CX296850

Overview
NameCX296850
Unique NameCX296850
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length208
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9336 contig Ccv1_Contig9336:235..442. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296850 vs. ExPASy Swiss-Prot
Match: UBIQ_BOVIN (Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.719e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 3 
Query:   63 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 206
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296850 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.719e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 3 
Query:   63 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 206
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296850 vs. ExPASy Swiss-Prot
Match: UBIQ_TETPY (Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.469e-19
Identity = 45/48 (93.75%), Postives = 48/48 (100.00%), Query Frame = 3 
Query:   63 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 206
            MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296850 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.755e-19
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 3 
Query:   63 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 206
            MQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296850 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.274e-18
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 3 
Query:   63 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 206
            MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296850 vs. ExPASy Swiss-Prot
Match: UBIQ_EIMBO (Ubiquitin OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.274e-18
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 3 
Query:   63 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 206
            MQIFVKTLTGKTITL+VE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296850 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.664e-18
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 3 
Query:   63 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 206
            MQIFVKTLTGKTITLEVE SD+I+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296850 vs. ExPASy Swiss-Prot
Match: UBIQ_ENCCU (Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_0740i PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.664e-18
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 3 
Query:   63 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 206
            MQIFVKTLTGKTITLEVE SD+I+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296850 vs. ExPASy Swiss-Prot
Match: UBIQ_DICDI (Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.664e-18
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 3 
Query:   63 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 206
            MQIFVKTLTGKTITLEVE SD I+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296850 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.173e-18
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 3 
Query:   63 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 206
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
The following BLAST results are available for this feature:
BLAST of CX296850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
UBIQ_BOVIN5.719e-1995.83Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1[more]
UBIQ_ACACA5.719e-1995.83Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1[more]
UBIQ_TETPY7.469e-1993.75Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 ... [more]
UBIQ_EUPEU9.755e-1993.75Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]
UBIQ_TRYBB1.274e-1893.75Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1[more]
UBIQ_EIMBO1.274e-1893.75Ubiquitin OS=Eimeria bovis PE=2 SV=1[more]
UBIQ_STRPU1.664e-1893.75Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV... [more]
UBIQ_ENCCU1.664e-1893.75Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_074... [more]
UBIQ_DICDI1.664e-1893.75Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1... [more]
UBIQ_LEIMA2.173e-1893.75Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05803E05SK FerrChloL1 Citrus clementina cDNA clone C05803E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296850 ID=CX296850; Name=CX296850; organism=Citrus clementina; type=EST; length=208bp
TGGCCGATTACAATATCCAAAAGGAATCCACGCTTCATCTGGTGCTTCGT
CTCCGTGGAGGCATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCAT
TACTCTCGAAGTTGAGAGCTCCGACACGATCGACAACGTCAAGGCCAAGA
TCCAGGACAAGGAAGGGATTCCGCCGGACCAGCAGAGGCTGATCTTCGCC
GGAAAGCA
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