CX296849

Overview
NameCX296849
Unique NameCX296849
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length303
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig588 contig Ccv1_Contig588:998..1300. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296849 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.839e-33
Identity = 67/99 (67.68%), Postives = 75/99 (75.76%), Query Frame = 3
Query:    6 LVPNSARGKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 302
            L+ +    KFYWAPTREDRIGVCKGIFR D V + DIV+LVD  PGQSIDFFGALRARVYDDEVRKW          K LVNSKE  PTF+QP+MT++K
Sbjct:  298 LIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDK 396          
BLAST of CX296849 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.402e-33
Identity = 65/99 (65.66%), Postives = 76/99 (76.77%), Query Frame = 3
Query:    6 LVPNSARGKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 302
            L+ +    KFYWAPTREDRIGVCKGIFR DNV ++ ++K+VDTFPGQSIDFFGALRARVYDDEVRKW            L+NS +  PTFEQP+MT+EK
Sbjct:  298 LIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEK 396          
BLAST of CX296849 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 1.192e-32
Identity = 67/99 (67.68%), Postives = 73/99 (73.74%), Query Frame = 3
Query:    6 LVPNSARGKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 302
            L+ +    KFYWAPTREDRIGVCKGIFR D + D+DIV LVD FPGQSIDFFGALRARVYDDEVRK+          K LVNS+E  P FEQP MT EK
Sbjct:  294 LIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEK 392          
BLAST of CX296849 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.192e-32
Identity = 65/99 (65.66%), Postives = 74/99 (74.75%), Query Frame = 3
Query:    6 LVPNSARGKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 302
            L+ +    KFYWAPTREDRIGVC GIFR DNV  +D+VK+VD FPGQSIDFFGALRARVYDDEVRKW            L+NS +  PTFEQP+MT+EK
Sbjct:  298 LIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEK 396          
BLAST of CX296849 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 3.834e-31
Identity = 63/99 (63.64%), Postives = 71/99 (71.72%), Query Frame = 3
Query:    6 LVPNSARGKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 302
            L+ +    KFYWAPTREDRIGVC GIF+ D V  + +VKLVD FPGQSIDFFGALRARVY DEVRKW          K LVNSK+  P FEQP MT++K
Sbjct:  292 LIRDGRMEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQK 390          
BLAST of CX296849 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.555e-23
Identity = 51/98 (52.04%), Postives = 66/98 (67.35%), Query Frame = 3
Query:    6 LVPNSARGKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTME 299
            L+ +    K+YW PTREDRIGVC GIF+ DNV   ++  LVDTFPGQSIDFFGALRARVYDD VR+W          + LVN+++       P+++M+
Sbjct:  267 LIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQKV---AMPKVSMD 361          
BLAST of CX296849 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.671e-18
Identity = 40/97 (41.24%), Postives = 61/97 (62.89%), Query Frame = 3
Query:    6 LVPNSARGKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTM 296
            L+ +    KFYW P R++++G+  GIF  D ++  D+ KLVD+FP QSIDFF ALR+R+YD+++R +            +VNS E  P F++P  T+
Sbjct:  167 LIRDGRMEKFYWEPHRDEKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTL 263          
BLAST of CX296849 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.349e-18
Identity = 41/97 (42.27%), Postives = 61/97 (62.89%), Query Frame = 3
Query:    6 LVPNSARGKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTM 296
            L+ +    KFYW P R+D++G+  GIF  D ++  +I +LVDTFP QSIDFF ALR+R+YD ++R +            +VNS EA P F++P  ++
Sbjct:  167 LIRDGRMEKFYWEPNRDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERISLRVVNSLEAPPEFKKPDFSL 263          
The following BLAST results are available for this feature:
BLAST of CX296849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RCA_PHAVU1.839e-3367.68Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC2.402e-3365.66Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH1.192e-3267.68Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC1.192e-3265.66Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL3.834e-3163.64Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE6.555e-2352.04Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC1.671e-1841.24Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP6.349e-1842.27Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionC05803E04SK FerrChloL1 Citrus clementina cDNA clone C05803E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296849 ID=CX296849; Name=CX296849; organism=Citrus clementina; type=EST; length=303bp
GAGGCCTCGTGCCGAATTCGGCACGAGGGAAATTCTACTGGGCACCTACA
AGGGAGGACCGTATTGGTGTGTGCAAGGGTATCTTCAGGAATGACAATGT
GGCTGATGACGACATTGTCAAGCTTGTCGACACCTTCCCCGGCCAATCCA
TTGATTTCTTTGGAGCCCTGAGGGCCAGAGTCTATGATGATGAGGTGAGG
AAGTGGATCTCTGGTGTTGGTGTTGGAAGCATTGGCAAGAGCCTTGTGAA
CTCAAAGGAAGCAGCCCCAACATTCGAGCAACCAAGGATGACAATGGAGA
AGC
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