CX299917

Overview
NameCX299917
Unique NameCX299917
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADH1_ANAPL (Alcohol dehydrogenase 1 (Fragment) OS=Anas platyrhynchos GN=ADH1 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.369e-32
Identity = 71/183 (38.80%), Postives = 107/183 (58.47%), Query Frame = 1
Query:   64 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            GST  +FGLG +GL+V  G +  GA+RII VD+ S+KF   K  G T+ +N K+   + + +++I MT  G DY FE +G    +  A A C   +G ++++GV      ++     +L SG+   GS+FGG K+K  +P L+  YM K+  LD  +TH + F +IN  FDLL  GK +R V+
Sbjct:    3 GSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINSDKFAKAKELGATDCINPKD-HKEPIHKVLIGMTGYGVDYSFEVIGRIETMVAALASCHYNYGVSVIVGVPPAAQNITFDPM-LLFSGRTWKGSVFGGWKSKDSVPKLVADYMKKKFVLDPLITHTLPFSKINEGFDLLRAGKSIRSVL 183          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: FADH_AMYME (NAD/mycothiol-dependent formaldehyde dehydrogenase OS=Amycolatopsis methanolica PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.392e-24
Identity = 69/205 (33.66%), Postives = 105/205 (51.22%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            LL CGV  G+GAA  T  V  G +V + G G++G AV  GARL GA +II VD  ++K E     G T  VN+    +  V + +  +T G GAD   + VG     ++A+   R   G  +++GV  P  +L +   +    G  L  S +G    + D P+L+  ++   L LDKFVT  +  +++  AF  +  G+ LR V+
Sbjct:  158 LLGCGVMAGLGAAVNTGAVSRGDSVAVIGCGAVGDAVIAGARLAGANKIIAVDRDAKKLEWATELGATHTVNAT---ETDVVEAVQALTGGFGADVVIDAVGRPETWKQAF-YARDLAGTVVLVGVPTPDMRLEMPLLDFFSRGGALKSSWYGDCLPERDFPVLIDLHLQGRLPLDKFVTERISLDDVEKAFHTMHAGEVLRSVV 358          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADHB_MYCTU (Alcohol dehydrogenase B OS=Mycobacterium tuberculosis GN=adhB PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18
Identity = 63/206 (30.58%), Postives = 99/206 (48.06%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG-LASLVQEAYACCRKGWGKTIVLGVDQ-PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            L+ CGV+TG G+A RTA+V  G  V I GLG +G+A  +GA   GA  +  V+ +  K +   +FG T      N     ++++   +    A      VG L     ++Y       G  ++  +     +Q++L+   +    K + G++FGG     DIP LL  Y   +L LD  VT   K E+IN  +  ++ GK +R VI
Sbjct:  166 LVGCGVTTGYGSAVRTADVRPGDDVAIVGLGGVGMAALQGAVSAGARYVFAVEPVEWKRDQALKFGATHVYPDINAALMGIAEVTYGLM---AQKVIITVGKLDGADVDSYLTITAKGGTCVLTAIGSLVDTQVTLNLAMLTLLQKNIQGTIFGGGNPHYDIPKLLSMYKAGKLNLDDMVTTAYKLEQINDGYQDMLNGKNIRGVI 368          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADHB_MYCBO (Alcohol dehydrogenase B OS=Mycobacterium bovis GN=adhB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18
Identity = 63/206 (30.58%), Postives = 99/206 (48.06%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG-LASLVQEAYACCRKGWGKTIVLGVDQ-PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            L+ CGV+TG G+A RTA+V  G  V I GLG +G+A  +GA   GA  +  V+ +  K +   +FG T      N     ++++   +    A      VG L     ++Y       G  ++  +     +Q++L+   +    K + G++FGG     DIP LL  Y   +L LD  VT   K E+IN  +  ++ GK +R VI
Sbjct:  166 LVGCGVTTGYGSAVRTADVRPGDDVAIVGLGGVGMAALQGAVSAGARYVFAVEPVEWKRDQALKFGATHVYPDINAALMGIAEVTYGLM---AQKVIITVGKLDGADVDSYLTITAKGGTCVLTAIGSLVDTQVTLNLAMLTLLQKNIQGTIFGGGNPHYDIPKLLSMYKAGKLNLDDMVTTAYKLEQINDGYQDMLNGKNIRGVI 368          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: XYLB_PSEPU (Aryl-alcohol dehydrogenase OS=Pseudomonas putida GN=xylB PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.543e-15
Identity = 61/207 (29.47%), Postives = 99/207 (47.83%), Query Frame = 1
Query:    4 LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN-SKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMG 621
            L CG+ TG G+     N   GS + IFG G++GL+    A + G T II VDV   + E+    G T  +N + N   +++ +I  D    G  Y  E  GL +++ +A      G G+  ++G    G+ + +    +L + K L G + G   +   IP L++ Y   +   DK +     F+EIN A +   KG  L+ V+ +G
Sbjct:  167 LGCGIQTGAGSVLNALNPPAGSAIAIFGAGAVGLSAVMAAVVAGCTTIIAVDVKENRLELASELGATHIINPAANDPIEAIKEIFAD----GVPYVLETSGLPAVLTQAILSSAIG-GEIGIVGAPPMGATVPVDINFLLFNRK-LRGIVEGQSISDIFIPRLVELYRQGKFPFDKLIKF-YPFDEINRAAEDSEKGVTLKPVLRIG 366          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADH_RALEU (Alcohol dehydrogenase OS=Ralstonia eutropha GN=adh PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.543e-15
Identity = 61/190 (32.11%), Postives = 92/190 (48.42%), Query Frame = 1
Query:   16 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEV-LHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL 579
            +STG   A   AN+ +G TV +F  G IGL    GARLCGAT II +D    + EI ++ G    +N +NC    V   ++ +T G G D   E +G  +  +++    + G G    LGV      + LS+F   L   KI      GG   K  +  L+       ++L   VTH+ + ++I +A+DL
Sbjct:  169 MSTGFKGA-ENANIRIGHTVAVFAQGPIGLCATAGARLCGATTIIAIDGNDHRLEIARKMGADVVLNFRNC---DVVDEVMKLTGGRGVDASIEALGTQATFEQSLRVLKPG-GTLSSLGVYSSDLTIPLSAFAAGLGDHKINTALCPGG---KERMRRLINVIESGRVDLGALVTHQYRLDDIVAAYDL 350          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: YPHC_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein yphC OS=Escherichia coli (strain K12) GN=yphC PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.964e-14
Identity = 62/210 (29.52%), Postives = 100/210 (47.62%), Query Frame = 1
Query:    4 LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLAS---LVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMG----SLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            +SCGV T      R   V     V++ GLG +G+     A+  GA RIIGVD++ E+  + K+ GV +  +      + + QII ++T GGAD   +C G A+   L  ++ A     WG+ + +G  + G      S +++H  + ++G    SLF   K   D+        D +L     +TH    E+   A+ L+  GKC + VI
Sbjct:  156 ISCGVGTAYEGILR-GEVSGSDNVLVVGLGPVGMMAMMLAKGRGAKRIIGVDMLPERLAMAKQLGVMD--HGYLATTEGLPQIIAELTHGGADVALDCSGNAAGRLLALQSTA----DWGRVVYIG--ETGKVEFEVSADLMHHQRRIIGSWVTSLFHMEKCAHDL-------TDWKLWPRNAITHRFSLEQAGDAYALMASGKCGKVVI 349          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: XYL2_YEAST (D-xylulose reductase OS=Saccharomyces cerevisiae GN=XYL2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.167e-13
Identity = 49/180 (27.22%), Postives = 84/180 (46.67%), Query Frame = 1
Query:   43 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG--GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 576
            + A ++ G+  V+FG G IGL   + A + GA  ++ VD++  K E  ++FG T  VNS +         +I    G  GAD  FEC G    V+     C+ G G  + +G+ Q   Q  +S   ++ + ++     F     + D    ++    ++L L  F+TH   F++   AF+
Sbjct:  165 KLAKIKFGARCVVFGAGPIGLLAGKVASVFGAADVVFVDLLENKLETARQFGATHIVNSGDLPHGVTVDSVIKKAIGKKGADVVFECSGAEPCVRAGIEVCKAG-GTIVQVGMGQEEIQFPIS---IIPTKELTFQGCF--RYCQGDYSDSIELVSSRKLSLKPFITHRYSFKDAVEAFE 338          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: TERPD_PSESP (Probable alcohol dehydrogenase OS=Pseudomonas sp. GN=terPD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.035e-11
Identity = 47/153 (30.72%), Postives = 81/153 (52.94%), Query Frame = 1
Query:    4 LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV-DQPGSQLSLSSFEVLHSGKILMGSLFG 456
            L CGV TG GA   + +V  G + ++ G G++GL+    A+L G +RII  +  + K E     G TE ++  N   +++ + +  +T+G G DY  EC GL S++++A        G+  V+GV  +  +  ++S   ++  G  LMG + G
Sbjct:  147 LGCGVQTGAGAVMISLDVRAGRSFLVLGGGAVGLSAVMAAKLRGCSRIIVSEPSAAKREQALALGATEVIDPLN---ENLVERVQQITEGQGCDYALECTGLVSVMEQAIDSMAMR-GQLAVVGVPPKLDATAAVSPLALIQKGLKLMGVIEG 295          
The following BLAST results are available for this feature:
BLAST of CX299917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
ADH1_ANAPL2.369e-3238.80Alcohol dehydrogenase 1 (Fragment) OS=Anas platyrh... [more]
FADH_AMYME1.392e-2433.66NAD/mycothiol-dependent formaldehyde dehydrogenase... [more]
ADHB_MYCTU7.400e-1830.58Alcohol dehydrogenase B OS=Mycobacterium tuberculo... [more]
ADHB_MYCBO7.400e-1830.58Alcohol dehydrogenase B OS=Mycobacterium bovis GN=... [more]
XYLB_PSEPU1.543e-1529.47Aryl-alcohol dehydrogenase OS=Pseudomonas putida G... [more]
ADH_RALEU1.543e-1532.11Alcohol dehydrogenase OS=Ralstonia eutropha GN=adh... [more]
YPHC_ECOLI4.964e-1429.52Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
XYL2_YEAST7.167e-1327.22D-xylulose reductase OS=Saccharomyces cerevisiae G... [more]
TERPD_PSESP1.035e-1130.72Probable alcohol dehydrogenase OS=Pseudomonas sp. ... [more]

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Properties
Property NameValue
Genbank descriptionC07004A03SK SaltLeaf1 Citrus clementina cDNA clone C07004A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299917 ID=CX299917; Name=CX299917; organism=Citrus clementina; type=EST; length=719bp
CTTCTAAGCTGTGGAGTATCAACAGGCGTGGGAGCTGCTTGGAGAACAGC
AAATGTAGAGGTTGGATCAACTGTTGTTATATTTGGGCTTGGTTCAATTG
GATTAGCGGTTGCAGAGGGAGCGAGATTATGTGGTGCTACAAGGATTATA
GGCGTGGATGTGATCTCGGAAAAATTTGAAATTGGAAAAAGGTTTGGAGT
TACAGAGTTTGTGAATTCTAAAAACTGTGGGGATAAATCTGTAAGCCAGA
TAATCATTGACATGACTGATGGGGGTGCTGATTACTGCTTTGAATGTGTT
GGTTTGGCATCCTTGGTGCAAGAAGCATATGCTTGTTGCCGAAAGGGTTG
GGGGAAAACAATTGTGTTGGGAGTGGACCAGCCGGGGTCACAGTTGAGCC
TGAGCTCTTTTGAGGTCCTTCACAGTGGAAAAATTCTGATGGGATCATTG
TTTGGAGGTCTCAAAGCTAAATCTGATATTCCTATTCTTTTGAAACGTTA
CATGGATAAGGAACTAGAGCTGGATAAGTTTGTCACTCATGAGATGAAGT
TTGAAGAAATCAATAGCGCGTTTGATTTACTTATAAAAGGAAAGTGTCTC
CGTTGTGTGATATGGATGGGCGAATAAGATTTCTTGCATTATTTTCTTGT
ATGTACTTTCTCCAATATTACCTCTCATATCTAAGCAATTGACCACCATT
TGTGATGGACATGTGTATA
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