CX299921

Overview
NameCX299921
Unique NameCX299921
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length401
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_SULTO (50S ribosomal protein L2P OS=Sulfolobus tokodaii GN=rpl2p PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.448e-14
Identity = 35/55 (63.64%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    1 NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            N Y K++VK   WP VRGVAMN V HPHGGG HQ +   STV R+APPG+KVG I
Sbjct:  173 NNYWKYKVKAKKWPHVRGVAMNAVSHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METS5 (50S ribosomal protein L2P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.454e-14
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    1 NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            N Y K++VK   WP VRGVAMN V HPHGGG HQ +  +STV R+ PPG+KVG I
Sbjct:  173 NNYWKYKVKATKWPDVRGVAMNVVSHPHGGGLHQSVSRSSTVARNTPPGRKVGHI 227          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_SULAC (50S ribosomal protein L2P OS=Sulfolobus acidocaldarius GN=rpl2p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.123e-14
Identity = 35/55 (63.64%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    1 NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            N Y K+RV+   WP VRGVAMN V HPHGGG HQ +   STV R+APPG+KVG I
Sbjct:  173 NNYWKYRVRAVKWPVVRGVAMNAVSHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_SULSO (50S ribosomal protein L2P OS=Sulfolobus solfataricus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.303e-14
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 1
Query:    7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            Y K++VK   WP VRGVAMN V+HPHGGG HQ +   STV R+APPG+KVG I
Sbjct:  175 YWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_SULIY (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.303e-14
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 1
Query:    7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            Y K++VK   WP VRGVAMN V+HPHGGG HQ +   STV R+APPG+KVG I
Sbjct:  175 YWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_SULIN (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.303e-14
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 1
Query:    7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            Y K++VK   WP VRGVAMN V+HPHGGG HQ +   STV R+APPG+KVG I
Sbjct:  175 YWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_SULIM (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.303e-14
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 1
Query:    7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            Y K++VK   WP VRGVAMN V+HPHGGG HQ +   STV R+APPG+KVG I
Sbjct:  175 YWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_SULIL (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.303e-14
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 1
Query:    7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            Y K++VK   WP VRGVAMN V+HPHGGG HQ +   STV R+APPG+KVG I
Sbjct:  175 YWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_SULIK (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.303e-14
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 1
Query:    7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            Y K++VK   WP VRGVAMN V+HPHGGG HQ +   STV R+APPG+KVG I
Sbjct:  175 YWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_SULIA (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.303e-14
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 1
Query:    7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            Y K++VK   WP VRGVAMN V+HPHGGG HQ +   STV R+APPG+KVG I
Sbjct:  175 YWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227          
The following BLAST results are available for this feature:
BLAST of CX299921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
RL2_SULTO2.448e-1463.6450S ribosomal protein L2P OS=Sulfolobus tokodaii G... [more]
RL2_METS55.454e-1461.8250S ribosomal protein L2P OS=Metallosphaera sedula... [more]
RL2_SULAC7.123e-1463.6450S ribosomal protein L2P OS=Sulfolobus acidocalda... [more]
RL2_SULSO9.303e-1464.1550S ribosomal protein L2P OS=Sulfolobus solfataric... [more]
RL2_SULIY9.303e-1464.1550S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIN9.303e-1464.1550S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIM9.303e-1464.1550S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIL9.303e-1464.1550S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIK9.303e-1464.1550S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIA9.303e-1464.1550S ribosomal protein L2P OS=Sulfolobus islandicus... [more]

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Properties
Property NameValue
Genbank descriptionC07004A08SK SaltLeaf1 Citrus clementina cDNA clone C07004A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299921 ID=CX299921; Name=CX299921; organism=Citrus clementina; type=EST; length=401bp
AATGCTTATCACAAGTTCAGGGTGAAGAGGAACTGCTGGCCCAAGGTCCG
TGGTGTTGCCATGAACCCTGTTGAGCATCCCCATGGTGGTGGTAACCACC
AGCACATTGGGCATGCAAGTACGGTTCGCCGTGATGCACCCCCTGGCCAA
AAGGTTGGTCTTATTGCTGCTAGGAGGACTGGTCGTCTTAGAGGACAAGC
AGCTGCCACTGCTGCAAAGGCTGACAAGGCTTAGAGTTTCGCTTGAGCTC
ATTTTAATTTTGTTTTGTGCTGTTGAACATCTTCATATGGTTGTTATCTG
TTAGCATTAGATTTTGGTTTGCAATTTTGGAAGGTTACTAACTTCTTGTG
ATTAGTACATTGAAAGTGAGAGTATTTTGTTTTAAAAAAAAAAAAAAAAA
A
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