CX299917

Overview
NameCX299917
Unique NameCX299917
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: FRMA_PASPI (S-(hydroxymethyl)glutathione dehydrogenase OS=Pasteurella piscicida GN=frmA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.437e-45
Identity = 86/204 (42.16%), Postives = 136/204 (66.67%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            LL CGV+TG+GA   TA V+ G +V +FGLG IGLAV +GAR   A RI  +D    KFE+ K+FG T+ +N  N  DK V Q++++MT  G D+ FEC+G  ++++ A     +GWG+++++GV   G ++S   F+++ +G++  G+ FGG+K ++ +P +++  M  ++EL  FVTH M+ ++IN AFDL+  GK +R VI
Sbjct:  166 LLGCGVTTGIGAVHNTAKVQEGDSVAVFGLGGIGLAVVQGARQAKAGRIFAIDTNPSKFELAKQFGATDCIN-PNDYDKPVQQVLVEMTKWGVDHTFECIGNVNVMRSALESAHRGWGQSVIIGVAGAGKEISTRPFQLV-TGRVWKGTAFGGVKGRTQLPGMVEDAMSGKIELAPFVTHTMELDKINEAFDLMHDGKSIRTVI 367          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADH1_ZEALU (Alcohol dehydrogenase 1 (Fragment) OS=Zea luxurians GN=ADH1 PE=3 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 7.101e-45
Identity = 87/194 (44.85%), Postives = 130/194 (67.01%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLL 582
            +LSCG+STG+GA+   A    GSTV +FGLG++GLA AEGAR+ GA+RIIGVD+   +FE  ++FG TEFVN K+  +K V +++ +MT+GG D   EC G  + + +A+ C   GWG  +++GV    ++        L+  + L G+ FG  K ++D+P +++ YM KELE++KF+TH + F EIN AFDL+
Sbjct:  101 VLSCGISTGLGASINVAKPPKGSTVAVFGLGAVGLAAAEGARIAGASRIIGVDLNPSRFEEARKFGCTEFVNPKD-HNKPVQEVLAEMTNGGVDRSVECTGNINAMIQAFECVHDGWGVAVLVGVPHKDAEFKTHPMNFLNE-RTLKGTFFGNYKPRTDLPNVVELYMKKELEVEKFITHSVPFAEINKAFDLM 292          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: FRMA_HAEIN (S-(hydroxymethyl)glutathione dehydrogenase OS=Haemophilus influenzae GN=frmA PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.274e-45
Identity = 85/204 (41.67%), Postives = 139/204 (68.14%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            LL CGV+TG+GA   TA V+ G +V +FGLG+IGLAV +GAR   A RII +D    KFE+ K+FG T+ +N  N  DK +  +++D+   G D+ FEC+G  +++++A     +GWG++I++GV   G ++S   F+++ +G++  GS FGG+K +S++P +++  M  +++L+ FVTH M  ++IN AF+L+ +GK +R VI
Sbjct:  175 LLGCGVTTGIGAVHNTAKVQEGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPAKFELAKQFGATDCLN-PNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRQALESAHRGWGQSIIIGVAGAGQEISTRPFQLV-TGRVWKGSAFGGVKGRSELPQMVEDSMKGDIQLEPFVTHTMPLDKINEAFELMHEGKSIRTVI 376          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADHX_CAEEL (Alcohol dehydrogenase class-3 OS=Caenorhabditis elegans GN=H24K24.3 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.274e-45
Identity = 88/207 (42.51%), Postives = 133/207 (64.25%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC---GDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            LL CG+STG GA   T  VE GSTV ++GLG++GLAV  GA+  GA +I+G+D+I  KFE  K FG TE +N K+      KS    +++  DGG DY FEC+G    +++A     KGWG + ++GV   G +++   F+++ +G+   G+ FGG K+   +P L+  YM+K+L +D+F+TH    ++IN+AFD+L KG+ LR V+
Sbjct:  174 LLGCGISTGYGAVLNTCKVEEGSTVAVWGLGAVGLAVIMGAKAAGAKKIVGIDLIESKFESAKFFGATECINPKSVELPEGKSFQAWLVEQFDGGFDYTFECIGNVHTMRQALEAAHKGWGVSCIIGVAGAGQEIATRPFQLV-TGRTWKGTAFGGWKSVESVPRLVDDYMNKKLLIDEFITHRWNIDDINTAFDVLHKGESLRSVL 379          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADH6_PONAB (Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.274e-45
Identity = 89/204 (43.63%), Postives = 130/204 (63.73%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            L+SCG STG GAA  TA V  GST  +FGLG +G +V  G +  GATRIIGVDV  EKF+  +  G TE +N ++   K + +++ DMTD G D+CFE +G   ++  A A C + +G  +V+G+     QL +S  ++  SG+ L GS+FGG K++  IP L+  YM K+L LD  +TH +  ++IN A +L+  GKC+RC++
Sbjct:  172 LISCGFSTGFGAAINTAKVTPGSTCAVFGLGGVGSSVVMGCKAAGATRIIGVDVNKEKFKKARELGATECLNPQDL-KKPIQEVLFDMTDAGIDFCFEAIGNLDVLAAALASCNESYGVCVVVGLLPASVQLKISG-QLFFSGRSLKGSVFGGWKSRQHIPKLVADYMAKKLNLDPLITHTLNLDKINEAVELMKTGKCIRCIL 373          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: FRMA_ECOSM (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.066e-44
Identity = 84/204 (41.18%), Postives = 137/204 (67.16%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            LL CGV+TG+GA   TA V+   +V +FGLG+IGLAV +GAR   A RII +D   +KF++ +RFG T+ +N  N  DK +  +++D+   G D+ FEC+G  ++++ A     +GWG+++++GV   G ++S   F+++ +G++  GS FGG+K +S +P +++  M  +++L+ FVTH M  +EIN AFDL+ +GK +R VI
Sbjct:  166 LLGCGVTTGIGAVHNTAKVQPDDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCIN-PNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLV-TGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: FADH2_SCHPO (Putative S-(hydroxymethyl)glutathione dehydrogenase 2 OS=Schizosaccharomyces pombe GN=SPCC13B11.04c PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 3.524e-44
Identity = 85/204 (41.67%), Postives = 131/204 (64.22%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            LL CG++TG GAA  TA+++ G +V +FGLGS+GLAV +GA    A RI G+DV  EK      FG T+F+N  +     +  ++I  TDGG D+ F+C G   +++ A   C KGWG++IV+GV   G ++S   F+++ +G++  G  FGG+K +S +P L+K Y+D +LE+DK++TH    +EIN AF  +  G C++ V+
Sbjct:  176 LLGCGITTGYGAATITADIKEGDSVAVFGLGSVGLAVIQGAVKKRAGRIFGIDVNPEKKNWAMSFGATDFINPNDL-QSPIQDVLIHETDGGLDWTFDCTGNVHVMRSALEACHKGWGQSIVIGVAAAGQEISTRPFQLV-TGRVWRGCAFGGVKGRSQLPDLVKEYLDHKLEIDKYITHRRPLKEINEAFTDMHNGNCIKTVL 377          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADHI_RHOS4 (Alcohol dehydrogenase class-3 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=adhI PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.603e-44
Identity = 86/209 (41.15%), Postives = 136/209 (65.07%), Query Frame = 1
Query:    4 LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD------GGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            + CGV+TG+GA   TA VE+G+  V+FGLG IGL V +G +L GA  IIGVD+ + K E G+RFG+T FVN     D  V   +++MT       GGADY F+C G   ++++A   C +GWG++IV+GV   G+++    F+++ +G++  GS FGG + ++D+P ++  YM+ ++++D  +TH +  EEIN  FDL+  G+ +R V+
Sbjct:  168 IGCGVTTGIGAVINTAKVEIGAKAVVFGLGGIGLNVIQGLKLAGADMIIGVDLNNAKKEWGERFGMTHFVNPSEI-DGDVVAHLVNMTKTPFDQIGGADYTFDCTGNVKVMRQALEACHRGWGQSIVIGVAPAGAEIQTRPFQLV-TGRVWKGSAFGGARGRTDVPKIVDWYMEGKIQIDPMITHILSLEEINKGFDLMHAGESIRSVV 374          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADH2_HORVU (Alcohol dehydrogenase 2 OS=Hordeum vulgare GN=ADH2 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.012e-44
Identity = 93/204 (45.59%), Postives = 128/204 (62.75%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            LLSCG+STG+GA       + G TV IFGLG++GLA  EGAR+ GA+RIIGVD+   K E  K+FG T+FVN K+   K V ++I++MTDGG +   EC G A  +  A+ C   GWG      V +      L+        + L G+ FG  K ++ +P ++  YM KELELDKF+TH + F +IN+AFDL+++G+ LRCVI
Sbjct:  174 LLSCGISTGLGATLNVTKPKKGMTVAIFGLGAVGLAAMEGARMSGASRIIGVDLNPAKHEQAKKFGCTDFVNPKD-HTKPVQEVIVEMTDGGVNRAVECTGNADAMISAFECVHDGWGVAHKEAVFKTHPMNFLNE-------RTLRGTFFGNYKPRTGLPGVVDMYMRKELELDKFITHSLPFSQINTAFDLMLRGEGLRCVI 369          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADH1_ALLMI (Alcohol dehydrogenase 1 OS=Alligator mississippiensis PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.681e-43
Identity = 82/204 (40.20%), Postives = 128/204 (62.75%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            L+ CG STG GAA + A VE GST  +FGLG +GL+   G +  GA+RIIG+D+  +KF   K  G TE +N  +C  K + +++ +MT GG DY FE +G    +  A ACC+  +G ++++GV     +++ +   +L +G+   GS+FGG K+K  +P L+  YM+K++ LD  +TH + F++IN  F+LL  GK +R V+
Sbjct:  171 LIGCGFSTGYGAAVKDAKVEPGSTCAVFGLGGVGLSTIMGCKAAGASRIIGIDINKDKFAKAKELGATECINPLDC-KKPIQEVLSEMTGGGVDYSFEVIGRIDTMTAALACCQDNYGTSVIVGVPPASEKITFNPM-MLFTGRTWKGSVFGGWKSKESVPKLVADYMEKKINLDGLITHTLPFDKINEGFELLRTGKSIRSVL 372          
The following BLAST results are available for this feature:
BLAST of CX299917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
FRMA_PASPI5.437e-4542.16S-(hydroxymethyl)glutathione dehydrogenase OS=Past... [more]
ADH1_ZEALU7.101e-4544.85Alcohol dehydrogenase 1 (Fragment) OS=Zea luxurian... [more]
FRMA_HAEIN9.274e-4541.67S-(hydroxymethyl)glutathione dehydrogenase OS=Haem... [more]
ADHX_CAEEL9.274e-4542.51Alcohol dehydrogenase class-3 OS=Caenorhabditis el... [more]
ADH6_PONAB9.274e-4543.63Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE... [more]
FRMA_ECOSM2.066e-4441.18S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FADH2_SCHPO3.524e-4441.67Putative S-(hydroxymethyl)glutathione dehydrogenas... [more]
ADHI_RHOS44.603e-4441.15Alcohol dehydrogenase class-3 OS=Rhodobacter sphae... [more]
ADH2_HORVU6.012e-4445.59Alcohol dehydrogenase 2 OS=Hordeum vulgare GN=ADH2... [more]
ADH1_ALLMI8.681e-4340.20Alcohol dehydrogenase 1 OS=Alligator mississippien... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07004A03SK SaltLeaf1 Citrus clementina cDNA clone C07004A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299917 ID=CX299917; Name=CX299917; organism=Citrus clementina; type=EST; length=719bp
CTTCTAAGCTGTGGAGTATCAACAGGCGTGGGAGCTGCTTGGAGAACAGC
AAATGTAGAGGTTGGATCAACTGTTGTTATATTTGGGCTTGGTTCAATTG
GATTAGCGGTTGCAGAGGGAGCGAGATTATGTGGTGCTACAAGGATTATA
GGCGTGGATGTGATCTCGGAAAAATTTGAAATTGGAAAAAGGTTTGGAGT
TACAGAGTTTGTGAATTCTAAAAACTGTGGGGATAAATCTGTAAGCCAGA
TAATCATTGACATGACTGATGGGGGTGCTGATTACTGCTTTGAATGTGTT
GGTTTGGCATCCTTGGTGCAAGAAGCATATGCTTGTTGCCGAAAGGGTTG
GGGGAAAACAATTGTGTTGGGAGTGGACCAGCCGGGGTCACAGTTGAGCC
TGAGCTCTTTTGAGGTCCTTCACAGTGGAAAAATTCTGATGGGATCATTG
TTTGGAGGTCTCAAAGCTAAATCTGATATTCCTATTCTTTTGAAACGTTA
CATGGATAAGGAACTAGAGCTGGATAAGTTTGTCACTCATGAGATGAAGT
TTGAAGAAATCAATAGCGCGTTTGATTTACTTATAAAAGGAAAGTGTCTC
CGTTGTGTGATATGGATGGGCGAATAAGATTTCTTGCATTATTTTCTTGT
ATGTACTTTCTCCAATATTACCTCTCATATCTAAGCAATTGACCACCATT
TGTGATGGACATGTGTATA
back to top