CX299919

Overview
NameCX299919
Unique NameCX299919
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length613
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF_PRUDU (Profilin OS=Prunus dulcis PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.650e-46
Identity = 85/107 (79.44%), Postives = 96/107 (89.72%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 321
            I+G DGSVW+QS  FP  KPEEI  I+ DF++PGTLAPTGL+LGGTKYMVIQGE GAVIRGKKG GG+T+KKT+ ALIIGIYDEP+TPGQCNMIVERLGDYLI+QGL
Sbjct:   25 ILGQDGSVWSQSATFPAFKPEEIAAILKDFDQPGTLAPTGLFLGGTKYMVIQGEAGAVIRGKKGSGGITVKKTNQALIIGIYDEPLTPGQCNMIVERLGDYLIEQGL 131          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF3_PHLPR (Profilin-3 OS=Phleum pratense GN=PRO3 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.650e-46
Identity = 82/107 (76.64%), Postives = 95/107 (88.79%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 321
            I GHDG+VWAQS +FPQ KPEEITGIM D +EPG LAPTG+++   KYMVIQGEPGAVIRGKKG GG+TIKKT  AL++GIYDEPMTPGQCNM+VERLGDYL++QG+
Sbjct:   25 IFGHDGTVWAQSADFPQFKPEEITGIMKDLDEPGHLAPTGMFVAAAKYMVIQGEPGAVIRGKKGAGGITIKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQGM 131          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF1_SOLLC (Profilin-1 OS=Solanum lycopersicum GN=PRO1 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.650e-46
Identity = 83/106 (78.30%), Postives = 96/106 (90.57%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 318
            I+G DGSVWAQS NFP+ K EEIT IM DF+EPG LAPTGL+L GTKYMVIQGEPGAVIRGKKGPGG+TIKKT+ ALI G+Y+EP+TPGQCNM+VE++GDYL+DQG
Sbjct:   27 ILGFDGSVWAQSPNFPKFKAEEITNIMKDFDEPGHLAPTGLFLAGTKYMVIQGEPGAVIRGKKGPGGITIKKTAQALIFGVYEEPVTPGQCNMVVEKIGDYLVDQG 132          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF_CYNDA (Profilin OS=Cynodon dactylon GN=PRO1 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.767e-46
Identity = 84/107 (78.50%), Postives = 95/107 (88.79%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 321
            IIGHDG+VWAQS  FP  KPEE+  IM DF+EPG LAPTGL+LG TKYMVIQGEPGAVIRGKKG GGVT+KKT  AL+IGIYDEPMTPGQCNM++E+LGDYLI+QG+
Sbjct:   25 IIGHDGTVWAQSAAFPAFKPEEMANIMKDFDEPGFLAPTGLFLGPTKYMVIQGEPGAVIRGKKGSGGVTVKKTGQALVIGIYDEPMTPGQCNMVIEKLGDYLIEQGM 131          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF5_ARATH (Profilin-5 OS=Arabidopsis thaliana GN=PRO5 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 6.226e-46
Identity = 85/107 (79.44%), Postives = 94/107 (87.85%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 321
            I+G DGSVWAQS NFPQ+KPEEI GI +DF  PGTLAPTGL+LGG KYMVIQGEP AVIRGKKG GGVTIKKT+ AL+ GIYDEPMTPGQCNM+VE LG+YLI+ GL
Sbjct:   25 ILGQDGSVWAQSNNFPQVKPEEIQGIKDDFTTPGTLAPTGLFLGGNKYMVIQGEPNAVIRGKKGAGGVTIKKTTLALVFGIYDEPMTPGQCNMVVENLGEYLIESGL 131          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF3_LILLO (Profilin-3 OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 6.226e-46
Identity = 84/106 (79.25%), Postives = 95/106 (89.62%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 318
            IIGH+G +WAQS++FPQ+KPE+   IM DF EPG+LAPTGL+LG  KYMVIQGEPGAVIRGKKG GGVTIKKT+ ALI+GIYDEPMTPGQCNM+VERLGDYL DQG
Sbjct:   25 IIGHEGGIWAQSDSFPQVKPEQTAAIMRDFAEPGSLAPTGLFLGDGKYMVIQGEPGAVIRGKKGSGGVTIKKTNMALIVGIYDEPMTPGQCNMVVERLGDYLYDQG 130          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF2_TOBAC (Profilin-2 OS=Nicotiana tabacum GN=PRO2 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 6.226e-46
Identity = 83/106 (78.30%), Postives = 96/106 (90.57%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 318
            I+G+DGSVWAQS  FP+ KPEEIT IM DF+EPG LAPTGL+LGG KYMVIQGEPGAVIRGKKG GG+TIKKT+ ALI GIY+EP+TPGQCNM+VE++GDYL+DQG
Sbjct:   28 ILGNDGSVWAQSTTFPKFKPEEITNIMKDFDEPGHLAPTGLFLGGAKYMVIQGEPGAVIRGKKGSGGITIKKTNQALIFGIYEEPVTPGQCNMVVEKIGDYLVDQG 133          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF1_TOBAC (Profilin-1 OS=Nicotiana tabacum GN=PRO1 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 6.226e-46
Identity = 83/106 (78.30%), Postives = 95/106 (89.62%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 318
            I+GHDGSVWAQS  FP+ KPEEIT IM DF+EPG LAPTGL+LGG KYMVIQGEPGAVIRGKKG GG+TIKKT+ ALI GIY+EP+TPGQCNM+VE++ DYL+DQG
Sbjct:   28 ILGHDGSVWAQSSTFPKFKPEEITNIMKDFDEPGHLAPTGLFLGGAKYMVIQGEPGAVIRGKKGSGGITIKKTNQALIFGIYEEPVTPGQCNMVVEKIRDYLVDQG 133          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF3_TOBAC (Profilin-3 OS=Nicotiana tabacum GN=PRO3 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 8.131e-46
Identity = 82/106 (77.36%), Postives = 96/106 (90.57%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 318
            I+GHDGSVWAQS +FP+ KPEEIT IM DF+EPG LAPTGL+L G KYMVIQGEPGAVIRGKKG GG+TIKKT+ ALI G+Y+EP+TPGQCNM+VE++GDYL+DQG
Sbjct:   27 ILGHDGSVWAQSPHFPKFKPEEITNIMKDFDEPGFLAPTGLFLAGIKYMVIQGEPGAVIRGKKGSGGITIKKTNQALIFGLYEEPVTPGQCNMVVEKIGDYLVDQG 132          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF1_MAIZE (Profilin-1 OS=Zea mays GN=PRO1 PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 8.131e-46
Identity = 82/107 (76.64%), Postives = 95/107 (88.79%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 321
            I+GHDG+ WAQS  FP+ KPEE+  IM DF+EPG LAPTGL LGGTKYMVIQGEPGAVIRGKKG GG+T+KKT  +LIIGIYDEPMTPGQCN++VERLGDYL++QG+
Sbjct:   25 IVGHDGATWAQSTAFPEFKPEEMAAIMKDFDEPGHLAPTGLILGGTKYMVIQGEPGAVIRGKKGSGGITVKKTGQSLIIGIYDEPMTPGQCNLVVERLGDYLLEQGM 131          
The following BLAST results are available for this feature:
BLAST of CX299919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
PROF_PRUDU3.650e-4679.44Profilin OS=Prunus dulcis PE=1 SV=1[more]
PROF3_PHLPR3.650e-4676.64Profilin-3 OS=Phleum pratense GN=PRO3 PE=1 SV=1[more]
PROF1_SOLLC3.650e-4678.30Profilin-1 OS=Solanum lycopersicum GN=PRO1 PE=2 SV... [more]
PROF_CYNDA4.767e-4678.50Profilin OS=Cynodon dactylon GN=PRO1 PE=1 SV=1[more]
PROF5_ARATH6.226e-4679.44Profilin-5 OS=Arabidopsis thaliana GN=PRO5 PE=2 SV... [more]
PROF3_LILLO6.226e-4679.25Profilin-3 OS=Lilium longiflorum PE=2 SV=1[more]
PROF2_TOBAC6.226e-4678.30Profilin-2 OS=Nicotiana tabacum GN=PRO2 PE=2 SV=1[more]
PROF1_TOBAC6.226e-4678.30Profilin-1 OS=Nicotiana tabacum GN=PRO1 PE=2 SV=1[more]
PROF3_TOBAC8.131e-4677.36Profilin-3 OS=Nicotiana tabacum GN=PRO3 PE=2 SV=1[more]
PROF1_MAIZE8.131e-4676.64Profilin-1 OS=Zea mays GN=PRO1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC07004A06SK SaltLeaf1 Citrus clementina cDNA clone C07004A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299919 ID=CX299919; Name=CX299919; organism=Citrus clementina; type=EST; length=613bp
ATCATCGGCCACGACGGCAGCGTTTGGGCCCAGAGTGAAAACTTCCCTCA
GTTAAAACCTGAGGAAATAACTGGTATCATGAATGACTTTAATGAACCTG
GAACACTAGCACCAACTGGACTGTATCTTGGTGGCACAAAATATATGGTG
ATCCAGGGTGAGCCAGGTGCTGTCATCCGAGGGAAGAAGGGCCCTGGTGG
TGTTACCATCAAGAAGACCAGTGCGGCCTTAATCATTGGAATCTATGATG
AGCCGATGACCCCTGGGCAGTGCAACATGATTGTTGAAAGGCTTGGTGAT
TATCTCATTGATCAGGGTCTTTAGGTGGTTTGCATGTCCGCTAATTTGTT
TCATTTCTTGGCTTCCCTAAAAAGCTCGCACTGTTGAACTTCGGTGTAAT
AATATTACAGTATTCAAAGTTATGGGAACTGTGTGTGGAAAGGAAAGGTT
TGGTGCATGTGGAAGTTCTTGATATCATCTATTTGTAGTATTGTTATGGT
TGTCAAGGTACTTTACCAATCACTATTACAGTGGATCCTAATGGATGTGT
CAATTTGAGTTGTAAAACTTGTGAGATTCTTGTTTCTCAATGTATTTTGC
GTTGGTTGTTGAA
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