    3 GSLSHEHEMLSGAAIF-NMKRLIGRVDTDPVVHASKSLPFLVQTVDIG-VRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSG-SAIGGEDLLQNM 581
            G L+    +L+    F N+KR +GR   D +  +S S+P+ V+  + G VR  ++  V    R   PEE++A  + +L   A T L  P+   V+T+P  F+  Q      A  +AG+ V R++ EPTA AL Y               + +  ++F++G G  DV++   A GV  +KA  G + +GG D  Q +
Sbjct:   51 GQLARRQLVLNPRNTFANLKRFVGR-GWDEMDDSSLSVPYTVRANEQGNVR--VSCQVTE--REYAPEELVASIIRKLVDDAATYLGEPVEAAVVTVPAYFNDAQRQATRDAGRLAGITVERILNEPTAAALAY----------GFDRSAARRVLVFDLGGGTFDVSLMRVANGVFDVKATCGDTQLGGNDFDQRI 231          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSP13_MOUSE (Heat shock 70 kDa protein 13 OS=Mus musculus GN=Hspa13 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.385e-12
Identity = 53/181 (29.28%), Postives = 92/181 (50.83%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHASKS-LPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSG-SAIGGEDLLQNM 581
            I++ KR IG++ T   + A     PF V   + G+  F  ++ +N     +PE V +  L++L+ MAE  L  P+ N V+++P  F   Q     +A  +AGL +LR++ EPTA A+ Y        +           ++ ++G G  DV++    GG+   +A+SG + +GG+D  Q +
Sbjct:   96 IYDAKRFIGKIFTPEELEAEVGRYPFKVLHRN-GMAEF--SVTSNETIIVSPEFVGSRLLLKLKEMAEEYLGMPVANAVISVPAEFDLQQRNSTIQAANLAGLKILRVINEPTAAAMAYGLHKVDVFY----------VLVIDLGGGTLDVSLLNKQGGMFLTRAMSGNNKLGGQDFNQRL 263          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSCA_THIDA (Chaperone protein hscA homolog OS=Thiobacillus denitrificans (strain ATCC 25259) GN=hscA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.385e-12
Identity = 57/182 (31.32%), Postives = 90/182 (49.45%), Query Frame = 3
Query:   45 IFNMKRLIGR--VDTDPVVHASKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSG-SAIGGEDLLQNM 581
            I ++KR +GR   D D +     SLP+        V+   AA V +      P E+ A  L  +R  AE  +   +   V+T+P  F   Q    + A  +AGL+VLRL+ EPTA A+ Y           L + SE +  ++++G G  D+++   A GV ++ A +G SA+GG+D  Q +
Sbjct:   83 IVSVKRFMGRGIADIDDIA----SLPYRFVDAPGMVQLKTAAGVKS------PVEISAEILKLMRERAEASMGGELVGAVITVPAYFDDAQRQATKDAAQLAGLNVLRLLNEPTAAAIAY----------GLDNASEGVYAVYDLGGGTFDISILRLARGVFEVLATNGDSALGGDDFDQRV 244          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSCA_SHESH (Chaperone protein hscA homolog OS=Shewanella sediminis (strain HAW-EB3) GN=hscA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.385e-12
Identity = 52/175 (29.71%), Postives = 86/175 (49.14%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHASKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSG-SAIGGED 566
            I ++KR +GR   D +    + LP+  Q  + G+  F          +  P ++ +  L  L + AE+ L   +  +V+T+P  F   Q    + A A+ G+ VLRL+ EPTA A+ Y           L SG E +  I+++G G  D+++     GV ++ A  G SA+GG+D
Sbjct:   82 IVSVKRFMGRSLAD-IQSGIQDLPYRFQASENGLPLFATEQ-----GTVNPVQISSEILKPLISRAESTLGGDLEGIVITVPAYFDDAQRQGTKDAAALLGVKVLRLLNEPTAAAIAY----------GLDSGQEGVIAIYDLGGGTFDISILRLNKGVFEVLATGGDSALGGDD 240          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSCA_SHEFN (Chaperone protein hscA homolog OS=Shewanella frigidimarina (strain NCIMB 400) GN=hscA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.385e-12
Identity = 56/175 (32.00%), Postives = 84/175 (48.00%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHASKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSG-SAIGGED 566
            I ++KR +GR  TD +      LP+ +   + G+  F   +         P +V A  L  L A AET L   +  VV+T+P  F   Q    + A  + G+ VLRL+ EPTA A+ Y           L S  E +  I+++G G  D++V     GV ++ A  G SA+GG+D
Sbjct:   82 IVSVKRFMGRSLTD-IQSGVHRLPYELHASENGLPVFTTPM-----GQVNPIQVSAEILKPLIARAETTLGGELAGVVITVPAYFDDAQRQGTKDAAELLGVKVLRLLNEPTAAAIAY----------GLDSKQEGVIAIYDLGGGTFDISVLRLNRGVFEVLATGGDSALGGDD 240          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSCA_RALEH (Chaperone protein hscA homolog OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=hscA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.385e-12
Identity = 46/131 (35.11%), Postives = 67/131 (51.15%), Query Frame = 3
Query:  192 TPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSG-SAIGGEDLLQNM 581
            +P E+ A  L  LR  AE  L   +   V+T+P  F   Q    + A  +AGL VLRL+ EPTA A+ Y           L + SE I  ++++G G  D++V     GV ++ A  G SA+GG+D  Q +
Sbjct:  124 SPVEISAEILATLRQRAEDTLGDDLVGAVITVPAYFDEAQRQATKDAARLAGLEVLRLLNEPTAAAIAY----------GLDNASEGIYAVYDLGGGTFDISVLKLTQGVFEVLATGGDSALGGDDFDQRL 244          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSCA_PSEE4 (Chaperone protein hscA homolog OS=Pseudomonas entomophila (strain L48) GN=hscA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.385e-12
Identity = 57/176 (32.39%), Postives = 87/176 (49.43%), Query Frame = 3
Query:   42 AIFNMKRLIGRVDTDPVVHASKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSG-SAIGGED 566
            +I ++KRL+GR   D V    + LP+     +  + PFI  +        +P EV A  L  LR  AE  L   +   V+T+P  F   Q    + A  +AGL+VLRL+ EPTA A+ Y           L   +E +  IF++G G  D+++     GV ++ A  G +A+GG+D
Sbjct:   81 SILSVKRLMGRGLAD-VKQLGEQLPYRFVGGESHM-PFIDTVQG----PKSPVEVSADILKVLRQRAEDTLGGELVGAVITVPAYFDDAQRQATKDAAKLAGLNVLRLLNEPTAAAVAY----------GLDQHAEGVVAIFDLGGGTFDISILRLTAGVFEVLATGGDTALGGDD 240          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSCA_HERAR (Chaperone protein hscA homolog OS=Herminiimonas arsenicoxydans GN=hscA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.385e-12
Identity = 45/126 (35.71%), Postives = 67/126 (53.17%), Query Frame = 3
Query:  192 TPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSG-SAIGGED 566
            +P EV A  L  LR  AE  L   +   V+T+P  F   Q    + A  +AGL+VLRL+ EPTA A+ Y           L +GSE +  ++++G G  DV++     GV ++ +  G SA+GG+D
Sbjct:  124 SPVEVSAEILATLRQQAEDALGDDLVGAVITVPAYFDDAQRQATKDAAKLAGLNVLRLLNEPTAAAIAY----------GLDNGSEGVFAVYDLGGGTFDVSILKLTKGVFEVLSTGGDSALGGDD 239          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSCA_BURS3 (Chaperone protein hscA homolog OS=Burkholderia sp. (strain 383) GN=hscA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.385e-12
Identity = 45/126 (35.71%), Postives = 67/126 (53.17%), Query Frame = 3
Query:  192 TPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSG-SAIGGED 566
            +P EV A  L  LR  AE  L   +   V+T+P  F   Q    + A  +AGL+VLRL+ EPTA A+ Y           L +GSE +  ++++G G  D+++     GV ++ A  G SA+GG+D
Sbjct:  124 SPVEVSAEILATLRYRAEDSLGDDLVGAVITVPAYFDEAQRQATKDAARLAGLNVLRLLNEPTAAAIAY----------GLDNGSEGLYAVYDLGGGTFDLSILKLTKGVFEVLAAGGDSALGGDD 239          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: DNAK_SALTO (Chaperone protein dnaK OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.385e-12
Identity = 46/127 (36.22%), Postives = 73/127 (57.48%), Query Frame = 3
Query:  192 TPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGS-EKIAVIFNMGAGYCDVTVSATAGGVSQIKALSG-SAIGGED 566
            TP+E+ A  L++L+  AE  L   I + V+T+P  F+  Q    + A  +AG +VLR++ EPTA AL Y           L  GS E+  ++F++G G  DV++   A GV ++K+ SG + +GG+D
Sbjct:   87 TPQEISARTLMKLKRDAEAYLGEQITDAVITVPAYFNDGQRQATKEAGEIAGFNVLRIVNEPTAAALAY----------GLDKGSKEQTVLVFDLGGGTFDVSLLELAEGVIEVKSTSGDNLLGGDD 203          
The following BLAST results are available for this feature:
BLAST of CX296750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK1_PROMM1.061e-1230.61Chaperone protein dnaK1 OS=Prochlorococcus marinus... [more]
HSP13_MOUSE1.385e-1229.28Heat shock 70 kDa protein 13 OS=Mus musculus GN=Hs... [more]
HSCA_THIDA1.385e-1231.32Chaperone protein hscA homolog OS=Thiobacillus den... [more]
HSCA_SHESH1.385e-1229.71Chaperone protein hscA homolog OS=Shewanella sedim... [more]
HSCA_SHEFN1.385e-1232.00Chaperone protein hscA homolog OS=Shewanella frigi... [more]
HSCA_RALEH1.385e-1235.11Chaperone protein hscA homolog OS=Ralstonia eutrop... [more]
HSCA_PSEE41.385e-1232.39Chaperone protein hscA homolog OS=Pseudomonas ento... [more]
HSCA_HERAR1.385e-1235.71Chaperone protein hscA homolog OS=Herminiimonas ar... [more]
HSCA_BURS31.385e-1235.71Chaperone protein hscA homolog OS=Burkholderia sp.... [more]
DNAK_SALTO1.385e-1236.22Chaperone protein dnaK OS=Salinispora tropica (str... [more]

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Properties
Property NameValue
Genbank descriptionC05802D04SK FerrChloL1 Citrus clementina cDNA clone C05802D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296750 ID=CX296750; Name=CX296750; organism=Citrus clementina; type=EST; length=582bp
GAGGCTCACTCTCCCATGAACATGAAATGTTATCTGGAGCTGCTATTTTC
AACATGAAACGCTTAATCGGCAGAGTTGACACCGATCCTGTGGTCCATGC
AAGCAAAAGCTTACCGTTTTTGGTCCAAACCGTGGACATTGGTGTTCGTC
CATTTATTGCAGCCTTAGTGAACAATGCGTGGAGATCCACCACTCCCGAA
GAAGTCCTGGCAATATTTTTGGTGGAACTAAGAGCCATGGCTGAAACTCA
GTTGAAACGCCCAATAAGAAATGTTGTTCTAACCATTCCAGTTTCATTCA
GTCGTTTCCAACTGACACGCATTGAACGAGCATGTGCTATGGCTGGCCTT
CATGTCCTCAGACTTATGCCTGAACCAACTGCTGTAGCTCTATTGTATGC
TCAGCAGCAGCAACAGAGTGTGCATGAGAATTTGGGCAGTGGAAGTGAGA
AGATTGCGGTCATTTTCAATATGGGTGCTGGGTACTGTGATGTCACTGTG
AGTGCTACAGCTGGAGGAGTTTCACAGATTAAAGCTTTATCAGGAAGTGC
TATTGGAGGAGAGGATTTACTTCAGAATATGA
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