CX296846
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296846 vs. ExPASy Swiss-Prot
Match: HDDC3_XENTR (HD domain-containing protein 3 OS=Xenopus tropicalis GN=hddc3 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.605e-13 Identity = 58/147 (39.46%), Postives = 73/147 (49.66%), Query Frame = 3 Query: 45 NELELVRRALMLAFEAHDGQKRRSGE--PFIIHPVEVARILGELE--LDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPP 473 ++ L+ A A E H Q+R+ E P+I HP+ VARIL D + A LLHDTVEDTN TFE IE FG VR IVE T L K++ K QM A + +VKLAD+L+N+R L P Sbjct: 3 SDAALILEAANFAAEKHKQQRRKDPEKTPYINHPLGVARILSHEGGITDTAVLQAALLHDTVEDTNT-TFEEIELHFGQDVRNIVEEVTDDKTLPKMERKR-------------LQMEHAPHCSQKAKLVKLADKLYNLRDLKRCTP 135
BLAST of CX296846 vs. ExPASy Swiss-Prot
Match: HDDC3_MOUSE (HD domain-containing protein 3 OS=Mus musculus GN=Hddc3 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.935e-11 Identity = 52/136 (38.24%), Postives = 70/136 (51.47%), Query Frame = 3 Query: 84 FEAHDGQKRR----SGEPFIIHPVEVARILGELE--LDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPP 473 F AH +++R G P+I HP+ VARIL D + A LLHDTVEDT+ T + +E FGA VRR+VE T L KL+ K + Q+ A +VKLAD+L+N+R L+ P Sbjct: 14 FAAHKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDTDT-TLDEVELHFGAQVRRLVEEVTDDKTLPKLERKRQ-------------QVEQAPHSSPGAKLVKLADKLYNLRDLNRCTP 135
BLAST of CX296846 vs. ExPASy Swiss-Prot
Match: HDDC3_HUMAN (HD domain-containing protein 3 OS=Homo sapiens GN=HDDC3 PE=1 SV=3) HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11 Identity = 54/147 (36.73%), Postives = 72/147 (48.98%), Query Frame = 3 Query: 45 NELELVRRALMLAFEAHDGQKRRS--GEPFIIHPVEVARILGELE--LDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPP 473 +E + A A H Q+R+ G P+I HP+ VARIL D + A LLHDTVEDT+ T + +E FGA VRR+VE T L KL+ K Q+ A +VKLAD+L+N+R L+ P Sbjct: 3 SEAAQLLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDTDT-TLDEVELHFGAQVRRLVEEVTDDKTLPKLERKR-------------LQVEQAPHSSPGAKLVKLADKLYNLRDLNRCTP 135
BLAST of CX296846 vs. ExPASy Swiss-Prot
Match: YCB8_PSEDE (Uncharacterized 19.2 kDa protein in cobO 3'region OS=Pseudomonas denitrificans PE=4 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.603e-11 Identity = 49/133 (36.84%), Postives = 67/133 (50.38%), Query Frame = 3 Query: 51 LELVRRALMLAFEAHDGQKRR-SGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHN 446 ++L AL A AH QKR+ G P+I+HP+ VA I+ + E IAA LLHDTVEDT+ E I+E FG V +V T +S H + V+ + RQ + + VKLAD + N Sbjct: 11 IDLENSALQFATRAHGEQKRKYDGRPYIVHPIAVAEIVRSVPHTPEMIAAALLHDTVEDTDATLLE-IKEAFGPKVATLVAWLTDIS--------TPFHGNRQVRKELDRQHLASAPAAAKT--VKLADLIDN 132 The following BLAST results are available for this feature:
BLAST of CX296846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 44
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296846 ID=CX296846; Name=CX296846; organism=Citrus clementina; type=EST; length=757bpback to top |