CX299917

Overview
NameCX299917
Unique NameCX299917
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADH1_PENAM (Alcohol dehydrogenase 1 OS=Pennisetum americanum GN=ADH1 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.332e-50
Identity = 96/206 (46.60%), Postives = 139/206 (67.48%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM 618
            +LSCG+STG+GA+   A    GSTV IFGLG++GLA AEGAR+ GA+RIIGVD+   +FE  K+FG TEFVN K+  +K V +++ DMT+GG D   EC G  + + +A+ C   GWG  +++GV    ++        L+  + L G+ FG  K ++D+P +++ YM KELE++KF+TH + F EIN AFDL+ KG+ +RC+I M
Sbjct:  174 VLSCGISTGLGASINVAKPPKGSTVAIFGLGAVGLAAAEGARIAGASRIIGVDLNPSRFEEAKKFGCTEFVNPKD-HNKPVQEVLADMTNGGVDRSVECTGNINAMIQAFECVHDGWGVAVLVGVPHKDAEFKTHPMNFLNE-RTLKGTFFGNFKPRTDLPNVVELYMKKELEVEKFITHSVPFSEINKAFDLMAKGEGIRCIIRM 377          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADHX_HUMAN (Alcohol dehydrogenase class-3 OS=Homo sapiens GN=ADH5 PE=1 SV=4)

HSP 1 Score: 196.823 bits (499), Expect = 9.575e-50
Identity = 91/204 (44.61%), Postives = 138/204 (67.65%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            LL CG+STG GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+  +KF   K FG TE +N ++   K + +++I+MTDGG DY FEC+G   +++ A   C KGWG ++V+GV   G +++   F+++ +G+   G+ FGG K+   +P L+  YM K++++D+FVTH + F+EIN AF+L+  GK +R V+
Sbjct:  171 LLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDF-SKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLV-TGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVV 372          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADH1_ORYSJ (Alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=ADH1 PE=2 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 9.575e-50
Identity = 95/206 (46.12%), Postives = 140/206 (67.96%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM 618
            +LSCG+STG+GA    A    GSTV IFGLG++GLA AEGAR+ GA+RIIG+D+ + +FE  ++FG TEFVN K+  DK V Q++ +MT+GG D   EC G  + + +A+ C   GWG  +++GV    ++        L+  + L G+ FG  K ++D+P +++ YM KELE++KF+TH + F EIN+AFDL+ KG+ +RC+I M
Sbjct:  174 VLSCGISTGLGATINVAKPPKGSTVAIFGLGAVGLAAAEGARIAGASRIIGIDLNANRFEEARKFGCTEFVNPKD-HDKPVQQVLAEMTNGGVDRSVECTGNINAMIQAFECVHDGWGVAVLVGVPHKDAEFKTHPMNFLNE-RTLKGTFFGNYKPRTDLPNVVELYMKKELEVEKFITHSVPFSEINTAFDLMHKGEGIRCIIRM 377          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADH1_ORYSI (Alcohol dehydrogenase 1 OS=Oryza sativa subsp. indica GN=ADH1 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.575e-50
Identity = 95/206 (46.12%), Postives = 140/206 (67.96%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM 618
            +LSCG+STG+GA    A    GSTV IFGLG++GLA AEGAR+ GA+RIIG+D+ + +FE  ++FG TEFVN K+  DK V Q++ +MT+GG D   EC G  + + +A+ C   GWG  +++GV    ++        L+  + L G+ FG  K ++D+P +++ YM KELE++KF+TH + F EIN+AFDL+ KG+ +RC+I M
Sbjct:  174 VLSCGISTGLGATINVAKPPKGSTVAIFGLGAVGLAAAEGARIAGASRIIGIDLNANRFEEARKFGCTEFVNPKD-HDKPVQQVLAEMTNGGVDRSVECTGNINAMIQAFECVHDGWGVAVLVGVPHKDAEFKTHPMNFLNE-RTLKGTFFGNYKPRTDLPNVVELYMKKELEVEKFITHSVPFSEINTAFDLMHKGEGIRCIIRM 377          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADHX_BOVIN (Alcohol dehydrogenase class-3 OS=Bos taurus GN=ADH5 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.633e-49
Identity = 91/204 (44.61%), Postives = 137/204 (67.16%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            LL CG+STG GAA   A VE GST  +FGLG +GLAV  G ++ GA RIIGVD+  +KF   K FG +E +N ++   K + +++I+MTDGG DY FEC+G   +++ A   C KGWG ++V+GV   G +++   F+++ +G+   G+ FGG K+   +P L+  YM K++++D+FVTH + F++IN AFDL+  GK +R V+
Sbjct:  171 LLGCGISTGYGAALNAAKVEPGSTCAVFGLGGVGLAVIMGCKMAGAARIIGVDINKDKFARAKEFGASECINPQDF-SKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGISVVVGVAASGEEIATRPFQLV-TGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHSLPFDQINEAFDLMHAGKSIRTVV 372          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADHX_UROHA (Alcohol dehydrogenase class-3 OS=Uromastyx hardwickii PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.207e-49
Identity = 91/204 (44.61%), Postives = 138/204 (67.65%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            LL CGVSTG GAA  TA VE GST  +FGLG +GLAV  G ++ GA+RIIG+D+  +KF   K FG TE ++  +   K + +++I+MTDGG DY FEC+G   +++ A   C KGWG ++++GV   G +++   F+++ +G+   G+ FGG K+   +P L+  YM K++++D+FVTH + FE+IN AF+L+  GK +R V+
Sbjct:  170 LLGCGVSTGYGAALNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDLNKDKFAKAKEFGATECISPADF-KKPIQEVLIEMTDGGVDYSFECIGNVGVMRAALEACHKGWGVSVIVGVAAAGQEIATRPFQLV-TGRTWKGTAFGGWKSVESVPKLVDEYMSKKMKVDEFVTHTLPFEQINEAFELMHAGKSIRSVL 371          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADHX_RAT (Alcohol dehydrogenase class-3 OS=Rattus norvegicus GN=Adh5 PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.383e-48
Identity = 91/206 (44.17%), Postives = 138/206 (66.99%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM 618
            LL CG+STG GAA  TA VE GST  +FGLG +GLAV  G ++ GA+RIIG+D+  +KF   K FG TE +N ++   KS+ +++I+MTDGG D+ FEC+G   +++ A     KGWG ++V+GV   G ++S   F+++ +G+   G+ FGG K+   +P L+  YM K++++D+FVT  + F++IN AFDL+  G  +R V+ M
Sbjct:  171 LLGCGISTGYGAAVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDINKDKFAKAKEFGATECINPQDF-SKSIQEVLIEMTDGGVDFSFECIGNVKVMRSALEAAHKGWGVSVVVGVAASGEEISTRPFQLV-TGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTGNLSFDQINKAFDLMHSGNSIRTVLKM 374          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADH2_ORYSJ (Alcohol dehydrogenase 2 OS=Oryza sativa subsp. japonica GN=ADH2 PE=2 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.383e-48
Identity = 98/208 (47.12%), Postives = 134/208 (64.42%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE 624
            +LSCG STG GA    A  + G TV IFGLG++GLA  EGARL GA+RIIGVD+   KFE  K+FG T+FVN K+   K V +++I+MT+GG D   EC G  + +   + C   GWG  +++GV              L+  K L G+ FG  K ++D+P +++ YM KELEL+KF+TH + F EIN+AFDL++KG+ LRCV+ M E
Sbjct:  174 ILSCGFSTGFGATVNVAKPKKGQTVAIFGLGAVGLAAMEGARLSGASRIIGVDLNPAKFEQAKKFGCTDFVNPKD-HSKPVHEVLIEMTNGGLDRAVECTGNINAMISCFECVHDGWGVAVLVGVPTKDDVFKTHPMNFLNE-KTLKGTFFGNYKPRTDLPNVVELYMKKELELEKFITHSVPFSEINTAFDLMLKGESLRCVMRMDE 379          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADH2_ORYSI (Alcohol dehydrogenase 2 OS=Oryza sativa subsp. indica GN=ADH2 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.383e-48
Identity = 98/208 (47.12%), Postives = 134/208 (64.42%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE 624
            +LSCG STG GA    A  + G TV IFGLG++GLA  EGARL GA+RIIGVD+   KFE  K+FG T+FVN K+   K V +++I+MT+GG D   EC G  + +   + C   GWG  +++GV              L+  K L G+ FG  K ++D+P +++ YM KELEL+KF+TH + F EIN+AFDL++KG+ LRCV+ M E
Sbjct:  174 ILSCGFSTGFGATVNVAKPKKGQTVAIFGLGAVGLAAMEGARLSGASRIIGVDLNPAKFEQAKKFGCTDFVNPKD-HSKPVHEVLIEMTNGGLDRAVECTGNINAMISCFECVHDGWGVAVLVGVPTKDDVFKTHPMNFLNE-KTLKGTFFGNYKPRTDLPNVVELYMKKELELEKFITHSVPFSEINTAFDLMLKGESLRCVMRMDE 379          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADHL4_ARATH (Alcohol dehydrogenase-like 4 OS=Arabidopsis thaliana GN=At1g64710 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.080e-48
Identity = 92/204 (45.10%), Postives = 138/204 (67.65%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            LLSCGVSTGVGAAW  A+++  STV IFGLG++GLAVAEGAR  GA++IIG+D+  +KF++G+  G++EF+N K   DK+V + ++++T+GG +Y FEC G    ++EA+     G G T++LGV      L +   E L  G+ +  S+FGG K K+ +P  + + +   L LD F++H++ F +IN A  LL +GK LRC++
Sbjct:  177 LLSCGVSTGVGAAWNVADIQPASTVAIFGLGAVGLAVAEGARARGASKIIGIDINPDKFQLGREAGISEFINPKE-SDKAVHERVMEITEGGVEYSFECAGSIEALREAFLSTNSGVGVTVMLGVHASPQLLPIHPME-LFQGRSITASVFGGFKPKTQLPFFITQCLQGLLNLDLFISHQLPFHDINEAMQLLHQGKALRCLL 378          
The following BLAST results are available for this feature:
BLAST of CX299917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
ADH1_PENAM7.332e-5046.60Alcohol dehydrogenase 1 OS=Pennisetum americanum G... [more]
ADHX_HUMAN9.575e-5044.61Alcohol dehydrogenase class-3 OS=Homo sapiens GN=A... [more]
ADH1_ORYSJ9.575e-5046.12Alcohol dehydrogenase 1 OS=Oryza sativa subsp. jap... [more]
ADH1_ORYSI9.575e-5046.12Alcohol dehydrogenase 1 OS=Oryza sativa subsp. ind... [more]
ADHX_BOVIN1.633e-4944.61Alcohol dehydrogenase class-3 OS=Bos taurus GN=ADH... [more]
ADHX_UROHA6.207e-4944.61Alcohol dehydrogenase class-3 OS=Uromastyx hardwic... [more]
ADHX_RAT1.383e-4844.17Alcohol dehydrogenase class-3 OS=Rattus norvegicus... [more]
ADH2_ORYSJ1.383e-4847.12Alcohol dehydrogenase 2 OS=Oryza sativa subsp. jap... [more]
ADH2_ORYSI1.383e-4847.12Alcohol dehydrogenase 2 OS=Oryza sativa subsp. ind... [more]
ADHL4_ARATH3.080e-4845.10Alcohol dehydrogenase-like 4 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionC07004A03SK SaltLeaf1 Citrus clementina cDNA clone C07004A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299917 ID=CX299917; Name=CX299917; organism=Citrus clementina; type=EST; length=719bp
CTTCTAAGCTGTGGAGTATCAACAGGCGTGGGAGCTGCTTGGAGAACAGC
AAATGTAGAGGTTGGATCAACTGTTGTTATATTTGGGCTTGGTTCAATTG
GATTAGCGGTTGCAGAGGGAGCGAGATTATGTGGTGCTACAAGGATTATA
GGCGTGGATGTGATCTCGGAAAAATTTGAAATTGGAAAAAGGTTTGGAGT
TACAGAGTTTGTGAATTCTAAAAACTGTGGGGATAAATCTGTAAGCCAGA
TAATCATTGACATGACTGATGGGGGTGCTGATTACTGCTTTGAATGTGTT
GGTTTGGCATCCTTGGTGCAAGAAGCATATGCTTGTTGCCGAAAGGGTTG
GGGGAAAACAATTGTGTTGGGAGTGGACCAGCCGGGGTCACAGTTGAGCC
TGAGCTCTTTTGAGGTCCTTCACAGTGGAAAAATTCTGATGGGATCATTG
TTTGGAGGTCTCAAAGCTAAATCTGATATTCCTATTCTTTTGAAACGTTA
CATGGATAAGGAACTAGAGCTGGATAAGTTTGTCACTCATGAGATGAAGT
TTGAAGAAATCAATAGCGCGTTTGATTTACTTATAAAAGGAAAGTGTCTC
CGTTGTGTGATATGGATGGGCGAATAAGATTTCTTGCATTATTTTCTTGT
ATGTACTTTCTCCAATATTACCTCTCATATCTAAGCAATTGACCACCATT
TGTGATGGACATGTGTATA
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