CX299921

Overview
NameCX299921
Unique NameCX299921
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length401
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL8_MAMBR (60S ribosomal protein L8 OS=Mamestra brassicae GN=RpL8 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.212e-21
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 1
Query:    4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            AYHK++VKRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R    G+KVGLI
Sbjct:  185 AYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLI 238          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL8_DROME (60S ribosomal protein L8 OS=Drosophila melanogaster GN=RpL8 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.700e-21
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 1
Query:    4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            AYHK++VKRN WPKVRGVAMNPVEHPHGGGNHQHIG ASTV+R    G+KVGLI
Sbjct:  185 AYHKYKVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLI 238          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_YEAST (60S ribosomal protein L2 OS=Saccharomyces cerevisiae GN=RPL2A PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 6.651e-20
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 1
Query:    4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            A+HK+R+KRN WPK RGVAMNPV+HPHGGGNHQHIG AST+ R A  GQK GLI
Sbjct:  185 AFHKYRLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLI 238          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_ASHGO (60S ribosomal protein L2 OS=Ashbya gossypii GN=RPL2 PE=4 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.651e-20
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 1
Query:    4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            A+HK++VKRN WPK RGVAMNPV+HPHGGGNHQHIG AST+ R A  GQK GLI
Sbjct:  185 AFHKYKVKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLI 238          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_CANGA (60S ribosomal protein L2 OS=Candida glabrata GN=RPL2 PE=4 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.482e-19
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 1
Query:    4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            A+HK+++KRN WPK RGVAMNPV+HPHGGGNHQHIG AST+ R A  GQK GLI
Sbjct:  185 AFHKYKLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLI 238          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_STAMF (50S ribosomal protein L2P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.140e-18
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 1
Query:    1 NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            NAYHK++VK   WPKVRGVAMN V HPHGGG+HQH+G  STV R+ PPG+KVG I
Sbjct:  175 NAYHKWKVKAKKWPKVRGVAMNAVSHPHGGGSHQHVGKPSTVARETPPGRKVGHI 229          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_IGNH4 (50S ribosomal protein L2P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.461e-16
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 1
Query:    1 NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            NAY+K++ K   WP VRGVAMN V HPHGGGNHQ  G+ +TV R+APPGQKVG I
Sbjct:  178 NAYYKWKAKAKKWPVVRGVAMNAVNHPHGGGNHQSPGYPTTVARNAPPGQKVGHI 232          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_AERPE (50S ribosomal protein L2P OS=Aeropyrum pernix GN=rpl2p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.827e-16
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 1
Query:    4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            AYHK++VK   WP+VRGVAMN V+HP GGG HQH G  STV R APPG+KVG I
Sbjct:  175 AYHKWKVKARKWPRVRGVAMNAVDHPFGGGRHQHKGRPSTVARTAPPGRKVGHI 228          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_DESK1 (50S ribosomal protein L2P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.298e-15
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            AY+K+  K   WPKVRGVAMN   HPHGGG+HQH+G  STV R+ PPG+KVG I
Sbjct:  176 AYYKWSAKSRVWPKVRGVAMNAAFHPHGGGSHQHVGRPSTVARNTPPGRKVGHI 229          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_ARCFU (50S ribosomal protein L2P OS=Archaeoglobus fulgidus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.442e-15
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 1
Query:    7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            YHK + K   WP+VRGVAMN V+HP GGG HQH+G   TV R+APPG+KVG I
Sbjct:  176 YHKMKSKAAKWPRVRGVAMNAVDHPFGGGKHQHVGKPKTVSRNAPPGRKVGSI 228          
The following BLAST results are available for this feature:
BLAST of CX299921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
RL8_MAMBR1.212e-2181.4860S ribosomal protein L8 OS=Mamestra brassicae GN=... [more]
RL8_DROME2.700e-2181.4860S ribosomal protein L8 OS=Drosophila melanogaste... [more]
RL2_YEAST6.651e-2075.9360S ribosomal protein L2 OS=Saccharomyces cerevisi... [more]
RL2_ASHGO6.651e-2075.9360S ribosomal protein L2 OS=Ashbya gossypii GN=RPL... [more]
RL2_CANGA1.482e-1974.0760S ribosomal protein L2 OS=Candida glabrata GN=RP... [more]
RL2_STAMF2.140e-1870.9150S ribosomal protein L2P OS=Staphylothermus marin... [more]
RL2_IGNH44.461e-1667.2750S ribosomal protein L2P OS=Ignicoccus hospitalis... [more]
RL2_AERPE5.827e-1668.5250S ribosomal protein L2P OS=Aeropyrum pernix GN=r... [more]
RL2_DESK11.298e-1564.8150S ribosomal protein L2P OS=Desulfurococcus kamch... [more]
RL2_ARCFU6.442e-1564.1550S ribosomal protein L2P OS=Archaeoglobus fulgidu... [more]

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Properties
Property NameValue
Genbank descriptionC07004A08SK SaltLeaf1 Citrus clementina cDNA clone C07004A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299921 ID=CX299921; Name=CX299921; organism=Citrus clementina; type=EST; length=401bp
AATGCTTATCACAAGTTCAGGGTGAAGAGGAACTGCTGGCCCAAGGTCCG
TGGTGTTGCCATGAACCCTGTTGAGCATCCCCATGGTGGTGGTAACCACC
AGCACATTGGGCATGCAAGTACGGTTCGCCGTGATGCACCCCCTGGCCAA
AAGGTTGGTCTTATTGCTGCTAGGAGGACTGGTCGTCTTAGAGGACAAGC
AGCTGCCACTGCTGCAAAGGCTGACAAGGCTTAGAGTTTCGCTTGAGCTC
ATTTTAATTTTGTTTTGTGCTGTTGAACATCTTCATATGGTTGTTATCTG
TTAGCATTAGATTTTGGTTTGCAATTTTGGAAGGTTACTAACTTCTTGTG
ATTAGTACATTGAAAGTGAGAGTATTTTGTTTTAAAAAAAAAAAAAAAAA
A
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