CX299917

Overview
NameCX299917
Unique NameCX299917
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADH7_MOUSE (Alcohol dehydrogenase class 4 mu/sigma chain OS=Mus musculus GN=Adh7 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.694e-38
Identity = 77/204 (37.75%), Postives = 123/204 (60.29%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            L+ CG STG GAA +TA V  GST V+FGLG +GL+V  G +  GA+RIIG+D+  +KF+     G TE ++ K+   K +S+++ DMT     Y FE +G    + +A + C   +G ++V+G       L+     +L +G+   G +FGG K++ D+P L+  +++K+ +LD+ +TH + F  IN  F+LL  GK +R V+
Sbjct:  171 LIGCGFSTGYGAAVKTAKVTPGSTCVVFGLGGVGLSVIMGCKAAGASRIIGIDINKDKFQKALAVGATECISPKD-STKPISEVLSDMTGNTVQYTFEVIGRLETMVDALSSCHMNYGTSVVVGAPPSAKMLTYDPM-LLFTGRTWKGCVFGGWKSRDDVPKLVTEFLEKKFDLDQLITHTLPFNNINEGFELLYSGKSIRTVL 372          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADH4_HUMAN (Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE=1 SV=4)

HSP 1 Score: 159.073 bits (401), Expect = 2.213e-38
Identity = 80/204 (39.22%), Postives = 122/204 (59.80%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            LL CG STG GAA   A V  GST  +FGLG +GL+   G +  GA+RIIG+D+ SEKF   K  G T+ +N ++   K + ++II++T GG D+  +C G +  ++ A  C   GWG    +GV      L++   E++  G+ + G+ FGG K+   IP L+  Y +K+  LD  VTH + F++I+ AFDL+ +GK +R ++
Sbjct:  177 LLGCGFSTGYGAAINNAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKFVKAKALGATDCLNPRDL-HKPIQEVIIELTKGGVDFALDCAGGSETMKAALDCTTAGWGSCTFIGVAAGSKGLTVFPEELI-IGRTINGTFFGGWKSVDSIPKLVTDYKNKKFNLDALVTHTLPFDKISEAFDLMNQGKSIRTIL 378          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADH4_STRCA (Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH4 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.774e-38
Identity = 76/204 (37.25%), Postives = 123/204 (60.29%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            L+ CG STG GAA  TA VE GST  +FGLG +GL+   G +  GA++I G+D+  +KF + K+ G T+ +N ++   K V +II +MT+GG D+  EC+G   +++ A+     GWG  +++GV      +  S  +++  G+ +  + FGG K+   +P L+  YM K+ +LD  V+H +  ++IN AFDL+  GK  R ++
Sbjct:  176 LIGCGFSTGYGAAINTAQVEPGSTCAVFGLGGVGLSAVMGCKAAGASKIFGIDINKDKFPLAKKLGATDCLNPQDI-RKPVQEIIAEMTNGGVDFAIECIGNPDVMKAAFESTTVGWGTCVIVGVAVGEQSIPFSPMQLI-MGRKIKATFFGGWKSVKSVPKLVSDYMAKKFDLDALVSHTLPLDKINDAFDLMNAGKSNRTIL 377          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADH1A_HUMAN (Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 3.774e-38
Identity = 77/204 (37.75%), Postives = 120/204 (58.82%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            L+ CG STG G+A   A V  GST  +FGLG +GL+   G +  GA RII VD+  +KF   K  G TE +N ++   K + +++ +MTDGG D+ FE +G    +  +  CC +  G ++++GV      LS++   +L +G+   G++ GG K+K  +P L+  +M K+  LD  +TH + FE+IN  FDLL  GK +R ++
Sbjct:  172 LIGCGFSTGYGSAVNVAKVTPGSTCAVFGLGGVGLSAIMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDY-KKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPDSQNLSMNPM-LLLTGRTWKGAILGGFKSKECVPKLVADFMAKKFSLDALITHVLPFEKINEGFDLLHSGKSIRTIL 373          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADH1B_PAPHA (Alcohol dehydrogenase 1B OS=Papio hamadryas GN=ADH1B PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 4.929e-38
Identity = 77/204 (37.75%), Postives = 120/204 (58.82%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            L+ CG STG G+A   A V  GS   +FGLG +GL+   G +  GA RII VD+  +KF   K  G TE +N ++   K + +++ +MTDGG D+ FE +G    +  +  CC +  G ++++GV      LS++   +L +G+   G+++GG K++  IP L+  +M K+  LD  +TH + FE+IN  FDLL  GK +R V+
Sbjct:  172 LIGCGFSTGYGSAVNVAKVTPGSVCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDY-KKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPDSQNLSINPM-LLLTGRTWKGAVYGGFKSREGIPKLVADFMAKKFSLDALITHVLPFEKINEGFDLLRSGKSIRTVL 373          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADH7_HUMAN (Alcohol dehydrogenase class 4 mu/sigma chain OS=Homo sapiens GN=ADH7 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.098e-37
Identity = 77/204 (37.75%), Postives = 126/204 (61.76%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            L+ CG STG GAA +T  V+ GST V+FGLG +GL+V  G +  GA+RIIG+D+  +KFE     G TE ++ K+   K +S+++ +MT     Y FE +G    + +A A C   +G ++V+GV      L+     +L +G+   G +FGGLK++ D+P L+  ++ K+ +LD+ +TH + F++I+  F+LL  G+ +R V+
Sbjct:  171 LIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKD-STKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYDPM-LLFTGRTWKGCVFGGLKSRDDVPKLVTEFLAKKFDLDQLITHVLPFKKISEGFELLNSGQSIRTVL 372          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADH1_PERMA (Alcohol dehydrogenase 1 OS=Peromyscus maniculatus GN=ADH1 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.098e-37
Identity = 79/204 (38.73%), Postives = 120/204 (58.82%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            L+ CG STG G+A + A V  GST  +FGLG +GL+V  G +  GA RII VD+  +KF   K  G TE +N  +   K + +++ +MTDGG D+ FE +G    +  +   C    G ++++GV      LS++   +L  G+   G++FGG K+K  +P L+  +M K+  L+  +TH + FE+IN AFDLL  GK +R V+
Sbjct:  172 LIGCGFSTGYGSAVKVAKVTPGSTCAVFGLGGVGLSVIIGCKAAGAARIIAVDINKDKFAKAKELGATECINPLDY-SKPIQEVLQEMTDGGVDFSFEVIGRLDTMTSSLLSCHASCGVSVIVGVPPNAQSLSVNPMSLL-MGRSWKGAIFGGFKSKDSVPKLVTDFMAKKFPLEPLITHVLPFEKINEAFDLLRAGKSIRTVL 373          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADH6_PERMA (Alcohol dehydrogenase 6 OS=Peromyscus maniculatus GN=ADH6 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.434e-37
Identity = 79/204 (38.73%), Postives = 120/204 (58.82%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            ++ CG +TG GAA  +A V  GST  +FGLG +GL+V  G +  GA RII VD   +KF   K  G TE ++ ++  +K + Q++ DM + GAD+ FE  G    V+ A A C K  G  +++G      QL+++S  +  SG+ L GS+ GG K K +IP L+  Y  K+  LD  +TH +  +++N A  L+  G+C+RCV+
Sbjct:  172 IIGCGFATGFGAAINSAKVSPGSTCAVFGLGGVGLSVIMGCKAAGAARIIAVDTNKDKFAKAKTVGATECIDPQDF-EKPIQQVLFDMMNDGADFTFEVTGNPETVETALASCHKDHGVCVIVGSLASWIQLNINS-HLFFSGRTLKGSVLGGWKTKEEIPKLVSDYTAKKFNLDPLITHTLTLDKVNEAIQLMKNGQCIRCVL 373          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADH4_MOUSE (Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.434e-37
Identity = 79/204 (38.73%), Postives = 121/204 (59.31%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            L+ CG S+G GAA  TA V  GST  +FGLG +GL+   G ++ GA+RII +D+  EKF   K  G T+ +N +   DK V  +I ++T GG DY  +C G A  ++ A  C   GWG   V+G      ++++ + +V+  G+ + G+ FGG K+   +P L+  Y +K+ +LD  VTH + FE IN A DL+ +GK +R ++
Sbjct:  176 LIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPREL-DKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKV--DEMTIPTVDVI-LGRSINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAIDLMKEGKSIRTIL 375          
BLAST of CX299917 vs. ExPASy Swiss-Prot
Match: ADH1_RAT (Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Adh1 PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.434e-37
Identity = 78/204 (38.24%), Postives = 121/204 (59.31%), Query Frame = 1
Query:    1 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 612
            L+ CG STG G+A + A V  GST  +FGLG +GL+V  G +  GA +II VD+  +KF   K  G T+ +N ++   K + +++ +MTDGG D+ FE +G    +  A   C    G ++++GV      LS++   +L  G+   G++FGG K+K  +P L+  +M K+  L+  +TH + FE+IN AFDLL  GK +R V+
Sbjct:  173 LIGCGFSTGYGSAVQVAKVTPGSTCAVFGLGGVGLSVVIGCKTAGAAKIIAVDINKDKFAKAKELGATDCINPQDY-TKPIQEVLQEMTDGGVDFSFEVIGRLDTMTSALLSCHSACGVSVIVGVPPSAQSLSVNPMSLL-LGRTWKGAIFGGFKSKDAVPKLVADFMAKKFPLEPLITHVLPFEKINEAFDLLRAGKSIRTVL 374          
The following BLAST results are available for this feature:
BLAST of CX299917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
ADH7_MOUSE1.694e-3837.75Alcohol dehydrogenase class 4 mu/sigma chain OS=Mu... [more]
ADH4_HUMAN2.213e-3839.22Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE... [more]
ADH4_STRCA3.774e-3837.25Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH... [more]
ADH1A_HUMAN3.774e-3837.75Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A ... [more]
ADH1B_PAPHA4.929e-3837.75Alcohol dehydrogenase 1B OS=Papio hamadryas GN=ADH... [more]
ADH7_HUMAN1.098e-3737.75Alcohol dehydrogenase class 4 mu/sigma chain OS=Ho... [more]
ADH1_PERMA1.098e-3738.73Alcohol dehydrogenase 1 OS=Peromyscus maniculatus ... [more]
ADH6_PERMA1.434e-3738.73Alcohol dehydrogenase 6 OS=Peromyscus maniculatus ... [more]
ADH4_MOUSE1.434e-3738.73Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE... [more]
ADH1_RAT1.434e-3738.24Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Ad... [more]

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Properties
Property NameValue
Genbank descriptionC07004A03SK SaltLeaf1 Citrus clementina cDNA clone C07004A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299917 ID=CX299917; Name=CX299917; organism=Citrus clementina; type=EST; length=719bp
CTTCTAAGCTGTGGAGTATCAACAGGCGTGGGAGCTGCTTGGAGAACAGC
AAATGTAGAGGTTGGATCAACTGTTGTTATATTTGGGCTTGGTTCAATTG
GATTAGCGGTTGCAGAGGGAGCGAGATTATGTGGTGCTACAAGGATTATA
GGCGTGGATGTGATCTCGGAAAAATTTGAAATTGGAAAAAGGTTTGGAGT
TACAGAGTTTGTGAATTCTAAAAACTGTGGGGATAAATCTGTAAGCCAGA
TAATCATTGACATGACTGATGGGGGTGCTGATTACTGCTTTGAATGTGTT
GGTTTGGCATCCTTGGTGCAAGAAGCATATGCTTGTTGCCGAAAGGGTTG
GGGGAAAACAATTGTGTTGGGAGTGGACCAGCCGGGGTCACAGTTGAGCC
TGAGCTCTTTTGAGGTCCTTCACAGTGGAAAAATTCTGATGGGATCATTG
TTTGGAGGTCTCAAAGCTAAATCTGATATTCCTATTCTTTTGAAACGTTA
CATGGATAAGGAACTAGAGCTGGATAAGTTTGTCACTCATGAGATGAAGT
TTGAAGAAATCAATAGCGCGTTTGATTTACTTATAAAAGGAAAGTGTCTC
CGTTGTGTGATATGGATGGGCGAATAAGATTTCTTGCATTATTTTCTTGT
ATGTACTTTCTCCAATATTACCTCTCATATCTAAGCAATTGACCACCATT
TGTGATGGACATGTGTATA
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