CX296846

Overview
NameCX296846
Unique NameCX296846
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11611 contig Ccv1_Contig11611:594..1350. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296846 vs. ExPASy Swiss-Prot
Match: RSH_BRUA2 (GTP pyrophosphokinase rsh OS=Brucella abortus (strain 2308) GN=rsh PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.997e-41
Identity = 95/214 (44.39%), Postives = 139/214 (64.95%), Query Frame = 3
Query:   57 LVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDD 698
            L+ +A + A + H  QKR SG+P+  HP+EVA IL ++ LD  +IA  LLHDT+EDT   T + I++ FG  + ++VEG TK+ KL  +       S + V+A++LR++ LA++E+VRV++VKLADRLHNMRTL  M   K+  IA ET+ ++APLA  +GM  ++ ELE L+F Y N + +  V  R+A        EL E N+ L++KIE D
Sbjct:   22 LLNKAYVYAMQKHGSQKRASGDPYFSHPLEVAAILTDMHLDEATIAIALLHDTIEDTTA-TRQEIDQLFGPEIGKLVEGLTKLKKLDLV-------SKKAVQAENLRKLLLAISEDVRVLLVKLADRLHNMRTLGVMREDKRLRIAEETMDIYAPLAGRMGMQDMREELEELAFRYINPDAWRAVTDRLA--------ELLEKNRGLLQKIETD 219          
BLAST of CX296846 vs. ExPASy Swiss-Prot
Match: RSH_BRUSU (GTP pyrophosphokinase rsh OS=Brucella suis GN=rsh PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.220e-41
Identity = 95/214 (44.39%), Postives = 139/214 (64.95%), Query Frame = 3
Query:   57 LVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDD 698
            L+ +A + A + H  QKR SG+P+  HP+EVA IL ++ LD  +IA  LLHDT+EDT   T + I++ FG  + ++VEG TK+ KL  +       S + V+A++LR++ LA++E+VRV++VKLADRLHNMRTL  M   K+  IA ET+ ++APLA  +GM  ++ ELE L+F Y N + +  V  R+A        EL E N+ L++KIE D
Sbjct:   22 LLNKAYVYAMQKHGSQKRASGDPYFSHPLEVAAILTDMHLDEATIAIALLHDTIEDTTA-TRQEIDQLFGPEIGKLVEGLTKLKKLDLV-------SKKAVQAENLRKLLLAISEDVRVLLVKLADRLHNMRTLGVMCEDKRLRIAEETMDIYAPLAGRMGMQDMREELEELAFRYINPDAWRAVTDRLA--------ELLEKNRGLLQKIETD 219          
BLAST of CX296846 vs. ExPASy Swiss-Prot
Match: RSH_BRUME (GTP pyrophosphokinase rsh OS=Brucella melitensis GN=rsh PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 5.220e-41
Identity = 95/214 (44.39%), Postives = 139/214 (64.95%), Query Frame = 3
Query:   57 LVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDD 698
            L+ +A + A + H  QKR SG+P+  HP+EVA IL ++ LD  +IA  LLHDT+EDT   T + I++ FG  + ++VEG TK+ KL  +       S + V+A++LR++ LA++E+VRV++VKLADRLHNMRTL  M   K+  IA ET+ ++APLA  +GM  ++ ELE L+F Y N + +  V  R+A        EL E N+ L++KIE D
Sbjct:   22 LLNKAYVYAMQKHRSQKRASGDPYFSHPLEVAAILTDMHLDEATIAIALLHDTIEDTTA-TRQEIDQLFGPEIGKLVEGLTKLKKLDLV-------SKKAVQAENLRKLLLAISEDVRVLLVKLADRLHNMRTLGVMREDKRLRIAEETMDIYAPLAGRMGMQDMREELEELAFRYINPDAWRAVTDRLA--------ELLEKNRGLLQKIETD 219          
BLAST of CX296846 vs. ExPASy Swiss-Prot
Match: SPOT_BORBU (Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Borrelia burgdorferi GN=spoT PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.772e-40
Identity = 88/234 (37.61%), Postives = 148/234 (63.25%), Query Frame = 3
Query:   30 SYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKLK 731
            +Y    E + + +AL +A + H GQ R SGEP+IIHP+ V+  L + +LD+++  AGLLHD +EDTNV   E I +EF   +  +++G TK+  L      N+  S+++  A+ + +MF AMT ++R+II+KLAD+LHNM TLS++P ++Q  IA + L  + P+A+ LG+  +K+ LE+LSF +   +DY ++K  +++   E EK+L +    + K+++       +TV+ K
Sbjct:   30 TYKDEFERKSIFKALEIAEQLHYGQYRESGEPYIIHPIMVSLFLAKFQLDFKATIAGLLHDVLEDTNVEK-EEIVKEFDEEILSLIDGVTKIHDL-----HNKTRSIKE--ANTISKMFFAMTHDIRIIIIKLADKLHNMTTLSYLPKNRQDRIAKDCLSTYVPIAERLGISSLKTYLEDLSFKHLYPKDYKEIKNFLSETKIEREKKLYKGKLSIEKELQKSGIEAEITVRSK 255          
BLAST of CX296846 vs. ExPASy Swiss-Prot
Match: RELA_MYCLE (Probable GTP pyrophosphokinase OS=Mycobacterium leprae GN=relA PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.402e-38
Identity = 88/194 (45.36%), Postives = 122/194 (62.89%), Query Frame = 3
Query:   51 LELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSK--LGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVA 626
            L +V+RA  +A + H  Q RRSG+P+I HP+ VA IL EL +D  ++ A LLHDTVEDT   T E + EEFG  V  +V+G TK+ +  LG              + + +R+M  AM  + RV+++K+ADRLHNMRT+  +PP KQ+  A ETL+V APLA  LGM  +K ELE+LSF   + + Y ++ R VA
Sbjct:   77 LSIVQRAFEVADQRHASQLRRSGDPYITHPLAVANILAELGMDITTLVAALLHDTVEDTGY-TLEALSEEFGDEVGHLVDGVTKLDRVVLGSA-----------AEGETIRKMITAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMASVKWELEDLSFAILHPKKYEEIVRLVA 258          
BLAST of CX296846 vs. ExPASy Swiss-Prot
Match: RELA_CORGL (GTP pyrophosphokinase OS=Corynebacterium glutamicum GN=relA PE=3 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.204e-37
Identity = 83/205 (40.49%), Postives = 130/205 (63.41%), Query Frame = 3
Query:   48 ELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEE 662
            +++++ RA   A   HDG  R+SG+P+I HP+ VA I  E+ +D  ++ A LLHDTVEDT+  + + +  +FG  V R+V+G TK+ K+               +A+ +R+M +AM+++ RV+++K+ADRLHNMRT+  +PP KQ+  A +TL+V APLA  LGM  +K ELE+LSF     + Y ++ R VAD     ++ L+E
Sbjct:   51 DVQVLERAYDTAERLHDGVIRKSGDPYITHPLAVATIAAEIGMDTTTLVAALLHDTVEDTDY-SLDDLTRDFGEEVARLVDGVTKLDKVALGAA---------AEAETIRKMIVAMSQDPRVLVIKVADRLHNMRTMRFLPPEKQAKKARQTLEVIAPLAHRLGMASVKWELEDLSFAILYPKKYEEIVRLVADRAPSRDRYLKE 245          
BLAST of CX296846 vs. ExPASy Swiss-Prot
Match: RELA_MYCTU (Probable GTP pyrophosphokinase OS=Mycobacterium tuberculosis GN=relA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.053e-37
Identity = 86/195 (44.10%), Postives = 123/195 (63.08%), Query Frame = 3
Query:   48 ELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSK--LGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVA 626
            +L +++RA  +A + H  Q R+SG+P+I HP+ VA IL EL +D  ++ A LLHDTVEDT   T E + EEFG  V  +V+G TK+ +  LG              + + +R+M  AM  + RV+++K+ADRLHNMRT+  +PP KQ+  A ETL+V APLA  LGM  +K ELE+LSF   + + Y ++ R VA
Sbjct:   79 DLSILQRAYEVADQRHASQLRQSGDPYITHPLAVANILAELGMDTTTLVAALLHDTVEDTGY-TLEALTEEFGEEVGHLVDGVTKLDRVVLGSA-----------AEGETIRKMITAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMASVKWELEDLSFAILHPKKYEEIVRLVA 261          
BLAST of CX296846 vs. ExPASy Swiss-Prot
Match: RELA_MYCBO (Probable GTP pyrophosphokinase OS=Mycobacterium bovis GN=relA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.053e-37
Identity = 86/195 (44.10%), Postives = 123/195 (63.08%), Query Frame = 3
Query:   48 ELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSK--LGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVA 626
            +L +++RA  +A + H  Q R+SG+P+I HP+ VA IL EL +D  ++ A LLHDTVEDT   T E + EEFG  V  +V+G TK+ +  LG              + + +R+M  AM  + RV+++K+ADRLHNMRT+  +PP KQ+  A ETL+V APLA  LGM  +K ELE+LSF   + + Y ++ R VA
Sbjct:   79 DLSILQRAYEVADQRHASQLRQSGDPYITHPLAVANILAELGMDTTTLVAALLHDTVEDTGY-TLEALTEEFGEEVGHLVDGVTKLDRVVLGSA-----------AEGETIRKMITAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMASVKWELEDLSFAILHPKKYEEIVRLVA 261          
BLAST of CX296846 vs. ExPASy Swiss-Prot
Match: SPOT_SPICI (Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Spiroplasma citri GN=spoT PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.019e-36
Identity = 86/214 (40.19%), Postives = 133/214 (62.15%), Query Frame = 3
Query:   51 LELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHE----KELEEANKILM 680
            L+ +++A   A E H GQ R SG  +IIHP+     L +  +  +++ AGLLHD +EDT   TFE ++E FG  +  +VEG TKVS   K     EN +   +KA  LR+++L+M +++RVIIVKLADRLHN++T+ ++ P +Q  IA E+L++++ +A  LGM  +K E+E++SF   N   Y K+   +    KE E    +++EE  KIL+
Sbjct:   24 LKEIQKAYEYAEEKHHGQVRNSGARYIIHPLWTTFFLAQWRMGPKTLIAGLLHDVLEDTPA-TFEELQELFGIEIANLVEGVTKVSYFAK-----ENRT--QIKAQYLRKLYLSMAKDIRVIIVKLADRLHNLKTIGYLKPERQQIIARESLEIYSAIAHRLGMKAVKQEIEDISFKIINPVQYNKIVSLLESSNKERENTINQKIEELKKILI 229          
BLAST of CX296846 vs. ExPASy Swiss-Prot
Match: RELA_STRCO (GTP pyrophosphokinase OS=Streptomyces coelicolor GN=relA PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.471e-35
Identity = 84/207 (40.58%), Postives = 127/207 (61.35%), Query Frame = 3
Query:   36 LSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKEL 656
            +  + L  + RA  +A   H GQKR+SG+P+I HP+ V  IL EL +D  ++ AGLLHDTVEDT     E +  +FG  V  +V+G TK+ K+            +  +A+ +R+M +AM ++ RV+++KLADRLHNMRT+ ++   KQ   A ETL+++APLA  LGM  IK ELE+L+F     + Y ++ R VA+   + ++ L
Sbjct:  119 IETSTLRQIERAYQVAERWHRGQKRKSGDPYITHPLAVTTILAELGMDPATLMAGLLHDTVEDTEY-GLEDLRRDFGDVVTLLVDGVTKLDKV---------KFGEAAQAETVRKMVVAMAKDPRVLVIKLADRLHNMRTMRYLKREKQEKKARETLEIYAPLAHRLGMNTIKWELEDLAFAILYPKMYDEIVRLVAERAPKRDEYL 315          
The following BLAST results are available for this feature:
BLAST of CX296846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
RSH_BRUA23.997e-4144.39GTP pyrophosphokinase rsh OS=Brucella abortus (str... [more]
RSH_BRUSU5.220e-4144.39GTP pyrophosphokinase rsh OS=Brucella suis GN=rsh ... [more]
RSH_BRUME5.220e-4144.39GTP pyrophosphokinase rsh OS=Brucella melitensis G... [more]
SPOT_BORBU5.772e-4037.61Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohyd... [more]
RELA_MYCLE5.402e-3845.36Probable GTP pyrophosphokinase OS=Mycobacterium le... [more]
RELA_CORGL1.204e-3740.49GTP pyrophosphokinase OS=Corynebacterium glutamicu... [more]
RELA_MYCTU2.053e-3744.10Probable GTP pyrophosphokinase OS=Mycobacterium tu... [more]
RELA_MYCBO2.053e-3744.10Probable GTP pyrophosphokinase OS=Mycobacterium bo... [more]
SPOT_SPICI1.019e-3640.19Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohyd... [more]
RELA_STRCO1.471e-3540.58GTP pyrophosphokinase OS=Streptomyces coelicolor G... [more]

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Properties
Property NameValue
Genbank descriptionC05803E01SK FerrChloL1 Citrus clementina cDNA clone C05803E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296846 ID=CX296846; Name=CX296846; organism=Citrus clementina; type=EST; length=757bp
GGTTGTGGGAGGATCTTAGGCCCACCATATCATACCTTTCACCTAATGAA
TTGGAATTGGTCCGTAGAGCTCTGATGTTGGCTTTTGAGGCGCATGATGG
TCAGAAAAGACGGAGTGGAGAGCCTTTCATCATTCATCCAGTTGAAGTTG
CTCGTATTCTGGGTGAACTTGAACTGGATTGGGAATCTATTGCTGCGGGA
TTACTACATGACACAGTTGAAGATACAAATGTTGTTACTTTTGAAAGAAT
AGAGGAGGAGTTTGGAGCTACTGTACGCCGCATTGTAGAGGGAGAGACTA
AGGTATCAAAGCTGGGAAAGTTAAAGTGTAAGAATGAAAACCATTCAGTG
CAAGATGTTAAAGCTGATGACCTACGGCAAATGTTTCTAGCCATGACTGA
GGAGGTCCGTGTTATCATAGTCAAATTGGCTGATAGATTGCATAACATGC
GCACTCTTTCACACATGCCTCCACATAAGCAGTCCAGCATTGCAACGGAG
ACATTGCAGGTCTTTGCTCCCTTGGCAAAATTGTTAGGGATGTACCAAAT
TAAGTCTGAACTTGAAAATCTATCCTTTATGTACACAAATGCTGAAGATT
ATGCCAAGGTCAAAAGAAGAGTTGCAGACCTCTATAAAGAACATGAAAAA
GAACTTGAGGAGGCGAACAAAATTTTGATGAAGAAGATTGAGGATGATCA
GTTCTTGGACCTTATGACTGTCAAACTGAAATTCGCTCTGTATGTAAGGA
GCCTTAC
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