CX299919

Overview
NameCX299919
Unique NameCX299919
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length613
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF2_DICDI (Profilin-2 OS=Dictyostelium discoideum GN=proB PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.828e-13
Identity = 40/100 (40.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:   13 DGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLID 312
            DGSVWA S  F   + + IT +   F + G    TG+++ G KYM I+ +  +   GK G GGV   KT   +I+ +YD+ + PG    I E+L DYLID
Sbjct:   26 DGSVWAHSAGFNVAEGKAITAL---FQKDGAAFATGIHVAGKKYMAIKSDTRSAY-GKLGAGGVVCVKTLTCIIVAVYDDKLQPGAAANIAEKLADYLID 121          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PRO1A_ACACA (Profilin-1A OS=Acanthamoeba castellanii PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.073e-13
Identity = 38/106 (35.85%), Postives = 61/106 (57.55%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 318
            I+G DG+ WA S  F  + P +   + + FN    +  +G  L G  Y+ ++ +  ++  GKKG  GV   KTS ++++G+Y+E + PG    +VE+L DYLI QG
Sbjct:   22 ILGLDGNTWATSAGFA-VTPAQGQTLASAFNNADPIRASGFDLAGVHYVTLRADDRSIY-GKKGSAGVITVKTSKSILVGVYNEKIQPGTAANVVEKLADYLIGQG 125          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF2_PHYPO (Profilin-P OS=Physarum polycephalum GN=PROP PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.021e-12
Identity = 43/106 (40.57%), Postives = 60/106 (56.60%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 318
            IIG DG+ WA S+N   LK  E   I   F  P  +  +G+ + G KYM I+G+  ++  GKKG  GV    T   ++IG Y+E   PG   ++VE+L DYLI+ G
Sbjct:   22 IIGLDGNSWA-SKNLT-LKAGEGQAIAALFKTPANVFASGITINGIKYMGIKGDSRSIY-GKKGATGVATVITGQCILIGYYNEKQQPGNAALVVEKLADYLIENG 124          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF3_CAEEL (Profilin-3 OS=Caenorhabditis elegans GN=pfn-3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.919e-11
Identity = 39/101 (38.61%), Postives = 55/101 (54.46%), Query Frame = 1
Query:    1 IIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDY 303
            I+G DG+VWA+S+NF  +  EE       F     L  TGL L G K++V+  +   +I GK+G  G  I KT  A+II IY++ + P  C+     L DY
Sbjct:   22 ILGFDGAVWAKSDNF-NISVEEAVAAGKAFTSLDALLGTGLRLEGQKFLVLNADNDRII-GKQGGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTGALADY 120          
BLAST of CX299919 vs. ExPASy Swiss-Prot
Match: PROF_SCHPO (Profilin OS=Schizosaccharomyces pombe GN=cdc3 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.979e-11
Identity = 38/100 (38.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query:   19 SVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 318
            SVWA S  F  L P+EI G+   F +P ++  TG+ L G KY+ I+ E G  I GK    G+    T   +++  Y E   PG+   I E L DYL+  G
Sbjct:   29 SVWAASAGF-NLSPQEIQGLAAGFQDPPSMFGTGIILAGQKYITIRAE-GRSIYGKLQKEGIICVATKLCILVSHYPETTLPGEAAKITEALADYLVGVG 126          
The following BLAST results are available for this feature:
BLAST of CX299919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
PROF2_DICDI1.828e-1340.00Profilin-2 OS=Dictyostelium discoideum GN=proB PE=... [more]
PRO1A_ACACA4.073e-1335.85Profilin-1A OS=Acanthamoeba castellanii PE=1 SV=2[more]
PROF2_PHYPO2.021e-1240.57Profilin-P OS=Physarum polycephalum GN=PROP PE=1 S... [more]
PROF3_CAEEL2.919e-1138.61Profilin-3 OS=Caenorhabditis elegans GN=pfn-3 PE=2... [more]
PROF_SCHPO4.979e-1138.00Profilin OS=Schizosaccharomyces pombe GN=cdc3 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC07004A06SK SaltLeaf1 Citrus clementina cDNA clone C07004A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299919 ID=CX299919; Name=CX299919; organism=Citrus clementina; type=EST; length=613bp
ATCATCGGCCACGACGGCAGCGTTTGGGCCCAGAGTGAAAACTTCCCTCA
GTTAAAACCTGAGGAAATAACTGGTATCATGAATGACTTTAATGAACCTG
GAACACTAGCACCAACTGGACTGTATCTTGGTGGCACAAAATATATGGTG
ATCCAGGGTGAGCCAGGTGCTGTCATCCGAGGGAAGAAGGGCCCTGGTGG
TGTTACCATCAAGAAGACCAGTGCGGCCTTAATCATTGGAATCTATGATG
AGCCGATGACCCCTGGGCAGTGCAACATGATTGTTGAAAGGCTTGGTGAT
TATCTCATTGATCAGGGTCTTTAGGTGGTTTGCATGTCCGCTAATTTGTT
TCATTTCTTGGCTTCCCTAAAAAGCTCGCACTGTTGAACTTCGGTGTAAT
AATATTACAGTATTCAAAGTTATGGGAACTGTGTGTGGAAAGGAAAGGTT
TGGTGCATGTGGAAGTTCTTGATATCATCTATTTGTAGTATTGTTATGGT
TGTCAAGGTACTTTACCAATCACTATTACAGTGGATCCTAATGGATGTGT
CAATTTGAGTTGTAAAACTTGTGAGATTCTTGTTTCTCAATGTATTTTGC
GTTGGTTGTTGAA
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