CX299923

Overview
NameCX299923
Unique NameCX299923
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length312
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig108 contig Ccv1_Contig108:1043..1354. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.404e-27
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
[Close]
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.404e-27
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
[Close]
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.404e-27
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266
[Close]
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.669e-27
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267
[Close]
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.669e-27
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
[Close]
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.669e-27
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
[Close]
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.669e-27
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
[Close]
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.669e-27
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
[Close]
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.669e-27
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  208 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264
[Close]
BLAST of CX299923 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.669e-27
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 173
            LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA+PVNNNAWAYATNFVPGK
Sbjct:  189 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245
The following BLAST results are available for this feature:
BLAST of CX299923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CB25_PETSP7.404e-2798.25Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB23_PETSP7.404e-2798.25Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_TOBAC7.404e-2798.25Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2G_SOLLC9.669e-2798.25Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB2C_SOLLC9.669e-2798.25Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2B_SOLLC9.669e-2798.25Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_SOLLC9.669e-2798.25Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB24_PETSP9.669e-2798.25Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB22_HORVU9.669e-2798.25Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SOYBN9.669e-2798.25Chlorophyll a-b binding protein, chloroplastic (Fr... [more]

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Properties
Property NameValue
Genbank descriptionC07004A10SK SaltLeaf1 Citrus clementina cDNA clone C07004A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299923 ID=CX299923; Name=CX299923; organism=Citrus clementina; type=EST; length=312bp
AGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATG
TTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAA
CTTGGCCGACCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACG
CCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCT
CTTTTCGGTTTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGC
TTTAATTTGAGTTGTGATTATTTATAAAATGCTTCAATTTGATCTAAAAA
AAAAAAAAAAAA
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