CX296850

Overview
NameCX296850
Unique NameCX296850
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length208
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9336 contig Ccv1_Contig9336:235..442. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296850 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.777e-11
Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = 3 
Query:   69 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 206
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGK
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGK 48
The following BLAST results are available for this feature:
BLAST of CX296850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
RUB1_ARATH9.777e-1163.04NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05803E05SK FerrChloL1 Citrus clementina cDNA clone C05803E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296850 ID=CX296850; Name=CX296850; organism=Citrus clementina; type=EST; length=208bp
TGGCCGATTACAATATCCAAAAGGAATCCACGCTTCATCTGGTGCTTCGT
CTCCGTGGAGGCATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCAT
TACTCTCGAAGTTGAGAGCTCCGACACGATCGACAACGTCAAGGCCAAGA
TCCAGGACAAGGAAGGGATTCCGCCGGACCAGCAGAGGCTGATCTTCGCC
GGAAAGCA
back to top