CX296846

Overview
NameCX296846
Unique NameCX296846
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11611 contig Ccv1_Contig11611:594..1350. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296846 vs. ExPASy Swiss-Prot
Match: HDDC3_XENTR (HD domain-containing protein 3 OS=Xenopus tropicalis GN=hddc3 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.605e-13
Identity = 58/147 (39.46%), Postives = 73/147 (49.66%), Query Frame = 3
Query:   45 NELELVRRALMLAFEAHDGQKRRSGE--PFIIHPVEVARILGELE--LDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPP 473
            ++  L+  A   A E H  Q+R+  E  P+I HP+ VARIL       D   + A LLHDTVEDTN  TFE IE  FG  VR IVE  T    L K++ K               QM  A     +  +VKLAD+L+N+R L    P
Sbjct:    3 SDAALILEAANFAAEKHKQQRRKDPEKTPYINHPLGVARILSHEGGITDTAVLQAALLHDTVEDTNT-TFEEIELHFGQDVRNIVEEVTDDKTLPKMERKR-------------LQMEHAPHCSQKAKLVKLADKLYNLRDLKRCTP 135          
BLAST of CX296846 vs. ExPASy Swiss-Prot
Match: HDDC3_MOUSE (HD domain-containing protein 3 OS=Mus musculus GN=Hddc3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.935e-11
Identity = 52/136 (38.24%), Postives = 70/136 (51.47%), Query Frame = 3
Query:   84 FEAHDGQKRR----SGEPFIIHPVEVARILGELE--LDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPP 473
            F AH  +++R     G P+I HP+ VARIL       D   + A LLHDTVEDT+  T + +E  FGA VRR+VE  T    L KL+ K +             Q+  A        +VKLAD+L+N+R L+   P
Sbjct:   14 FAAHKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDTDT-TLDEVELHFGAQVRRLVEEVTDDKTLPKLERKRQ-------------QVEQAPHSSPGAKLVKLADKLYNLRDLNRCTP 135          
BLAST of CX296846 vs. ExPASy Swiss-Prot
Match: HDDC3_HUMAN (HD domain-containing protein 3 OS=Homo sapiens GN=HDDC3 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11
Identity = 54/147 (36.73%), Postives = 72/147 (48.98%), Query Frame = 3
Query:   45 NELELVRRALMLAFEAHDGQKRRS--GEPFIIHPVEVARILGELE--LDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPP 473
            +E   +  A   A   H  Q+R+   G P+I HP+ VARIL       D   + A LLHDTVEDT+  T + +E  FGA VRR+VE  T    L KL+ K               Q+  A        +VKLAD+L+N+R L+   P
Sbjct:    3 SEAAQLLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDTDT-TLDEVELHFGAQVRRLVEEVTDDKTLPKLERKR-------------LQVEQAPHSSPGAKLVKLADKLYNLRDLNRCTP 135          
BLAST of CX296846 vs. ExPASy Swiss-Prot
Match: YCB8_PSEDE (Uncharacterized 19.2 kDa protein in cobO 3'region OS=Pseudomonas denitrificans PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.603e-11
Identity = 49/133 (36.84%), Postives = 67/133 (50.38%), Query Frame = 3
Query:   51 LELVRRALMLAFEAHDGQKRR-SGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHN 446
            ++L   AL  A  AH  QKR+  G P+I+HP+ VA I+  +    E IAA LLHDTVEDT+    E I+E FG  V  +V   T +S           H  + V+ +  RQ   +     +   VKLAD + N
Sbjct:   11 IDLENSALQFATRAHGEQKRKYDGRPYIVHPIAVAEIVRSVPHTPEMIAAALLHDTVEDTDATLLE-IKEAFGPKVATLVAWLTDIS--------TPFHGNRQVRKELDRQHLASAPAAAKT--VKLADLIDN 132          
The following BLAST results are available for this feature:
BLAST of CX296846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
HDDC3_XENTR4.605e-1339.46HD domain-containing protein 3 OS=Xenopus tropical... [more]
HDDC3_MOUSE1.935e-1138.24HD domain-containing protein 3 OS=Mus musculus GN=... [more]
HDDC3_HUMAN5.630e-1136.73HD domain-containing protein 3 OS=Homo sapiens GN=... [more]
YCB8_PSEDE9.603e-1136.84Uncharacterized 19.2 kDa protein in cobO 3'region ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05803E01SK FerrChloL1 Citrus clementina cDNA clone C05803E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296846 ID=CX296846; Name=CX296846; organism=Citrus clementina; type=EST; length=757bp
GGTTGTGGGAGGATCTTAGGCCCACCATATCATACCTTTCACCTAATGAA
TTGGAATTGGTCCGTAGAGCTCTGATGTTGGCTTTTGAGGCGCATGATGG
TCAGAAAAGACGGAGTGGAGAGCCTTTCATCATTCATCCAGTTGAAGTTG
CTCGTATTCTGGGTGAACTTGAACTGGATTGGGAATCTATTGCTGCGGGA
TTACTACATGACACAGTTGAAGATACAAATGTTGTTACTTTTGAAAGAAT
AGAGGAGGAGTTTGGAGCTACTGTACGCCGCATTGTAGAGGGAGAGACTA
AGGTATCAAAGCTGGGAAAGTTAAAGTGTAAGAATGAAAACCATTCAGTG
CAAGATGTTAAAGCTGATGACCTACGGCAAATGTTTCTAGCCATGACTGA
GGAGGTCCGTGTTATCATAGTCAAATTGGCTGATAGATTGCATAACATGC
GCACTCTTTCACACATGCCTCCACATAAGCAGTCCAGCATTGCAACGGAG
ACATTGCAGGTCTTTGCTCCCTTGGCAAAATTGTTAGGGATGTACCAAAT
TAAGTCTGAACTTGAAAATCTATCCTTTATGTACACAAATGCTGAAGATT
ATGCCAAGGTCAAAAGAAGAGTTGCAGACCTCTATAAAGAACATGAAAAA
GAACTTGAGGAGGCGAACAAAATTTTGATGAAGAAGATTGAGGATGATCA
GTTCTTGGACCTTATGACTGTCAAACTGAAATTCGCTCTGTATGTAAGGA
GCCTTAC
back to top