CX299917

Overview
NameCX299917
Unique NameCX299917
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADH1_MAIZE (Alcohol dehydrogenase 1 OS=Zea mays GN=ADH1 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.080e-48
Identity = 93/206 (45.15%), Postives = 138/206 (66.99%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM 618
            +LSCG STG+GA+   A    GSTV +FGLG++GLA AEGAR+ GA+RIIGVD+   +FE  ++FG TEFVN K+  +K V +++ +MT+GG D   EC G  + + +A+ C   GWG  +++GV    ++        L+  + L G+ FG  K ++D+P +++ YM KELE++KF+TH + F EIN AFDL+ KG+ +RC+I M
Sbjct:  174 VLSCGYSTGLGASINVAKPPKGSTVAVFGLGAVGLAAAEGARIAGASRIIGVDLNPSRFEEARKFGCTEFVNPKD-HNKPVQEVLAEMTNGGVDRSVECTGNINAMIQAFECVHDGWGVAVLVGVPHKDAEFKTHPMNFLNE-RTLKGTFFGNYKPRTDLPNVVELYMKKELEVEKFITHSVPFAEINKAFDLMAKGEGIRCIIRM 377          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: FADH_YEAST (S-(hydroxymethyl)glutathione dehydrogenase OS=Saccharomyces cerevisiae GN=SFA1 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.254e-48
Identity = 89/206 (43.20%), Postives = 144/206 (69.90%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN--CGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            LL CGV+TG GAA +TANV+ G TV +FG G++GL+V +GA+L GA++II +D+ ++K +   +FG T+FVN K     D+++ + +I+MTDGG D+ F+C G   ++++A   C KGWG++I++GV   G ++S   F+++ +G++  GS FGG+K +S++  L+K Y    L++++F+TH   F+EIN AF+ L  G CLR V+
Sbjct:  176 LLGCGVTTGFGAALKTANVQKGDTVAVFGCGTVGLSVIQGAKLRGASKIIAIDINNKKKQYCSQFGATDFVNPKEDLAKDQTIVEKLIEMTDGGLDFTFDCTGNTKIMRDALEACHKGWGQSIIIGVAAAGEEISTRPFQLV-TGRVWKGSAFGGIKGRSEMGGLIKDYQKGALKVEEFITHRRPFKEINQAFEDLHNGDCLRTVL 380          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADHX_MOUSE (Alcohol dehydrogenase class-3 OS=Mus musculus GN=Adh5 PE=1 SV=3)

HSP 1 Score: 190.274 bits (482), Expect = 8.962e-48
Identity = 89/206 (43.20%), Postives = 138/206 (66.99%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM 618
            LL CG+STG GAA  TA VE GST  +FGLG +GLAV  G ++ GA+RIIG+D+  +KF   K FG +E ++ ++   KS+ +++++MTDGG DY FEC+G   +++ A     KGWG ++V+GV   G ++S   F+++ +G+   G+ FGG K+   +P L+  YM K++++D+FVT  + F++IN AFDL+  G  +R V+ M
Sbjct:  171 LLGCGISTGYGAAVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDINKDKFAKAKEFGASECISPQDF-SKSIQEVLVEMTDGGVDYSFECIGNVKVMRSALEAAHKGWGVSVVVGVAASGEEISTRPFQLV-TGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTGNLSFDQINQAFDLMHSGDSIRTVLKM 374          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADHX_RABIT (Alcohol dehydrogenase class-3 OS=Oryctolagus cuniculus GN=ADH5 PE=2 SV=3)

HSP 1 Score: 189.119 bits (479), Expect = 1.997e-47
Identity = 88/204 (43.14%), Postives = 134/204 (65.69%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            LL CG+STG GAA  TA VE GST  +FGLG +GLA   G +  GA+RII VD+  +KF   K FG TE +N ++   K + +++++ TDGG DY FEC+G   +++ A   C KGWG ++V+GV   G ++S   F+++ +G+   G+ FGG K+   +P L+  YM K++ +D+FVT+ + F++IN AF+L+  GK +R V+
Sbjct:  171 LLGCGISTGYGAALNTAKVEPGSTCAVFGLGGVGLAAIMGCKAAGASRIIAVDINKDKFARAKEFGATECINPQDF-SKPIQEVLVEKTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAGAGEEISTRPFQLV-TGRTWKGTAFGGWKSVESVPKLVSEYMSKKINVDEFVTNTLSFDQINEAFELMHSGKSIRTVV 372          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADH3_HORVU (Alcohol dehydrogenase 3 OS=Hordeum vulgare GN=ADH3 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.448e-47
Identity = 91/203 (44.83%), Postives = 134/203 (66.01%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCV 609
            +LSCG+STG+GA    A  + GSTV IFGLG++GLA  EGAR+ GA+RIIGVD+   K+E  K+FG T+FVN K+   K V +++++MT+GG D   EC G    +   + C   GWG  +++GV    +         L+  K L G+ FG  K ++D+P +++ YM KEL+L+KF+TH + F +IN+AFDL++KG+ LRC+
Sbjct:  174 VLSCGLSTGLGATLNVAKPKKGSTVAIFGLGAVGLAAMEGARMAGASRIIGVDLNPAKYEQAKKFGCTDFVNPKD-HTKPVQEVLVEMTNGGVDRAVECTGHIDAMIATFECVHDGWGVAVLVGVPHKEAVFKTHPMNFLNE-KTLKGTFFGNYKPRTDLPEVVEMYMRKELDLEKFITHSVPFSQINTAFDLMLKGEGLRCI 374          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: FRMA_SYNY3 (S-(hydroxymethyl)glutathione dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=frmA PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.207e-46
Identity = 88/204 (43.14%), Postives = 138/204 (67.65%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            LL CGV+TG+GA   TA V+ G +V +FGLG IGLAV +GAR   A RII +D    KFE+ K+ G T+ +N K+  D+ + Q+I++MT  G D+ FEC+G   +++ A  C  +GWG+++++GV   G ++S   F+++ +G+  MG+ FGG+K +S +P ++++ M  E++L  FVTH M+ ++IN AFDL+  GK +R VI
Sbjct:  166 LLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGGIGLAVVQGARQAKAGRIIAIDTNPAKFELAKQMGATDCINPKD-HDQPIQQVIVEMTGWGVDHSFECIGNVEVMRSALECAHRGWGQSVIIGVAGAGQEISTRPFQLV-TGRKWMGTAFGGVKGRSQLPGMVEQSMRGEIQLAPFVTHTMELKDINQAFDLMHDGKSIRSVI 367          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: FADH1_SCHPO (Probable S-(hydroxymethyl)glutathione dehydrogenase 1 OS=Schizosaccharomyces pombe GN=SPBC1539.07c PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 2.207e-46
Identity = 89/208 (42.79%), Postives = 134/208 (64.42%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE 624
            LL CGV+TG GA   +A VE GSTV + G G +GLA  +GA   GA+RII +D+ ++K    K+FG T+F++S     K + Q +ID+TDGG DY F+C G  +++Q+    C KGWGK  V+GV   G  L    F V+ +G+ ++GS FGG+K +S++P  +  YM    ++D+++T+E   + IN AFD + +GKC+RCV+ M +
Sbjct:  173 LLGCGVTTGFGAVTHSAKVESGSTVAVVGCGCVGLAAMQGAVAAGASRIIAIDINADKEVYAKKFGATDFIDSSKV--KDLVQYVIDVTDGGVDYAFDCTGNVTVMQQELQFCHKGWGKLCVIGVAAAGKTLDFRPFLVV-TGRQVLGSAFGGVKGRSELPNFVDEYMQGHFKVDEYITNEEPLKNINKAFDHMHEGKCIRCVVDMNK 377          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADHX_MYXGL (Alcohol dehydrogenase class-3 OS=Myxine glutinosa PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.918e-46
Identity = 93/204 (45.59%), Postives = 133/204 (65.20%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            LL CGVSTG GA   TA VE GST  IFGLG++GLA   G R+ GA+RII +D   +KFE  + FG T+ V   +  DK +SQ++ +MTDGG DY FECVG   +++ A   C KGWG +++LGV   G ++S   F+++ +G+   G+ FGG K+   +P L+  YM  ++ +D+FV+H + F+ IN AFDL+  GK +R V+
Sbjct:  173 LLGCGVSTGYGAPLNTAKVEPGSTCAIFGLGAVGLAAIMGCRVAGASRIIAIDRNPDKFEKARIFGATDCV-VPDASDKPISQVLGEMTDGGLDYTFECVGNVGIMRAALESCHKGWGVSVILGVAGGGQEISTRPFQLV-TGRTWKGAAFGGWKSVESVPKLVDDYMAGKIMVDEFVSHSLPFDSINEAFDLMHAGKSIRTVL 374          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: FADH_PARDE (S-(hydroxymethyl)glutathione dehydrogenase OS=Paracoccus denitrificans GN=flhA PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.423e-46
Identity = 85/209 (40.67%), Postives = 140/209 (66.99%), Query Frame = 1
Query:    4 LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD------GGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            + CGV+TG+GA   TA VE+G+  V+FGLG IGL V +G RL GA  IIGVD+  +K  + + FG+T F+N KNC  ++V Q I+++T       GGADY F+C G   ++++A  C  +GWG++I++GV   G+++S   F+++ +G++  G+ FGG + ++D+P ++  YMD ++E+D  +TH +  ++IN  FDL+  G+ +R V+
Sbjct:  168 IGCGVTTGIGAVINTAKVEIGAKAVVFGLGGIGLNVLQGLRLAGADMIIGVDLNDDKKPMAEHFGMTHFINPKNC--ENVVQEIVNLTKTPFDQIGGADYSFDCTGNVKVMRDALECTHRGWGQSIIIGVAPAGAEISTRPFQLV-TGRVWKGTAFGGARGRTDVPQIVDWYMDGKIEIDPMITHTLSLDDINKGFDLMHAGESIRSVV 373          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: FRMA_ECOUT (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.431e-45
Identity = 86/204 (42.16%), Postives = 138/204 (67.65%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            LL CGV+TG+GA   TA V+ G +V +FGLG+IGLAV +GAR   A RII +D   +KFE+ +RFG T+ +N  N  DK +  +++D+   G D+ FEC+G  ++++ A     +GWG+++++GV   G ++S   F+++ +G++  GS FGG+K +S +P +++  M  +++L+ FVTH M  +EIN AFDL+ +GK +R VI
Sbjct:  166 LLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFELARRFGATDCIN-PNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLV-TGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367          
The following BLAST results are available for this feature:
BLAST of CX299917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
ADH1_MAIZE3.080e-4845.15Alcohol dehydrogenase 1 OS=Zea mays GN=ADH1 PE=2 S... [more]
FADH_YEAST5.254e-4843.20S-(hydroxymethyl)glutathione dehydrogenase OS=Sacc... [more]
ADHX_MOUSE8.962e-4843.20Alcohol dehydrogenase class-3 OS=Mus musculus GN=A... [more]
ADHX_RABIT1.997e-4743.14Alcohol dehydrogenase class-3 OS=Oryctolagus cunic... [more]
ADH3_HORVU4.448e-4744.83Alcohol dehydrogenase 3 OS=Hordeum vulgare GN=ADH3... [more]
FRMA_SYNY32.207e-4643.14S-(hydroxymethyl)glutathione dehydrogenase OS=Syne... [more]
FADH1_SCHPO2.207e-4642.79Probable S-(hydroxymethyl)glutathione dehydrogenas... [more]
ADHX_MYXGL4.918e-4645.59Alcohol dehydrogenase class-3 OS=Myxine glutinosa ... [more]
FADH_PARDE6.423e-4640.67S-(hydroxymethyl)glutathione dehydrogenase OS=Para... [more]
FRMA_ECOUT1.431e-4542.16S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07004A03SK SaltLeaf1 Citrus clementina cDNA clone C07004A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299917 ID=CX299917; Name=CX299917; organism=Citrus clementina; type=EST; length=719bp
CTTCTAAGCTGTGGAGTATCAACAGGCGTGGGAGCTGCTTGGAGAACAGC
AAATGTAGAGGTTGGATCAACTGTTGTTATATTTGGGCTTGGTTCAATTG
GATTAGCGGTTGCAGAGGGAGCGAGATTATGTGGTGCTACAAGGATTATA
GGCGTGGATGTGATCTCGGAAAAATTTGAAATTGGAAAAAGGTTTGGAGT
TACAGAGTTTGTGAATTCTAAAAACTGTGGGGATAAATCTGTAAGCCAGA
TAATCATTGACATGACTGATGGGGGTGCTGATTACTGCTTTGAATGTGTT
GGTTTGGCATCCTTGGTGCAAGAAGCATATGCTTGTTGCCGAAAGGGTTG
GGGGAAAACAATTGTGTTGGGAGTGGACCAGCCGGGGTCACAGTTGAGCC
TGAGCTCTTTTGAGGTCCTTCACAGTGGAAAAATTCTGATGGGATCATTG
TTTGGAGGTCTCAAAGCTAAATCTGATATTCCTATTCTTTTGAAACGTTA
CATGGATAAGGAACTAGAGCTGGATAAGTTTGTCACTCATGAGATGAAGT
TTGAAGAAATCAATAGCGCGTTTGATTTACTTATAAAAGGAAAGTGTCTC
CGTTGTGTGATATGGATGGGCGAATAAGATTTCTTGCATTATTTTCTTGT
ATGTACTTTCTCCAATATTACCTCTCATATCTAAGCAATTGACCACCATT
TGTGATGGACATGTGTATA
back to top