CX296773

Overview
NameCX296773
Unique NameCX296773
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13572 contig Ccv1_Contig13572:142..867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 51/112 (45.54%), Postives = 59/112 (52.68%), Query Frame = 1 
Query:  376 RECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDP 660
            RE E+IH RWAMLG LG I  E L+  GV      W  AG     EG   YLG P      ++  IW  +V+++G IE  R         LDP   LYPGG FDPLGLA DP
Sbjct:   94 RELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDP 202
[Close]
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 48/112 (42.86%), Postives = 60/112 (53.57%), Query Frame = 1 
Query:  376 RECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDP 660
            RE E+IH RWAMLG LG +  E L+  GV      W  AG     EG   YLG P      ++  IW  +V+++G++E  R         LDP+   YPGG FDPLGLA DP
Sbjct:   95 RELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPI---YPGGAFDPLGLADDP 203
The following BLAST results are available for this feature:
BLAST of CX296773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
CB21_LEMGI8.972e-1145.54Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_GOSHI8.972e-1142.86Chlorophyll a-b binding protein 151, chloroplastic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05802F07SK FerrChloL1 Citrus clementina cDNA clone C05802F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296773 ID=CX296773; Name=CX296773; organism=Citrus clementina; type=EST; length=726bp
CATTTCTTCGGGACGAGAATTCATGGTCCTGTCGTGAAACAAAGATCGGG
AAAATTCCAAGCCAGGTTCAGCTTTCGCAAGAAAAAATCCCCACCAGCCA
AAAAGGCCAGGCCTACACGAGACTCCGACCGGCTTGTCTGGTTCCCCGGC
GCCACCCCGCCGGAATGGCTCGACGGGACAATGGTGGGTGACCGTGGGTT
CGACCCGTTGGGGCTGGGGAAGCCAACAGAGTACTTGCAGTATGATTTTG
ACTCGTTGGATCAGAACTTGGCCAAGAACGATGTCGGCGAGCTTCTCGGA
GTGATTACTGATTCCGGGGAGCTGCAGCCGACGCCGCTGCAGCCGTACAC
GGAGGTATTTGGGCTGCAGAGGTTTAGAGAATGTGAGCTGATTCATGGAA
GGTGGGCCATGTTGGGTACCCTTGGCGCCATTGCTGTTGAAGCTCTCACT
GGTGTCGCATGGCAGGATGCTGGAAAGGTGGAGCTGGTGGAGGGTTCATC
TTATCTTGGCCAACCACTTCCATTTTCATTAACAACATTGATTTGGATTG
AAGTTATTGTGATTGGGTACATAGAATATCAAAGAAATGCAGAGCTTGAT
CCAGTGAAAAGACTATACCCTGGTGGGTATTTTGATCCTCTTGGCTTGGC
CTCAGATCCTGGGAAGCTTGAAATCTTCATTGGCTGAAATCAGCACGCTC
GTCTAGCATGGTAGCATTTTTATCTT
back to top