CX299917

Overview
NameCX299917
Unique NameCX299917
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: FRMA_ECOL6 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O6 GN=frmA PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.431e-45
Identity = 86/204 (42.16%), Postives = 138/204 (67.65%), Query Frame = 1 
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            LL CGV+TG+GA   TA V+ G +V +FGLG+IGLAV +GAR   A RII +D   +KFE+ +RFG T+ +N  N  DK +  +++D+   G D+ FEC+G  ++++ A     +GWG+++++GV   G ++S   F+++ +G++  GS FGG+K +S +P +++  M  +++L+ FVTH M  +EIN AFDL+ +GK +R VI
Sbjct:  166 LLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFELARRFGATDCIN-PNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLV-TGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367
[Close]
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: FRMA_ECOL5 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.431e-45
Identity = 86/204 (42.16%), Postives = 138/204 (67.65%), Query Frame = 1 
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            LL CGV+TG+GA   TA V+ G +V +FGLG+IGLAV +GAR   A RII +D   +KFE+ +RFG T+ +N  N  DK +  +++D+   G D+ FEC+G  ++++ A     +GWG+++++GV   G ++S   F+++ +G++  GS FGG+K +S +P +++  M  +++L+ FVTH M  +EIN AFDL+ +GK +R VI
Sbjct:  166 LLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFELARRFGATDCIN-PNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLV-TGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367
[Close]
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: FRMA_ECOK1 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O1:K1 / APEC GN=frmA PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.431e-45
Identity = 86/204 (42.16%), Postives = 138/204 (67.65%), Query Frame = 1 
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            LL CGV+TG+GA   TA V+ G +V +FGLG+IGLAV +GAR   A RII +D   +KFE+ +RFG T+ +N  N  DK +  +++D+   G D+ FEC+G  ++++ A     +GWG+++++GV   G ++S   F+++ +G++  GS FGG+K +S +P +++  M  +++L+ FVTH M  +EIN AFDL+ +GK +R VI
Sbjct:  166 LLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFELARRFGATDCIN-PNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLV-TGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367
[Close]
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: FRMA_SHISS (S-(hydroxymethyl)glutathione dehydrogenase OS=Shigella sonnei (strain Ss046) GN=frmA PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.188e-45
Identity = 85/204 (41.67%), Postives = 138/204 (67.65%), Query Frame = 1 
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            LL CGV+TG+GA   TA V+ G +V +FGLG+IGLAV +GAR   A RII +D   +KF++ +RFG T+ +N  N  DK +  +++D+   G D+ FEC+G  ++++ A     +GWG+++++GV   G ++S   F+++ +G++  GS FGG+K +S +P +++  M  +++L+ FVTH M  +EIN AFDL+ +GK +R VI
Sbjct:  166 LLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCIN-PNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLV-TGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367
[Close]
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: FRMA_ECOLI (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain K12) GN=frmA PE=1 SV=3)

HSP 1 Score: 181.8 bits (460), Expect = 3.188e-45
Identity = 85/204 (41.67%), Postives = 138/204 (67.65%), Query Frame = 1 
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            LL CGV+TG+GA   TA V+ G +V +FGLG+IGLAV +GAR   A RII +D   +KF++ +RFG T+ +N  N  DK +  +++D+   G D+ FEC+G  ++++ A     +GWG+++++GV   G ++S   F+++ +G++  GS FGG+K +S +P +++  M  +++L+ FVTH M  +EIN AFDL+ +GK +R VI
Sbjct:  166 LLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCIN-PNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAVAGQEISTRPFQLV-TGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367
[Close]
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: FRMA_ECOLC (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=frmA PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.188e-45
Identity = 85/204 (41.67%), Postives = 138/204 (67.65%), Query Frame = 1 
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            LL CGV+TG+GA   TA V+ G +V +FGLG+IGLAV +GAR   A RII +D   +KF++ +RFG T+ +N  N  DK +  +++D+   G D+ FEC+G  ++++ A     +GWG+++++GV   G ++S   F+++ +G++  GS FGG+K +S +P +++  M  +++L+ FVTH M  +EIN AFDL+ +GK +R VI
Sbjct:  166 LLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCIN-PNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLV-TGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367
[Close]
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: FRMA_ECOHS (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=frmA PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.188e-45
Identity = 85/204 (41.67%), Postives = 138/204 (67.65%), Query Frame = 1 
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            LL CGV+TG+GA   TA V+ G +V +FGLG+IGLAV +GAR   A RII +D   +KF++ +RFG T+ +N  N  DK +  +++D+   G D+ FEC+G  ++++ A     +GWG+++++GV   G ++S   F+++ +G++  GS FGG+K +S +P +++  M  +++L+ FVTH M  +EIN AFDL+ +GK +R VI
Sbjct:  166 LLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCIN-PNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLV-TGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367
[Close]
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: FRMA_ECO57 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O157:H7 GN=frmA PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.188e-45
Identity = 85/204 (41.67%), Postives = 138/204 (67.65%), Query Frame = 1 
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            LL CGV+TG+GA   TA V+ G +V +FGLG+IGLAV +GAR   A RII +D   +KF++ +RFG T+ +N  N  DK +  +++D+   G D+ FEC+G  ++++ A     +GWG+++++GV   G ++S   F+++ +G++  GS FGG+K +S +P +++  M  +++L+ FVTH M  +EIN AFDL+ +GK +R VI
Sbjct:  166 LLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCIN-PNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLV-TGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367
[Close]
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: FRMA_ECO24 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.188e-45
Identity = 85/204 (41.67%), Postives = 138/204 (67.65%), Query Frame = 1 
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            LL CGV+TG+GA   TA V+ G +V +FGLG+IGLAV +GAR   A RII +D   +KF++ +RFG T+ +N  N  DK +  +++D+   G D+ FEC+G  ++++ A     +GWG+++++GV   G ++S   F+++ +G++  GS FGG+K +S +P +++  M  +++L+ FVTH M  +EIN AFDL+ +GK +R VI
Sbjct:  166 LLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCIN-PNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLV-TGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367
[Close]
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADH1_GADCA (Alcohol dehydrogenase 1 OS=Gadus callarias PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.163e-45
Identity = 91/204 (44.61%), Postives = 131/204 (64.22%), Query Frame = 1 
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            LL CGVSTG GAA  TA VE GST  +FGLG++GLA   G    GA RII VD+  +KFE  K FG T+FVN  N   + +SQ++  MT+GG D+  ECVG   +++ A   C KGWG ++++G       ++    +++ +G+   GS+FGG K K  +P ++K Y+DK+++LD+F+TH M  E +N A DL+  GKC+R V+
Sbjct:  172 LLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVN-PNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDL-HDVATRPIQLI-AGRTWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVL 372
The following BLAST results are available for this feature:
BLAST of CX299917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
FRMA_ECOL61.431e-4542.16S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOL51.431e-4542.16S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOK11.431e-4542.16S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_SHISS3.188e-4541.67S-(hydroxymethyl)glutathione dehydrogenase OS=Shig... [more]
FRMA_ECOLI3.188e-4541.67S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOLC3.188e-4541.67S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOHS3.188e-4541.67S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECO573.188e-4541.67S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECO243.188e-4541.67S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
ADH1_GADCA4.163e-4544.61Alcohol dehydrogenase 1 OS=Gadus callarias PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionC07004A03SK SaltLeaf1 Citrus clementina cDNA clone C07004A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299917 ID=CX299917; Name=CX299917; organism=Citrus clementina; type=EST; length=719bp
CTTCTAAGCTGTGGAGTATCAACAGGCGTGGGAGCTGCTTGGAGAACAGC
AAATGTAGAGGTTGGATCAACTGTTGTTATATTTGGGCTTGGTTCAATTG
GATTAGCGGTTGCAGAGGGAGCGAGATTATGTGGTGCTACAAGGATTATA
GGCGTGGATGTGATCTCGGAAAAATTTGAAATTGGAAAAAGGTTTGGAGT
TACAGAGTTTGTGAATTCTAAAAACTGTGGGGATAAATCTGTAAGCCAGA
TAATCATTGACATGACTGATGGGGGTGCTGATTACTGCTTTGAATGTGTT
GGTTTGGCATCCTTGGTGCAAGAAGCATATGCTTGTTGCCGAAAGGGTTG
GGGGAAAACAATTGTGTTGGGAGTGGACCAGCCGGGGTCACAGTTGAGCC
TGAGCTCTTTTGAGGTCCTTCACAGTGGAAAAATTCTGATGGGATCATTG
TTTGGAGGTCTCAAAGCTAAATCTGATATTCCTATTCTTTTGAAACGTTA
CATGGATAAGGAACTAGAGCTGGATAAGTTTGTCACTCATGAGATGAAGT
TTGAAGAAATCAATAGCGCGTTTGATTTACTTATAAAAGGAAAGTGTCTC
CGTTGTGTGATATGGATGGGCGAATAAGATTTCTTGCATTATTTTCTTGT
ATGTACTTTCTCCAATATTACCTCTCATATCTAAGCAATTGACCACCATT
TGTGATGGACATGTGTATA
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