CX299921
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL8_MAMBR (60S ribosomal protein L8 OS=Mamestra brassicae GN=RpL8 PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 1.212e-21 Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 1 Query: 4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 AYHK++VKRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R G+KVGLI Sbjct: 185 AYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLI 238
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL8_DROME (60S ribosomal protein L8 OS=Drosophila melanogaster GN=RpL8 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 2.700e-21 Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 1 Query: 4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 AYHK++VKRN WPKVRGVAMNPVEHPHGGGNHQHIG ASTV+R G+KVGLI Sbjct: 185 AYHKYKVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLI 238
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_YEAST (60S ribosomal protein L2 OS=Saccharomyces cerevisiae GN=RPL2A PE=1 SV=3) HSP 1 Score: 95.9005 bits (237), Expect = 6.651e-20 Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 1 Query: 4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 A+HK+R+KRN WPK RGVAMNPV+HPHGGGNHQHIG AST+ R A GQK GLI Sbjct: 185 AFHKYRLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLI 238
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_ASHGO (60S ribosomal protein L2 OS=Ashbya gossypii GN=RPL2 PE=4 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 6.651e-20 Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 1 Query: 4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 A+HK++VKRN WPK RGVAMNPV+HPHGGGNHQHIG AST+ R A GQK GLI Sbjct: 185 AFHKYKVKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLI 238
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_CANGA (60S ribosomal protein L2 OS=Candida glabrata GN=RPL2 PE=4 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 1.482e-19 Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 1 Query: 4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 A+HK+++KRN WPK RGVAMNPV+HPHGGGNHQHIG AST+ R A GQK GLI Sbjct: 185 AFHKYKLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLI 238
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_STAMF (50S ribosomal protein L2P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 2.140e-18 Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 1 Query: 1 NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 NAYHK++VK WPKVRGVAMN V HPHGGG+HQH+G STV R+ PPG+KVG I Sbjct: 175 NAYHKWKVKAKKWPKVRGVAMNAVSHPHGGGSHQHVGKPSTVARETPPGRKVGHI 229
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_IGNH4 (50S ribosomal protein L2P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl2p PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 4.461e-16 Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 1 Query: 1 NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 NAY+K++ K WP VRGVAMN V HPHGGGNHQ G+ +TV R+APPGQKVG I Sbjct: 178 NAYYKWKAKAKKWPVVRGVAMNAVNHPHGGGNHQSPGYPTTVARNAPPGQKVGHI 232
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_AERPE (50S ribosomal protein L2P OS=Aeropyrum pernix GN=rpl2p PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 5.827e-16 Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 1 Query: 4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 AYHK++VK WP+VRGVAMN V+HP GGG HQH G STV R APPG+KVG I Sbjct: 175 AYHKWKVKARKWPRVRGVAMNAVDHPFGGGRHQHKGRPSTVARTAPPGRKVGHI 228
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_DESK1 (50S ribosomal protein L2P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl2p PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 1.298e-15 Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 1 Query: 4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 AY+K+ K WPKVRGVAMN HPHGGG+HQH+G STV R+ PPG+KVG I Sbjct: 176 AYYKWSAKSRVWPKVRGVAMNAAFHPHGGGSHQHVGRPSTVARNTPPGRKVGHI 229
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_ARCFU (50S ribosomal protein L2P OS=Archaeoglobus fulgidus GN=rpl2p PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 6.442e-15 Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 1 Query: 7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 YHK + K WP+VRGVAMN V+HP GGG HQH+G TV R+APPG+KVG I Sbjct: 176 YHKMKSKAAKWPRVRGVAMNAVDHPFGGGKHQHVGKPKTVSRNAPPGRKVGSI 228 The following BLAST results are available for this feature:
BLAST of CX299921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >CX299921 ID=CX299921; Name=CX299921; organism=Citrus clementina; type=EST; length=401bpback to top |