CX299921
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_HYPBU (50S ribosomal protein L2P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl2p PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.215e-13 Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 1 Query: 4 AYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 AY+K+ K + WP+VRGVAMN V HPHGGG+HQ +TV R+APPG+KVG I Sbjct: 175 AYYKWSAKPHVWPRVRGVAMNAVNHPHGGGSHQSPSFPTTVSRNAPPGRKVGHI 228
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METMP (50S ribosomal protein L2P OS=Methanococcus maripaludis GN=rpl2p PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.587e-13 Identity = 33/53 (62.26%), Postives = 37/53 (69.81%), Query Frame = 1 Query: 7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 YH K WPKVRGVAMN V+HP+GGG HQHIG S+V R PG+KVG I Sbjct: 180 YHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHIGKPSSVSRHTSPGRKVGHI 232
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METM5 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl2p PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.707e-13 Identity = 32/53 (60.38%), Postives = 37/53 (69.81%), Query Frame = 1 Query: 7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 YH K WPKVRGVAMN V+HP+GGG HQH+G S+V R PG+KVG I Sbjct: 180 YHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHI 232
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METVS (50S ribosomal protein L2P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl2p PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.030e-13 Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 1 Query: 7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 +H K WPKVRGVAMN V+HP+GGG HQH+G S+V R+ PG+KVG I Sbjct: 180 HHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRNTSPGRKVGHI 232
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METVA (50S ribosomal protein L2P OS=Methanococcus vannielii GN=rpl2p PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.030e-13 Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 1 Query: 7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 +H K WPKVRGVAMN V+HP+GGG HQH+G S+V R+ PG+KVG I Sbjct: 180 HHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRNTSPGRKVGHI 232
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_HALLT (50S ribosomal protein L2P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl2p PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 7.875e-13 Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 1 Query: 1 NAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 159 N YHK + + +P+VRGVAMN V+HP GGG QH G +V RDAPPG+KVG Sbjct: 175 NKYHKMKARGTKYPRVRGVAMNAVDHPFGGGGRQHPGQPKSVSRDAPPGRKVG 227
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METM7 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl2p PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.029e-12 Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 1 Query: 7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 +H K WPKVRGVAMN V+HP+GGG HQH+G S+V R PG+KVG I Sbjct: 180 HHSLSAKAIAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHI 232
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METM6 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl2p PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.029e-12 Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 1 Query: 7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 +H K WPKVRGVAMN V+HP+GGG HQH+G S+V R PG+KVG I Sbjct: 180 HHSLSAKAIAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHI 232
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_KORCO (50S ribosomal protein L2P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl2p PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.029e-12 Identity = 33/53 (62.26%), Postives = 37/53 (69.81%), Query Frame = 1 Query: 7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 Y+ R WP VRGVAMNPV HPHGGG+H+ G +TV R APPGQKVG I Sbjct: 177 YYHERTHPKRWPVVRGVAMNPVSHPHGGGSHKRPGKPTTVARTAPPGQKVGHI 229
BLAST of CX299921 vs. ExPASy Swiss-Prot
Match: RL2_METLZ (50S ribosomal protein L2P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl2p PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.343e-12 Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 1 Query: 7 YHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 165 YHK + WP+VRGVAMN ++HP GGG HQH G TV R A PG+KVG + Sbjct: 179 YHKMKTSATRWPRVRGVAMNVIDHPFGGGGHQHPGKPKTVARGASPGRKVGSV 231 The following BLAST results are available for this feature:
BLAST of CX299921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >CX299921 ID=CX299921; Name=CX299921; organism=Citrus clementina; type=EST; length=401bpback to top |