CX296853

Overview
NameCX296853
Unique NameCX296853
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1060 contig Ccv1_Contig1060:85..779. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296853 vs. ExPASy Swiss-Prot
Match: L18A_LUPLU (Protein LlR18A OS=Lupinus luteus GN=LLR18A PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.444e-25
Identity = 60/160 (37.50%), Postives = 99/160 (61.88%), Query Frame = 3
Query:   60 MGVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLE-KEKGIFKALEAYALANPN 536
            MG+     E +ST+ P KL+K      D ++PKV+ + +++VE++ G+GGPG+IKK   +      +  H++DA+D+ N  YNY+ I GEG     +++ +SYESK++  PDGGS   + +KF+ K   ++  E V+   + K  G+FKA+E Y LA+P+
Sbjct:    1 MGIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVI-EPIQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAIDEANLTYNYSIIGGEGLDE--SLEKISYESKILPGPDGGSIGKINVKFHTK--GDVLSETVRDQAKFKGLGLFKAIEGYVLAHPD 155          
BLAST of CX296853 vs. ExPASy Swiss-Prot
Match: RNS1_PANGI (Ribonuclease 1 OS=Panax ginseng PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.495e-24
Identity = 65/158 (41.14%), Postives = 90/158 (56.96%), Query Frame = 3
Query:   63 GVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGS--KSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALAN 530
            GV    VE TST+P +KL+   +L  D +LPK  PQ +K+ E+I GDGG G++K     E + +   K R+DA+DK+   Y Y+ I   GD  +  I+ +     +V TPDGGS  K+T +  +     A I EE +K   EK   IFKA+EAY LAN
Sbjct:    1 GVQKTEVEATSTVPAQKLYAGLLLDIDDILPKAFPQAIKSSEIIEGDGGVGTVKLVTLGEASQFNTMKQRIDAIDKDALTYTYSII--GGDILLDIIESIVNHFTIVPTPDGGSIVKNTTI--YNTIGDAVIPEENIKDATEKAGLIFKAVEAYLLAN 154          
BLAST of CX296853 vs. ExPASy Swiss-Prot
Match: L18B_LUPLU (Protein LlR18B OS=Lupinus luteus GN=LLR18B PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.483e-24
Identity = 57/159 (35.85%), Postives = 93/159 (58.49%), Query Frame = 3
Query:   60 MGVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPN 536
            MGV     E  S +   KLFK      D ++PKV+ Q+ ++VE++ G+GGPG++KK     G    Y  H++DA+D+ +  YNY+ + G G     +++ +++ESK++  PDGGS   + +KF+ K G  + +   +    +  G+FKA+E Y LANPN
Sbjct:    1 MGVFAFEDEHPSAVAQAKLFKALTKDSDDIIPKVIEQI-QSVEIVEGNGGPGTVKKITASHGGHTSYVLHKIDAIDEASFEYNYSIVGGTGLDE--SLEKITFESKLLSGPDGGSIGKIKVKFHTK-GDVLSDAVREEAKARGTGLFKAVEGYVLANPN 155          
BLAST of CX296853 vs. ExPASy Swiss-Prot
Match: PR13_PETCR (Pathogenesis-related protein B OS=Petroselinum crispum GN=PCPR1-3 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.210e-23
Identity = 62/157 (39.49%), Postives = 89/157 (56.69%), Query Frame = 3
Query:   60 MGVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALAN 530
            MGV    VE TS++  EKLFK   L  DTLLP+VLP  +K+ E + GDGG G++K  +  + + +K  K +VDA+DK    Y+Y+ I  +GD  +  I+ ++     V   DGG      I F  K  A + EE +K   ++   IFKA+EAY +AN
Sbjct:    1 MGVQKSEVEATSSVSAEKLFKGLCLDIDTLLPRVLPGAIKSSETLEGDGGVGTVKLVHLGDASPFKTMKQKVDAIDKATFTYSYSII--DGDILLGFIESINNHFTAVPNADGGCTVKSTIIFNTKGDAVVPEENIKFANDQNLTIFKAVEAYLIAN 155          
BLAST of CX296853 vs. ExPASy Swiss-Prot
Match: PR11_PETCR (Pathogenesis-related protein A OS=Petroselinum crispum GN=PCPR1-1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.210e-23
Identity = 62/157 (39.49%), Postives = 89/157 (56.69%), Query Frame = 3
Query:   60 MGVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALAN 530
            MGV    VE TS++  EKLFK   L  DTLLP+VLP  +K+ E + GDGG G++K  +  + + +K  K +VDA+DK    Y+Y+ I  +GD  +  I+ ++     V   DGG      I F  K  A + EE +K   ++   IFKA+EAY +AN
Sbjct:    1 MGVQKSEVETTSSVSAEKLFKGLCLDIDTLLPQVLPGAIKSSETLEGDGGVGTVKLVHLGDASPFKTMKQKVDAIDKATFTYSYSII--DGDILLGFIESINNHFTAVPNADGGCTVKSTIIFNTKGDAVVPEENIKFANDQNLTIFKAVEAYLIAN 155          
BLAST of CX296853 vs. ExPASy Swiss-Prot
Match: ALL2_APIGR (Major allergen Api g 2 OS=Apium graveolens PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.210e-23
Identity = 65/159 (40.88%), Postives = 94/159 (59.12%), Query Frame = 3
Query:   60 MGVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGS--KSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALAN 530
            MGV    VE  ST+  EK+++ F+L  DT+ PKVLPQ++K+VE++ GDGG G++K  +  E  ++   K +VD +DK    Y YT I   GD  +  ++ V  E  VV T DGG   K+T +  +  K  A + E+++K   EK    FKA+EAY LAN
Sbjct:    1 MGVQKTVVEAPSTVSAEKMYQGFLLDMDTVFPKVLPQLIKSVEILEGDGGVGTVKLVHLGEATEYTTMKQKVDVIDKAGLAYTYTTI--GGDILVDVLESVVNEFVVVPT-DGGCIVKNTTI--YNTKGDAVLPEDKIKEATEKSALAFKAVEAYLLAN 154          
BLAST of CX296853 vs. ExPASy Swiss-Prot
Match: PRS2_SOLTU (Pathogenesis-related protein STH-2 OS=Solanum tuberosum GN=STH-2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.181e-23
Identity = 61/161 (37.89%), Postives = 95/161 (59.01%), Query Frame = 3
Query:   60 MGVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGE--GDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPN 536
            MGV +   E T+ + P +LFK  V+  D L+PK++PQV KN+E      G GSIKK NFVEG+  KY KH++  +D +N +  Y+ IEG+  GD     ++ +SY+ K     +GG     + +++ K    +K+E+   G ++   +FK +EAY LANP+
Sbjct:    1 MGVTSYTHETTTPIAPTRLFKALVVDSDNLIPKLMPQV-KNIEA----EGDGSIKKMNFVEGSPIKYLKHKIHVVDDKNLVTKYSMIEGDVLGD----KLESISYDLKFEAHGNGGCVCKSITEYHTKGDYVLKDEEHNEGQKQGMELFKIVEAYLLANPS 152          
BLAST of CX296853 vs. ExPASy Swiss-Prot
Match: PRS1_SOLTU (Pathogenesis-related protein STH-21 OS=Solanum tuberosum GN=STH-21 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.729e-22
Identity = 60/161 (37.27%), Postives = 94/161 (58.39%), Query Frame = 3
Query:   60 MGVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGE--GDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPN 536
            MGV +  +E T+ + P +LFK  V+  D L+PK++PQV KN+E      G GSIKK  FVEG+  KY KH++  +D +N +  Y+ IEG+  GD     ++ +SY+ K     +GG     + +++ K    +K+E    G ++   +FK +EAY LANP+
Sbjct:    1 MGVTSYTLETTTPVAPTRLFKALVVDSDNLIPKLMPQV-KNIEA----EGDGSIKKMTFVEGSPIKYLKHKIHVVDDKNLVTKYSMIEGDVLGD----KLESISYDLKFEAHGNGGCVCKSIAEYHTKGDYVLKDEDHNEGKKQGMELFKIVEAYLLANPS 152          
BLAST of CX296853 vs. ExPASy Swiss-Prot
Match: ABR17_PEA (ABA-responsive protein ABR17 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.564e-22
Identity = 56/158 (35.44%), Postives = 91/158 (57.59%), Query Frame = 3
Query:   60 MGVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANP 533
            MGV   + E  ST+ P KL+K      D ++PKV+ +  + VE+I G+GGPG+IKK + +E     Y  H++DA+D+ N  YNY+ + G G     +++ V++E+ ++   DGGS   + +K++ K  A + +        K  G+ KA+E Y LANP
Sbjct:    1 MGVFVFDDEYVSTVAPPKLYKALAKDADEIVPKVIKEA-QGVEIIEGNGGPGTIKKLSILEDGKTNYVLHKLDAVDEANFGYNYSLVGGPGLHE--SLEKVAFETIILAGSDGGSIVKISVKYHTKGDAALSDAVRDETKAKGTGLIKAIEGYVLANP 155          
BLAST of CX296853 vs. ExPASy Swiss-Prot
Match: RAP_TAROF (Root allergen protein OS=Taraxacum officinale PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.940e-22
Identity = 57/152 (37.50%), Postives = 86/152 (56.58%), Query Frame = 3
Query:   84 EDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPNA 539
            E TS+L P  +FK FV+ FDT+ PK  P+  K+++ I GDGG G+IK   + +G  +   KH+VDA+D  N   +YT    EGD  +  I+  ++  K + + DGGS     + F  K  A++ +E V    E  K  FKA+E Y +++P A
Sbjct:    7 EITSSLSPSNIFKAFVIDFDTIAPKAEPETYKSIKTIEGDGGVGTIKSITYSDGVPFTSSKHKVDAIDSNNFSISYTIF--EGDVLMGIIESGTHHLKFLPSADGGSVYKHSMVFKCKGDAKLTDENVSLMKEGLKKTFKAIETYVISHPEA 156          
The following BLAST results are available for this feature:
BLAST of CX296853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
L18A_LUPLU3.444e-2537.50Protein LlR18A OS=Lupinus luteus GN=LLR18A PE=1 SV... [more]
RNS1_PANGI6.495e-2441.14Ribonuclease 1 OS=Panax ginseng PE=1 SV=1[more]
L18B_LUPLU8.483e-2435.85Protein LlR18B OS=Lupinus luteus GN=LLR18B PE=1 SV... [more]
PR13_PETCR4.210e-2339.49Pathogenesis-related protein B OS=Petroselinum cri... [more]
PR11_PETCR4.210e-2339.49Pathogenesis-related protein A OS=Petroselinum cri... [more]
ALL2_APIGR4.210e-2340.88Major allergen Api g 2 OS=Apium graveolens PE=1 SV... [more]
PRS2_SOLTU7.181e-2337.89Pathogenesis-related protein STH-2 OS=Solanum tube... [more]
PRS1_SOLTU2.729e-2237.27Pathogenesis-related protein STH-21 OS=Solanum tub... [more]
ABR17_PEA3.564e-2235.44ABA-responsive protein ABR17 OS=Pisum sativum PE=2... [more]
RAP_TAROF7.940e-2237.50Root allergen protein OS=Taraxacum officinale PE=1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05803E08SK FerrChloL1 Citrus clementina cDNA clone C05803E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296853 ID=CX296853; Name=CX296853; organism=Citrus clementina; type=EST; length=694bp
GCCGAATTCGGCACGAGGGTAGTTTTCATCTTCTTTCTTTGTTTAACTCT
TAGACAATCATGGGTGTTCTCACGTTGAATGTAGAGGATACAAGCACTCT
CCCCCCTGAAAAGTTGTTCAAACTTTTTGTCCTTCAGTTCGACACCCTTC
TGCCCAAAGTCCTGCCTCAGGTTGTAAAGAACGTTGAATTGATTTCAGGG
GATGGAGGCCCTGGAAGCATCAAGAAGTTTAACTTTGTTGAAGGTGCTGA
TTGGAAGTACTTTAAGCATAGGGTTGATGCATTGGACAAAGAGAACAAGA
TATACAATTACACGGCAATTGAAGGTGAGGGTGATGCTAACATCCCTACT
ATTGATCATGTTTCTTATGAGAGTAAGGTTGTGGGCACCCCTGACGGAGG
AAGCAAGAGCACCGTTGTTATCAAGTTCTATCCCAAACCAGGTGCCGAGA
TTAAGGAAGAGCAGGTTAAGGGAGGCTTGGAAAAGGAGAAGGGAATTTTT
AAGGCTCTGGAAGCCTATGCCTTGGCAAACCCCAATGCCGTATAAGCTCT
TACGTCAACACTTCACCGCACTTGCGTCGCCTTTGTTGCAACATTATGAA
TAATCATGTTTATGGCTTCCGTATGTCGTGTCTCTTTGTTTTCAATATGC
CAATTTATATAATTGGCTTTTGGCTAAATAAAAAAAAAAAAAAA
back to top