CX299919

Overview
NameCX299919
Unique NameCX299919
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length613
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF_HELAN (Profilin OS=Helianthus annuus PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.454e-42
Identity = 75/107 (70.09%), Postives = 93/107 (86.92%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 321
            I+G DG+VWAQS  FPQ KPEE+ GI+ +F+E GTLAPTG+++ G KYMV+QGEPGAVIRGKKG GG+ IKKT  A+I+GIYDEP+ PGQCNM+VERLGDYL++QG+
Sbjct:   27 ILGLDGTVWAQSAKFPQFKPEEMKGIIKEFDEAGTLAPTGMFIAGAKYMVLQGEPGAVIRGKKGAGGICIKKTGQAMIMGIYDEPVAPGQCNMVVERLGDYLLEQGM 133          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF1_ARTVU (Profilin-1 OS=Artemisia vulgaris PE=1 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 7.876e-41
Identity = 75/107 (70.09%), Postives = 89/107 (83.18%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 321
            I G DG+VWA+S +FP+ KP EI  I+ +FNE G LAPTGL+LGG KYMVIQGE GAVIRGKKG GG+ IKKT  A++ GIYDEP+ PGQCNM+VERLGDYL+DQG+
Sbjct:   27 IFGTDGTVWAKSASFPEFKPNEIDAIIKEFNEAGQLAPTGLFLGGAKYMVIQGEAGAVIRGKKGAGGICIKKTGQAMVFGIYDEPVAPGQCNMVVERLGDYLLDQGM 133          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF_BRABE (Profilin OS=Branchiostoma belcheri PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.173e-18
Identity = 45/107 (42.06%), Postives = 68/107 (63.55%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 321
            I G DGS+WA+S    +L  +E+  +   F++   LA  G+ +GGTKY+ + G+   +IRGKK   GV I KT  A+++ +Y EP+ P QC ++VE+LGD+LI   L
Sbjct:   22 ICGLDGSIWAKSNGL-ELSQDEVATLARSFSKDEVLAANGIRIGGTKYIYLSGDD-KLIRGKKDRQGVHIVKTKTAMVMALYAEPILPEQCAVVVEKLGDWLIQNDL 126          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF_APIME (Profilin OS=Apis mellifera PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.560e-17
Identity = 43/106 (40.57%), Postives = 67/106 (63.21%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 318
            I GHDG++WA+SE F ++  EE+T ++  F E   L  +G+ L G +Y+ + G    VIR K G  GV   KT+ A+++ +Y++P+ P Q   +VE+LGDYL+  G
Sbjct:   22 IAGHDGNLWAKSEGF-EVSKEELTKLVQGFEEQDILTSSGVTLAGNRYIYLSGTD-RVIRAKLGKVGVHCMKTTQAVVVSLYEDPIQPQQAASVVEKLGDYLVSCG 125          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF1_DICDI (Profilin-1 OS=Dictyostelium discoideum GN=proA PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.560e-17
Identity = 46/103 (44.66%), Postives = 62/103 (60.19%), Query Frame = 1
Query:   10 HDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 318
            +DG VWA+S      KPE   GI   F  P  +   G  +GG KYM I+G+P ++  GKKG  G  + +T  A+I+GIYD+ + PG   +IVE+LGDYL D G
Sbjct:   25 NDGGVWAKSSGINITKPEG-DGIAALFKNPAEVFAKGALIGGVKYMGIKGDPQSIY-GKKGATGCVLVRTGQAIIVGIYDDKVQPGSAALIVEKLGDYLRDNG 125          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF_DROME (Profilin OS=Drosophila melanogaster GN=chic PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.036e-16
Identity = 44/106 (41.51%), Postives = 66/106 (62.26%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 318
            I GHDG++WAQS  F   K EE++ +++ F++   L   G+ L G +Y+ + G    V+R K G  GV   KT+ A+I+ IY++P+ P Q   +VE+LGDYLI  G
Sbjct:   22 IAGHDGNIWAQSSGFEVTK-EELSKLISGFDQQDGLTSNGVTLAGQRYIYLSGTD-RVVRAKLGRSGVHCMKTTQAVIVSIYEDPVQPQQAASVVEKLGDYLITCG 125          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF2_ACACA (Profilin-2 OS=Acanthamoeba castellanii PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.036e-16
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 318
            IIGHDG+ WA S  F  + P     + N F +   +   G  L GT+Y+ I+ +  +V  GKKG  GV   KTS A++IG+Y+E + PG    +VE+L DYLI QG
Sbjct:   22 IIGHDGNTWATSAGFA-VSPANGAALANAFKDATAIRSNGFELAGTRYVTIRADDRSVY-GKKGSAGVITVKTSKAILIGVYNEKIQPGTAANVVEKLADYLIGQG 125          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF1_PHYPO (Profilin-A OS=Physarum polycephalum GN=PROA PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.353e-16
Identity = 45/106 (42.45%), Postives = 68/106 (64.15%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 318
            IIGHDG+VWA S+N   LK  E   I+N F +  ++   G+++ G KY+ I+ +  ++  GKKG GGV + KT  +++IG Y+E + PGQ   +VE+L DYL + G
Sbjct:   22 IIGHDGNVWA-SKNL-SLKAGEGAKIVNGFKDSASVLSGGIFVDGQKYLTIKADDKSIY-GKKGAGGVVLVKTGQSVLIGHYNETIQPGQATTVVEKLADYLRENG 124          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF_BOMMO (Profilin OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.140e-16
Identity = 43/106 (40.57%), Postives = 64/106 (60.38%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 318
            I GHDG+VWA+SE F ++  +E+  I+  F     L   G+ + GT+Y+ + G    +IR K G  GV   KT  A++I +Y+EP+ P Q   +VE+LG+YLI  G
Sbjct:   22 IAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLLTSGGVTIAGTRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 125          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PRO1B_ACACA (Profilin-1B OS=Acanthamoeba castellanii PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 8.207e-14
Identity = 40/106 (37.74%), Postives = 60/106 (56.60%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 318
            I+G DG+ WA S  F  + P + T +   FN    +   G  L G  Y+ ++ +  ++  GKKG  GV   KTS A+++G+Y+E + PG    +VE+L DYLI QG
Sbjct:   22 ILGLDGNTWATSAGFA-VTPAQGTTLAGAFNNADAIRAGGFDLAGVHYVTLRADDRSIY-GKKGAAGVITVKTSKAILVGVYNEKIQPGTAANVVEKLADYLIGQG 125          
The following BLAST results are available for this feature:
BLAST of CX299919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
PROF_HELAN5.454e-4270.09Profilin OS=Helianthus annuus PE=1 SV=1[more]
PROF1_ARTVU7.876e-4170.09Profilin-1 OS=Artemisia vulgaris PE=1 SV=3[more]
PROF_BRABE7.173e-1842.06Profilin OS=Branchiostoma belcheri PE=2 SV=1[more]
PROF_APIME3.560e-1740.57Profilin OS=Apis mellifera PE=2 SV=1[more]
PROF1_DICDI3.560e-1744.66Profilin-1 OS=Dictyostelium discoideum GN=proA PE=... [more]
PROF_DROME1.036e-1641.51Profilin OS=Drosophila melanogaster GN=chic PE=1 S... [more]
PROF2_ACACA1.036e-1642.45Profilin-2 OS=Acanthamoeba castellanii PE=1 SV=3[more]
PROF1_PHYPO1.353e-1642.45Profilin-A OS=Physarum polycephalum GN=PROA PE=3 S... [more]
PROF_BOMMO5.140e-1640.57Profilin OS=Bombyx mori PE=2 SV=1[more]
PRO1B_ACACA8.207e-1437.74Profilin-1B OS=Acanthamoeba castellanii PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC07004A06SK SaltLeaf1 Citrus clementina cDNA clone C07004A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299919 ID=CX299919; Name=CX299919; organism=Citrus clementina; type=EST; length=613bp
ATCATCGGCCACGACGGCAGCGTTTGGGCCCAGAGTGAAAACTTCCCTCA
GTTAAAACCTGAGGAAATAACTGGTATCATGAATGACTTTAATGAACCTG
GAACACTAGCACCAACTGGACTGTATCTTGGTGGCACAAAATATATGGTG
ATCCAGGGTGAGCCAGGTGCTGTCATCCGAGGGAAGAAGGGCCCTGGTGG
TGTTACCATCAAGAAGACCAGTGCGGCCTTAATCATTGGAATCTATGATG
AGCCGATGACCCCTGGGCAGTGCAACATGATTGTTGAAAGGCTTGGTGAT
TATCTCATTGATCAGGGTCTTTAGGTGGTTTGCATGTCCGCTAATTTGTT
TCATTTCTTGGCTTCCCTAAAAAGCTCGCACTGTTGAACTTCGGTGTAAT
AATATTACAGTATTCAAAGTTATGGGAACTGTGTGTGGAAAGGAAAGGTT
TGGTGCATGTGGAAGTTCTTGATATCATCTATTTGTAGTATTGTTATGGT
TGTCAAGGTACTTTACCAATCACTATTACAGTGGATCCTAATGGATGTGT
CAATTTGAGTTGTAAAACTTGTGAGATTCTTGTTTCTCAATGTATTTTGC
GTTGGTTGTTGAA
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