CX299919

Overview
NameCX299919
Unique NameCX299919
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length613
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF1_AMBAR (Profilin-1 OS=Ambrosia artemisiifolia GN=D106 PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.209e-51
Identity = 94/106 (88.68%), Postives = 101/106 (95.28%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 318
            IIGHDG VWAQS  FPQ+KPEEITGIMNDFNEPG+LAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKT+ +LIIGIYDEPMTPGQCNM+VER GDYL++QG
Sbjct:   25 IIGHDGVVWAQSATFPQVKPEEITGIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTTMSLIIGIYDEPMTPGQCNMLVERPGDYLLEQG 130          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF_LITCN (Profilin OS=Litchi chinensis PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 6.428e-51
Identity = 92/107 (85.98%), Postives = 100/107 (93.46%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 321
            IIGHDGSVWAQS NFPQ KP EI  IM DF+EPG+LAPTGL+LGGTKYMVIQGEPGAVIRGKKGPGG+T+KKT+ ALIIGIYDEPMTPGQCNM+VERLGDYL+DQGL
Sbjct:   25 IIGHDGSVWAQSANFPQFKPAEIAAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKGPGGITVKKTTQALIIGIYDEPMTPGQCNMVVERLGDYLVDQGL 131          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF2_SOLLC (Profilin-2 OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.870e-50
Identity = 95/107 (88.79%), Postives = 99/107 (92.52%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 321
            IIG DG+VWAQS NFPQ KPEEITGIMNDF  PGTLAPTGLYLGGTKYMVIQGEP AVIRGKKGPGG+TIKKT+ ALIIGIYDEPMTPGQCNMIVERLGDYLI+Q L
Sbjct:   25 IIGQDGTVWAQSANFPQFKPEEITGIMNDFAVPGTLAPTGLYLGGTKYMVIQGEPEAVIRGKKGPGGITIKKTNQALIIGIYDEPMTPGQCNMIVERLGDYLIEQSL 131          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF_CAPAN (Profilin OS=Capsicum annuum PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.166e-50
Identity = 94/107 (87.85%), Postives = 98/107 (91.59%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 321
            IIG DGSVWAQS  FPQ KPEEIT IMNDF EPGTLAPTGLYLGGTKYMVIQGE GAVIRGKKGPGG+T+KKT+ ALIIGIYDEPMTPGQCNMIVERLGDYLI+Q L
Sbjct:   25 IIGQDGSVWAQSATFPQFKPEEITAIMNDFAEPGTLAPTGLYLGGTKYMVIQGEAGAVIRGKKGPGGITVKKTNQALIIGIYDEPMTPGQCNMIVERLGDYLIEQSL 131          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF5_MAIZE (Profilin-5 OS=Zea mays GN=PRO5 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 9.282e-50
Identity = 88/106 (83.02%), Postives = 100/106 (94.34%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 318
            I+GHDGSVWAQSENFP+LKPEE+ G++ DF+EPGTLAPTGL++GGTKYMVIQGEPG VIRGKKG GG+TIKKT  +LIIGIYDEPMTPGQCNM+VERLGDYLI+QG
Sbjct:   25 IVGHDGSVWAQSENFPELKPEEVAGMIKDFDEPGTLAPTGLFVGGTKYMVIQGEPGVVIRGKKGTGGITIKKTGMSLIIGIYDEPMTPGQCNMVVERLGDYLIEQG 130          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF1_PARJU (Profilin-1 OS=Parietaria judaica GN=PRO1 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.212e-49
Identity = 90/107 (84.11%), Postives = 99/107 (92.52%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 321
            IIGHDGSVWAQS NFPQLKPEE+TGIMNDFNE G LAPTGL+LGGTKYMVIQGE GAVIRGKKG GG T+KKT  A++IGIYDEPMTPGQCN++VERLGDYL++QGL
Sbjct:   26 IIGHDGSVWAQSANFPQLKPEEVTGIMNDFNEAGFLAPTGLFLGGTKYMVIQGESGAVIRGKKGSGGATLKKTGQAIVIGIYDEPMTPGQCNLVVERLGDYLLEQGL 132          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF1_LILLO (Profilin-1 OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.583e-49
Identity = 90/107 (84.11%), Postives = 97/107 (90.65%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 321
            I+GHDGS+WAQS  FPQ KPEEITGIMNDF EPG+LAPTGLYL G KYMVIQGEPGAVIRGKKG GGVTIKKT  ALI GIY+EPMTPGQCNM+VER+GDYL+DQGL
Sbjct:   25 IVGHDGSIWAQSAGFPQFKPEEITGIMNDFAEPGSLAPTGLYLAGMKYMVIQGEPGAVIRGKKGSGGVTIKKTGQALIFGIYEEPMTPGQCNMVVERMGDYLVDQGL 131          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF4_MAIZE (Profilin-4 OS=Zea mays GN=PRO4 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.068e-49
Identity = 87/106 (82.08%), Postives = 100/106 (94.34%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 318
            I+GHDGSVWAQSE+FP+LKPEE+ GI+ DF+EPGTLAPTGL++GGTKYMVIQGEPG VIRGKKG GG+TIKKT  +LIIG+YDEPMTPGQCNM+VERLGDYLI+QG
Sbjct:   25 IVGHDGSVWAQSESFPELKPEEVAGIIKDFDEPGTLAPTGLFVGGTKYMVIQGEPGVVIRGKKGTGGITIKKTGMSLIIGVYDEPMTPGQCNMVVERLGDYLIEQG 130          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF_MUSAC (Profilin OS=Musa acuminata PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.701e-49
Identity = 91/106 (85.85%), Postives = 98/106 (92.45%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 318
            I+GHDGSVWAQS+ FPQ KPEEI  IM DF+EPG+LAPTGLYLGGTKYMVIQGEPGAVIRGKKG GGVTIKKT+ ALIIGIY+EPMTPGQCNM+VERLGDYL DQG
Sbjct:   25 IVGHDGSVWAQSDAFPQCKPEEIAAIMKDFDEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGSGGVTIKKTNLALIIGIYNEPMTPGQCNMVVERLGDYLFDQG 130          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF_CHEAL (Profilin OS=Chenopodium album PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.701e-49
Identity = 88/107 (82.24%), Postives = 101/107 (94.39%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 321
            I+GHDG+VWAQS +FPQLKPEE++ IM DFNEPG+LAPTGL+LGGTKYMVIQGEPG VIRGKKGPGGVTIKKT+ ALIIGIY EPMTPGQCNM+VER+GDYL++QG+
Sbjct:   25 ILGHDGTVWAQSPSFPQLKPEEVSAIMKDFNEPGSLAPTGLHLGGTKYMVIQGEPGDVIRGKKGPGGVTIKKTNQALIIGIYGEPMTPGQCNMVVERIGDYLVEQGM 131          
The following BLAST results are available for this feature:
BLAST of CX299919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
PROF1_AMBAR2.209e-5188.68Profilin-1 OS=Ambrosia artemisiifolia GN=D106 PE=1... [more]
PROF_LITCN6.428e-5185.98Profilin OS=Litchi chinensis PE=1 SV=1[more]
PROF2_SOLLC1.870e-5088.79Profilin-2 OS=Solanum lycopersicum PE=1 SV=1[more]
PROF_CAPAN4.166e-5087.85Profilin OS=Capsicum annuum PE=1 SV=1[more]
PROF5_MAIZE9.282e-5083.02Profilin-5 OS=Zea mays GN=PRO5 PE=1 SV=1[more]
PROF1_PARJU1.212e-4984.11Profilin-1 OS=Parietaria judaica GN=PRO1 PE=1 SV=1[more]
PROF1_LILLO1.583e-4984.11Profilin-1 OS=Lilium longiflorum PE=2 SV=1[more]
PROF4_MAIZE2.068e-4982.08Profilin-4 OS=Zea mays GN=PRO4 PE=1 SV=1[more]
PROF_MUSAC2.701e-4985.85Profilin OS=Musa acuminata PE=1 SV=1[more]
PROF_CHEAL2.701e-4982.24Profilin OS=Chenopodium album PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC07004A06SK SaltLeaf1 Citrus clementina cDNA clone C07004A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299919 ID=CX299919; Name=CX299919; organism=Citrus clementina; type=EST; length=613bp
ATCATCGGCCACGACGGCAGCGTTTGGGCCCAGAGTGAAAACTTCCCTCA
GTTAAAACCTGAGGAAATAACTGGTATCATGAATGACTTTAATGAACCTG
GAACACTAGCACCAACTGGACTGTATCTTGGTGGCACAAAATATATGGTG
ATCCAGGGTGAGCCAGGTGCTGTCATCCGAGGGAAGAAGGGCCCTGGTGG
TGTTACCATCAAGAAGACCAGTGCGGCCTTAATCATTGGAATCTATGATG
AGCCGATGACCCCTGGGCAGTGCAACATGATTGTTGAAAGGCTTGGTGAT
TATCTCATTGATCAGGGTCTTTAGGTGGTTTGCATGTCCGCTAATTTGTT
TCATTTCTTGGCTTCCCTAAAAAGCTCGCACTGTTGAACTTCGGTGTAAT
AATATTACAGTATTCAAAGTTATGGGAACTGTGTGTGGAAAGGAAAGGTT
TGGTGCATGTGGAAGTTCTTGATATCATCTATTTGTAGTATTGTTATGGT
TGTCAAGGTACTTTACCAATCACTATTACAGTGGATCCTAATGGATGTGT
CAATTTGAGTTGTAAAACTTGTGAGATTCTTGTTTCTCAATGTATTTTGC
GTTGGTTGTTGAA
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