CX299921

Overview
NameCX299921
Unique NameCX299921
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length401
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_HYPBU (50S ribosomal protein L2P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.215e-13
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            AY+K+  K + WP+VRGVAMN V HPHGGG+HQ     +TV R+APPG+KVG I
Sbjct:  175 AYYKWSAKPHVWPRVRGVAMNAVNHPHGGGSHQSPSFPTTVSRNAPPGRKVGHI 228          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METMP (50S ribosomal protein L2P OS=Methanococcus maripaludis GN=rpl2p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.587e-13
Identity = 33/53 (62.26%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            YH    K   WPKVRGVAMN V+HP+GGG HQHIG  S+V R   PG+KVG I
Sbjct:  180 YHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHIGKPSSVSRHTSPGRKVGHI 232          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METM5 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.707e-13
Identity = 32/53 (60.38%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            YH    K   WPKVRGVAMN V+HP+GGG HQH+G  S+V R   PG+KVG I
Sbjct:  180 YHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHI 232          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METVS (50S ribosomal protein L2P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.030e-13
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            +H    K   WPKVRGVAMN V+HP+GGG HQH+G  S+V R+  PG+KVG I
Sbjct:  180 HHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRNTSPGRKVGHI 232          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METVA (50S ribosomal protein L2P OS=Methanococcus vannielii GN=rpl2p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.030e-13
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            +H    K   WPKVRGVAMN V+HP+GGG HQH+G  S+V R+  PG+KVG I
Sbjct:  180 HHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRNTSPGRKVGHI 232          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_HALLT (50S ribosomal protein L2P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.875e-13
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    1 NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 159
            N YHK + +   +P+VRGVAMN V+HP GGG  QH G   +V RDAPPG+KVG
Sbjct:  175 NKYHKMKARGTKYPRVRGVAMNAVDHPFGGGGRQHPGQPKSVSRDAPPGRKVG 227          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METM7 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.029e-12
Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            +H    K   WPKVRGVAMN V+HP+GGG HQH+G  S+V R   PG+KVG I
Sbjct:  180 HHSLSAKAIAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHI 232          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METM6 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.029e-12
Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            +H    K   WPKVRGVAMN V+HP+GGG HQH+G  S+V R   PG+KVG I
Sbjct:  180 HHSLSAKAIAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHI 232          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_KORCO (50S ribosomal protein L2P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.029e-12
Identity = 33/53 (62.26%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            Y+  R     WP VRGVAMNPV HPHGGG+H+  G  +TV R APPGQKVG I
Sbjct:  177 YYHERTHPKRWPVVRGVAMNPVSHPHGGGSHKRPGKPTTVARTAPPGQKVGHI 229          
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METLZ (50S ribosomal protein L2P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.343e-12
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 1
Query:    7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165
            YHK +     WP+VRGVAMN ++HP GGG HQH G   TV R A PG+KVG +
Sbjct:  179 YHKMKTSATRWPRVRGVAMNVIDHPFGGGGHQHPGKPKTVARGASPGRKVGSV 231          
The following BLAST results are available for this feature:
BLAST of CX299921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
RL2_HYPBU1.215e-1361.1150S ribosomal protein L2P OS=Hyperthermus butylicu... [more]
RL2_METMP1.587e-1362.2650S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METM52.707e-1360.3850S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METVS6.030e-1358.4950S ribosomal protein L2P OS=Methanococcus vanniel... [more]
RL2_METVA6.030e-1358.4950S ribosomal protein L2P OS=Methanococcus vanniel... [more]
RL2_HALLT7.875e-1358.4950S ribosomal protein L2P OS=Halorubrum lacusprofu... [more]
RL2_METM71.029e-1258.4950S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METM61.029e-1258.4950S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_KORCO1.029e-1262.2650S ribosomal protein L2P OS=Korarchaeum cryptofil... [more]
RL2_METLZ1.343e-1256.6050S ribosomal protein L2P OS=Methanocorpusculum la... [more]

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Properties
Property NameValue
Genbank descriptionC07004A08SK SaltLeaf1 Citrus clementina cDNA clone C07004A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299921 ID=CX299921; Name=CX299921; organism=Citrus clementina; type=EST; length=401bp
AATGCTTATCACAAGTTCAGGGTGAAGAGGAACTGCTGGCCCAAGGTCCG
TGGTGTTGCCATGAACCCTGTTGAGCATCCCCATGGTGGTGGTAACCACC
AGCACATTGGGCATGCAAGTACGGTTCGCCGTGATGCACCCCCTGGCCAA
AAGGTTGGTCTTATTGCTGCTAGGAGGACTGGTCGTCTTAGAGGACAAGC
AGCTGCCACTGCTGCAAAGGCTGACAAGGCTTAGAGTTTCGCTTGAGCTC
ATTTTAATTTTGTTTTGTGCTGTTGAACATCTTCATATGGTTGTTATCTG
TTAGCATTAGATTTTGGTTTGCAATTTTGGAAGGTTACTAACTTCTTGTG
ATTAGTACATTGAAAGTGAGAGTATTTTGTTTTAAAAAAAAAAAAAAAAA
A
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